Rh6BG271900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010525
Physical Location & Seq
Forward (+)
49068193 .. 49068812
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG271900.1

Sequence Viewer

Length: 432 bp
ATGGATCCTCCACATGGATGCAGGTCATGGAGGCCGTGCTTACTTCACCATCCCCACCACCATCTTCACCATCACCATCATCACCACCCCTTATTCCTCAACCCTCACCACCACCCCCACCACCACCACTTCAACTGCCGCCACCACCATGTTCGCCCCAATTTCACATCTTTTGCTCAAAACCCAGAACAAGCTACTCCCGTTCCTTTCCCAACCTATTCAAAGTCGGAAACTTCTGGGATCAAAGGCGCGTACGATTACAGTCCTACCCCCCTGGTATTGCAGGAGCAGAATCATGACGATGTTGCGTTAGAGGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTCGCGAAATCTGAAGCTAAGAGGAAACTAGAGAGGAAGCAAGCTAAAAAGGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.94

Weight (kDa)

6.93

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccII CGCG 2 cut(s) 251, 374
AciI CCGC 1 cut(s) 139
AclWI GGATC 2 cut(s) 12, 248
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 133, 222
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 194, 386, 413
AluI AGCT 3 cut(s) 194, 386, 413
AlwI GGATC 2 cut(s) 12, 248
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
AspLEI GCGC 1 cut(s) 251
AsuHPI GGTGA 5 cut(s) 38, 59, 65, 74, 98
BamHI GGATCC 1 cut(s) 4
BccI CCATC 4 cut(s) 57, 69, 78, 84
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 12
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 23, 49, 331
BseLI CCNNNNNNNGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 329
Bsh1236I CGCG 2 cut(s) 251, 374
BshFI GGCC 1 cut(s) 34
BsiWI CGTACG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 4, 240
Bsp68I TCGCGA 1 cut(s) 374
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 34
BspFNI CGCG 2 cut(s) 251, 374
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 248
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 4, 240
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 23, 49, 331
BstFNI CGCG 2 cut(s) 251, 374
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 2 cut(s) 7, 243
BstMBI GATC 2 cut(s) 4, 240
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstUI CGCG 2 cut(s) 251, 374
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 23, 49, 331
BtuMI TCGCGA 1 cut(s) 374
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 253
CviAII CATG 4 cut(s) 14, 27, 149, 296
CviJI RGCY 4 cut(s) 34, 194, 386, 413
CviKI_1 RGCY 4 cut(s) 34, 194, 386, 413
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 6, 242
DpnII GATC 2 cut(s) 4, 240
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 17, 30, 152, 299
FaiI YATR 4 cut(s) 15, 28, 150, 297
FatI CATG 4 cut(s) 13, 26, 148, 295
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 3 cut(s) 30, 36, 338
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 34
HhaI GCGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 17, 30, 152, 299
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 1 cut(s) 292
HphI GGTGA 5 cut(s) 38, 59, 65, 74, 98
Hpy188I TCNGA 2 cut(s) 229, 382
Hpy188III TCNNGA 2 cut(s) 296, 373
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 21, 283
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 4 cut(s) 17, 30, 152, 299
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 4, 240
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 7, 198, 222, 260, 269, 287
LweI GCATC 1 cut(s) 8
MaeI CTAG 1 cut(s) 398
MalI GATC 2 cut(s) 6, 242
MboI GATC 2 cut(s) 4, 240
MboII GAAGA 2 cut(s) 56, 332
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 160, 336, 365
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 9 cut(s) 18, 24, 107, 114, 307, 310, 316, 384, 396
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 3 cut(s) 16, 147, 300
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 2 cut(s) 251, 374
NdeII GATC 2 cut(s) 4, 240
NlaIII CATG 4 cut(s) 17, 30, 152, 299
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 374
PagI TCATGA 1 cut(s) 295
PfeI GAWTC 1 cut(s) 292
Pfl23II CGTACG 1 cut(s) 252
PkrI GCNGC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspLI CGTACG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RruI TCGCGA 1 cut(s) 374
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 3 cut(s) 16, 147, 300
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 2 cut(s) 4, 240
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 26, 196, 218, 388, 415
SfaNI GCATC 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 16, 147, 300
Sse9I AATT 3 cut(s) 160, 336, 365
SsiI CCGC 1 cut(s) 139
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 263
TasI AATT 3 cut(s) 160, 336, 365
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 369
XapI RAATTY 1 cut(s) 365
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.