Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010525

Physical Location & Seq

Genomic Coordinates Forward (+)

44648140 .. 44648747

Gene Structure 608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATCCTCCACGTGGATGCAGGTCATGGAGGCCGTGCTTACTTCACCATCCCCACCACCATCTTCACCATCACCATCATCACCACCCCTTATTCCTCAACTCTCACCACCACCCCCACCACCACCACCATCACCACCACCATGTTCGCCCCTATTTCACATCTTTTGCTCAAAACCCAGAACATGCTACTCCCGTTCCTTTCCCAACCTATTCAAATTCGGAAACTTATGGGCTCAAAGGCGCTTACGATTACAATCCTATCCCCCAGGTATTGCAGGAGCAGAAGCATGATGATGTTGCGTTAGAAGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTCGCGAAATCTGAAGCTAAGAGGAAACTAGAGAGGAAGCAAGCTAAAAAGGGAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.89

Weight (kDa)

6.96

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380
malus_domestica	MD05G1169400.v1.1
prunus_persica	Prupe.8G196600_v2.0.a1
pyrus_communis	pycom10g13640
rosa_chinensis	RchiOBHm_Chr6g0283771
rosa_laevigata	RLG00000012798
rosa_multiflora	Rmu_sc0001521.1_g000014
rosa_roxburghii	Rroxscaffold_7G00185200
rosa_rugosa	Rorug06G0157700
rosa_samantha	Rh6AG269800 Rh6BG271900 Rh6CG272200 Rh6DG265700
rosa_wichuraiana	Rw0G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AccII	CGCG	1 cut(s)	368
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	217, 359
AcuI	CTGAAG	1 cut(s)	396
AcvI	CACGTG	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	380, 407
AluI	AGCT	2 cut(s)	380, 407
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	2 cut(s)	217, 359
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	6 cut(s)	38, 59, 65, 74, 98, 125
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	237
BbrPI	CACGTG	1 cut(s)	14
BccI	CCATC	5 cut(s)	57, 69, 78, 84, 138
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	23, 49, 325
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	4
Bsp68I	TCGCGA	1 cut(s)	368
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	303, 309
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	23, 49, 325
BstFNI	CGCG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	23, 49, 325
BtuMI	TCGCGA	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	245
CviAII	CATG	4 cut(s)	27, 143, 185, 290
CviJI	RGCY	4 cut(s)	34, 235, 380, 407
CviKI_1	RGCY	4 cut(s)	34, 235, 380, 407
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	2 cut(s)	303, 309
EarI	CTCTTC	2 cut(s)	303, 309
Eco24I	GRGCYC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	396
Eco72I	CACGTG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	237
FaeI	CATG	4 cut(s)	30, 146, 188, 293
FaiI	YATR	5 cut(s)	28, 144, 186, 231, 291
FatI	CATG	4 cut(s)	26, 142, 184, 289
FokI	GGATG	3 cut(s)	30, 36, 332
FriOI	GRGCYC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	30, 146, 188, 293
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HphI	GGTGA	6 cut(s)	38, 59, 65, 74, 98, 125
Hpy188I	TCNGA	2 cut(s)	223, 376
Hpy188III	TCNNGA	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	21, 277
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	4 cut(s)	30, 146, 188, 293
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	7, 192, 254, 263, 281
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	13
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	56, 320, 326
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	217, 330, 359
MnlI	CCTC	7 cut(s)	18, 24, 107, 304, 310, 378, 390
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	3 cut(s)	16, 141, 294
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	368
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	30, 146, 188, 293
NlaIV	GGNNCC	1 cut(s)	6
NruI	TCGCGA	1 cut(s)	368
NspI	RCATGY	1 cut(s)	188
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RruI	TCGCGA	1 cut(s)	368
RseI	CAYNNNNRTG	3 cut(s)	16, 141, 294
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	6 cut(s)	16, 26, 212, 273, 382, 409
SfaNI	GCATC	1 cut(s)	8
SmiMI	CAYNNNNRTG	3 cut(s)	16, 141, 294
Sse9I	AATT	3 cut(s)	217, 330, 359
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	267
TaiI	ACGT	1 cut(s)	16
TasI	AATT	3 cut(s)	217, 330, 359
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	363
XapI	RAATTY	2 cut(s)	217, 359
XceI	RCATGY	1 cut(s)	188
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.