FvH4_2g18380

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
15758736 .. 15762359
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18380.t7

Sequence Viewer

Length: 324 bp
ATGGATCCTCCCCACGGATGCAGGTCATTGAGGCCGTGCTTTATCCACCATCCCCACCACCATCTCCACCATCACCATCATCACCACCTCTTATTCCTCAACCCTCACCACCACCACCACCACTTCAACTGCCACCACCACCACCACCATGTTCGCCCCAGTTTCACATCTTTTCCTCAAAACCCAGAACAACCTACTCCCATTCCTCTCCCAACCAATTCAAATTCCGAAACTTCTGGGCTTAAAGGGTATTGCAGGAGCAGAATCATCACGGTGTTGCGTTCGAAGAGGAAGAGGATGATGAGGACCCAATTTTCGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.79

Weight (kDa)

10.83

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 127, 222
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 65, 74, 98
AsuII TTCGAA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 4
BccI CCATC 4 cut(s) 57, 69, 78, 84
BceAI ACGGC 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 6, 308
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 3 cut(s) 23, 49, 303
BseLI CCNNNNNNNGG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 159
BshFI GGCC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 284
Bsp143I GATC 1 cut(s) 4
BspANI GGCC 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 6, 308
BspMI ACCTGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 284
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 2 cut(s) 281, 287
BstBI TTCGAA 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 3 cut(s) 23, 49, 303
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 3 cut(s) 23, 49, 303
BveI ACCTGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 306
CviAII CATG 1 cut(s) 149
CviJI RGCY 2 cut(s) 34, 241
CviKI_1 RGCY 2 cut(s) 34, 241
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 2 cut(s) 281, 287
EarI CTCTTC 2 cut(s) 281, 287
Eco47I GGWCC 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 306
FaeI CATG 1 cut(s) 152
FaiI YATR 1 cut(s) 150
FatI CATG 1 cut(s) 148
FokI GGATG 3 cut(s) 30, 36, 310
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 264
HphI GGTGA 3 cut(s) 65, 74, 98
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 21, 255
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 7, 172, 198, 222, 241
LweI GCATC 1 cut(s) 8
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 298, 304
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 217, 223, 311
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 2 cut(s) 147, 272
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 6, 308
NspV TTCGAA 1 cut(s) 284
PfeI GAWTC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 6, 308
PspPI GGNCC 1 cut(s) 306
PspPPI RGGWCCY 1 cut(s) 306
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 147, 272
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 306
SetI ASST 3 cut(s) 26, 90, 196
SfaNI GCATC 1 cut(s) 8
SfuI TTCGAA 1 cut(s) 284
SgeI CNNG 9 cut(s) 26, 34, 48, 161, 171, 197, 249, 268, 283
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 147, 272
Sse9I AATT 3 cut(s) 217, 223, 311
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 284
TasI AATT 3 cut(s) 217, 223, 311
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.