Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010525

Physical Location & Seq

Genomic Coordinates Forward (+)

45723661 .. 45724231

Gene Structure 571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG265700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATCCTCCACATGGATGCAGGTCATGGAGGCCGTGCTTACTTCACCATCCCCACCACCATCTTCACCATCACCATCATCATCACCCCTTATTCCTCAACCCTCACCACCACCCCCACCACCACCACCACCACTTCAACTGCCGCCACCACCATGTTCGCCCCAATTTCACATCTTTTGCTCAAAACCCAGAACAAGCTACTCCCGTTCCTTTCCCAACCTATTCAAAGTCGGAAACTTCTGGGATCAAAGGCGCGTACGATTACAATCCTACCCCCCTGGTATTGCAGGAGCAGAATCATGACGATGTTGCGTTAGAGGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTTGCGAAATCTGAAGCTAAGAGGAAACTAGGTACACACCGTTTCTTAGTCTATAATATCATAGATACTTACTTCGATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

18.11

Weight (kDa)

6.35

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380
malus_domestica	MD05G1169400.v1.1
prunus_persica	Prupe.8G196600_v2.0.a1
pyrus_communis	pycom10g13640
rosa_chinensis	RchiOBHm_Chr6g0283771
rosa_laevigata	RLG00000012798
rosa_multiflora	Rmu_sc0001521.1_g000014
rosa_roxburghii	Rroxscaffold_7G00185200
rosa_rugosa	Rorug06G0157700
rosa_samantha	Rh6AG269800 Rh6BG271900 Rh6CG272200 Rh6DG265700
rosa_wichuraiana	Rw0G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AccII	CGCG	1 cut(s)	257
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	2 cut(s)	12, 254
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	260, 409
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	139, 228
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	200, 392
AluI	AGCT	2 cut(s)	200, 392
AlwI	GGATC	2 cut(s)	12, 254
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	1 cut(s)	257
AsuHPI	GGTGA	5 cut(s)	38, 59, 65, 77, 98
BamHI	GGATCC	1 cut(s)	4
BccI	CCATC	4 cut(s)	57, 69, 78, 84
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	23, 49, 337
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	34
BsiWI	CGTACG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	4, 246
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	12, 254
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	4, 246
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	393, 421
BstF5I	GGATG	3 cut(s)	23, 49, 337
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	7, 249
BstMBI	GATC	2 cut(s)	4, 246
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	23, 49, 337
BveI	ACCTGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	259, 408
CviAII	CATG	4 cut(s)	14, 27, 155, 302
CviJI	RGCY	3 cut(s)	34, 200, 392
CviKI_1	RGCY	3 cut(s)	34, 200, 392
CviQI	GTAC	2 cut(s)	259, 408
DdeI	CTNAG	2 cut(s)	393, 421
DpnI	GATC	2 cut(s)	6, 248
DpnII	GATC	2 cut(s)	4, 246
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	4 cut(s)	17, 30, 158, 305
FaiI	YATR	6 cut(s)	15, 28, 156, 303, 429, 437
FatI	CATG	4 cut(s)	13, 26, 154, 301
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	3 cut(s)	30, 36, 344
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	17, 30, 158, 305
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	298
HphI	GGTGA	5 cut(s)	38, 59, 65, 77, 98
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	235, 388
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	21, 289
HpyF3I	CTNAG	2 cut(s)	393, 421
Hsp92II	CATG	4 cut(s)	17, 30, 158, 305
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	4, 246
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	7, 204, 228, 266, 275, 293
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	404
MalI	GATC	2 cut(s)	6, 248
MboI	GATC	2 cut(s)	4, 246
MboII	GAAGA	2 cut(s)	56, 338
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	166, 342, 371
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	18, 24, 107, 114, 313, 316, 322, 390
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	3 cut(s)	16, 153, 306
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	257
NdeII	GATC	2 cut(s)	4, 246
NlaIII	CATG	4 cut(s)	17, 30, 158, 305
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	298
Pfl23II	CGTACG	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	260, 409
RsaNI	GTAC	2 cut(s)	259, 408
RseI	CAYNNNNRTG	3 cut(s)	16, 153, 306
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	4, 246
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	5 cut(s)	26, 202, 224, 394, 409
SfaNI	GCATC	1 cut(s)	8
SmiMI	CAYNNNNRTG	3 cut(s)	16, 153, 306
Sse9I	AATT	3 cut(s)	166, 342, 371
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	166, 342, 371
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	375
XapI	RAATTY	1 cut(s)	371
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.