Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014404

Physical Location & Seq

Genomic Coordinates Reverse (-)

19728367 .. 19729696

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGACGCCGCAGCGCTCCGTCGCTTATGTTTCTCGGTCTCCGGTGTTGCGGTGGGAAAGCAACTGCGAGGATCACATTTTCAAGTGATGGCGGGAGTGGGAAGAAGAAGAAAAAGAGCAGGTTTTGGTTGAAGAAGAAGAAGAAGGGTGTGGAAGAAGAACCAGAGCAGCAGCTGCAGCATAAAGAGCAGCTTCAGCAAGGTGATGTTGGTGTGTGGGAGTTTCTTATTATTGGTACCAGATTGTTGAATGACTTGATGCCTCTAGGTTGTCTTGAACTTTCAAGTTGTTTGCAATCAAGGAAACTGATGGTGCAGCTGCAATGTTCTCTCAACATGCTCGAACGAGATACTGGGTATGTTTCACCATTGATATCTTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019863 GO:0019865 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044877 GO:0045488 GO:0045490 GO:0047911 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

128

Amino Acids

14.49

Weight (kDa)

9.71

Isoelectric Point (pI)

70.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18180
fragaria_vesca	FvH4_2g16950
malus_domestica	MD05G1141300.v1.1 MD05G1142200.v1.1
prunus_persica	Prupe.8G181300_v2.0.a1
pyrus_communis	pycom05g13670
rosa_chinensis	RchiOBHm_Chr6g0281151
rosa_laevigata	RLG00000012990
rosa_multiflora	Rmu_co8202118.1_g000001 Rmu_sc0035236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187250
rosa_rugosa	Rorug06G0139300
rosa_samantha	Rh6AG251100 Rh6BG254300 Rh6CG253700 Rh6DG245700
rosa_wichuraiana	Rw6G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	3 cut(s)	10, 51, 93
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	238
AfeI	AGCGCT	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	84, 133, 250, 278, 285
AluBI	AGCT	3 cut(s)	175, 193, 319
AluI	AGCT	3 cut(s)	175, 193, 319
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	16
ApeKI	GCWGC	8 cut(s)	12, 169, 172, 175, 178, 190, 316, 319
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	215, 357
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	8 cut(s)	24, 162, 181, 184, 190, 202, 306, 328
BccI	CCATC	2 cut(s)	83, 304
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	9 cut(s)	10, 13, 170, 173, 176, 179, 191, 317, 320
BlsI	GCNGC	9 cut(s)	11, 14, 171, 174, 177, 180, 192, 318, 321
BmiI	GGNNCC	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	8 cut(s)	24, 162, 181, 184, 190, 202, 306, 328
BsgI	GTGCAG	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	3 cut(s)	10, 51, 93
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	7
BstACI	GRCGYC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 178, 187, 196
BstNSI	RCATGY	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	176
BstV1I	GCAGC	8 cut(s)	24, 162, 181, 184, 190, 202, 306, 328
BveI	ACCTGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	17
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	3 cut(s)	175, 193, 319
CviKI_1	RGCY	3 cut(s)	175, 193, 319
CviQI	GTAC	1 cut(s)	237
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	375
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	375
FaeI	CATG	1 cut(s)	340
FaiI	YATR	4 cut(s)	29, 183, 338, 360
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	86
Fnu4HI	GCNGC	9 cut(s)	10, 13, 170, 173, 176, 179, 191, 317, 320
Fsp4HI	GCNGC	9 cut(s)	10, 13, 170, 173, 176, 179, 191, 317, 320
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	9 cut(s)	10, 13, 170, 173, 176, 179, 191, 317, 320
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	1 cut(s)	43
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	215, 357
Hpy188I	TCNGA	1 cut(s)	386
Hpy188III	TCNNGA	1 cut(s)	275
Hpy99I	CGWCG	2 cut(s)	9, 25
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	178, 295, 316, 322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 178, 187, 196
Hsp92I	GRCGYC	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	15
KpnI	GGTACC	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	5 cut(s)	56, 106, 177, 253, 339
Lsp1109I	GCAGC	8 cut(s)	24, 162, 181, 184, 190, 202, 306, 328
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	9 cut(s)	115, 118, 121, 145, 148, 151, 154, 167, 170
MnlI	CCTC	2 cut(s)	63, 273
MspA1I	CMGCKG	2 cut(s)	175, 319
MspI	CCGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	175, 178, 187, 196
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	340
PkrI	GCNGC	9 cut(s)	11, 14, 171, 174, 177, 180, 192, 318, 321
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	175
PvuII	CAGCTG	2 cut(s)	175, 319
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SatI	GCNGC	9 cut(s)	10, 13, 170, 173, 176, 179, 191, 317, 320
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	6 cut(s)	125, 177, 195, 205, 271, 321
SfaNI	GCATC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	176
SsiI	CCGC	3 cut(s)	10, 51, 93
SspMI	CTAG	1 cut(s)	266
TaqI	TCGA	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	26
TauI	GCSGC	1 cut(s)	12
TseI	GCWGC	8 cut(s)	12, 169, 172, 175, 178, 190, 316, 319
TspGWI	ACGGA	1 cut(s)	9
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.