Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010525

Physical Location & Seq

Genomic Coordinates Forward (+)

18815103 .. 18816216

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATCCTCCACATGGATGCAGGCCATGGAGACCGTGCTTACTTCACCATCCCCACCACCATCCCTTGTTCCTCTGCCCTCACCATCACCACCACCACCATCTTCATCACCAGAACAATCGCACCCTCTTCAATTGCCACGTACACACCAATTTTGCGCCTTTTCCTCAAAATCCAGAACACTCTGCTGCTGCTGCTGCTATTCCTTTTCAAACCCATTCGATTGCAGAGACTTCTGGAGCATTGCAGGAGCAGCAGAAGCATGGTGAAATTGGTGATGTTGTTGGGTTTGAAGAGGAAGAGGAAGAGGATGATGACCCAGTTTTCGTCTTAACAGATGAGTGGAAGGAGTTCTTTGCTAAATCTGAAGCTAAGAGGAGACTAGAGAAGCAGCAGGCGAAGAAGAAGAGAAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.18

Weight (kDa)

6.45

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380
malus_domestica	MD05G1169400.v1.1
prunus_persica	Prupe.8G196600_v2.0.a1
pyrus_communis	pycom10g13640
rosa_chinensis	RchiOBHm_Chr6g0283771
rosa_laevigata	RLG00000012798
rosa_multiflora	Rmu_sc0001521.1_g000014
rosa_roxburghii	Rroxscaffold_7G00185200
rosa_rugosa	Rorug06G0157700
rosa_samantha	Rh6AG269800 Rh6BG271900 Rh6CG272200 Rh6DG265700
rosa_wichuraiana	Rw0G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	133, 212, 293
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	3 cut(s)	25, 224, 373
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	6 cut(s)	188, 191, 194, 197, 253, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	6 cut(s)	38, 74, 80, 101, 278, 287
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	6 cut(s)	175, 178, 181, 184, 265, 403
BccI	CCATC	4 cut(s)	57, 69, 93, 108
BcoDI	GTCTC	3 cut(s)	25, 224, 373
BfaI	CTAG	1 cut(s)	383
BisI	GCNGC	6 cut(s)	189, 192, 195, 198, 254, 392
BlsI	GCNGC	6 cut(s)	190, 193, 196, 199, 255, 393
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	4 cut(s)	23, 49, 61, 316
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	6 cut(s)	175, 178, 181, 184, 265, 403
BshFI	GGCC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	3 cut(s)	25, 224, 373
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	5 cut(s)	134, 288, 294, 300, 401
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	23, 396
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	4 cut(s)	23, 49, 61, 316
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	3 cut(s)	25, 224, 373
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 197, 253, 259
BstV1I	GCAGC	6 cut(s)	175, 178, 181, 184, 265, 403
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	23, 49, 61, 316
Cac8I	GCNNGC	2 cut(s)	23, 396
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	3 cut(s)	14, 27, 263
CviJI	RGCY	3 cut(s)	25, 371, 417
CviKI_1	RGCY	3 cut(s)	25, 371, 417
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	5 cut(s)	134, 288, 294, 300, 401
EarI	CTCTTC	5 cut(s)	134, 288, 294, 300, 401
Eco130I	CCWWGG	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	3 cut(s)	17, 30, 266
FaiI	YATR	3 cut(s)	15, 28, 264
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	3 cut(s)	13, 26, 262
Fnu4HI	GCNGC	6 cut(s)	189, 192, 195, 198, 254, 392
FokI	GGATG	4 cut(s)	30, 36, 48, 323
Fsp4HI	GCNGC	6 cut(s)	189, 192, 195, 198, 254, 392
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	6 cut(s)	189, 192, 195, 198, 254, 392
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	17, 30, 266
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HphI	GGTGA	6 cut(s)	38, 74, 80, 101, 278, 287
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	2 cut(s)	176, 237
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	21, 227, 247
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 197, 253, 259
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	17, 30, 266
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	239, 250
LpnPI	CCDG	7 cut(s)	7, 125, 189, 222, 233, 333, 380
Lsp1109I	GCAGC	6 cut(s)	175, 178, 181, 184, 265, 403
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	8 cut(s)	95, 121, 305, 311, 317, 412, 415, 418
MfeI	CAATTG	1 cut(s)	133
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	133, 151, 270
MnlI	CCTC	9 cut(s)	18, 83, 90, 137, 177, 289, 295, 301, 369
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	133
MwoI	GCNNNNNNNGC	4 cut(s)	194, 197, 253, 259
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	17, 30, 266
NlaIV	GGNNCC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	190, 193, 196, 199, 255, 393
Ppu21I	YACGTR	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	6 cut(s)	189, 192, 195, 198, 254, 392
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	2 cut(s)	144, 373
SfaNI	GCATC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	133, 151, 270
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	133, 151, 270
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseI	GCWGC	6 cut(s)	188, 191, 194, 197, 253, 391
TspDTI	ATGAA	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.