Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010525

Physical Location & Seq

Genomic Coordinates Forward (+)

29920176 .. 29921550

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTTCTATTCTCACTTGGAAGGTTTATAGAAGTGGCTTATGGTAACCCACTAATCTATAAAAGCCCATTTACACTTGGATTAAGAATGATCGAGTTGGACCAGATCGGCCGGACCCAGCCCATTTGGCCACCGTATTATTTCAACCCATATCTAGTTCGGATCTTGAAACTTGAATTCACACCATCCAGCTGCCCATCGCTGATCAGTCTTCCAACAAAACCCATGGATCCTCAACATGGATGCAGGCCATGGAGGCCATGCTTGCTTCACCATCCCCACCACCACCTCCACCACCATCACCACCGCCACCCTTTATTCCTCTGCCCTCTCCATCACCACCTACACTGCCGCCACCATAACCACCACTTGCACCATCTCCGCCCCAATTTTGCGTCTTTTCCTCAAAACCCAGAACCCCCAGCTGCCGCCGCCATTCCTTTCCCAACCCATATGAATTCGGAACCTTCTGAGTTCAAAGAAGCGCACTACGACGATCCTACCTCTCTGACATTGCCGGAGCAGACGCATGGTGAAATCGGTGATGGTGTGTTGGAAGAGGAAGAGGATGATGAACCGATTTTCGTCTTAACAGACGAGTGGAAGGAGTTTTTTGCAAAATCTGAAGCTAAGAGGAAACTAGAGAAGCAGCAGGCCAAGAAGAAGAAGGCAAAAGATAAACAGAGTCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

27.07

Weight (kDa)

6.8

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380 FvH4_2g18380
malus_domestica	MD05G1169400.v1.1
prunus_persica	Prupe.8G196600_v2.0.a1
pyrus_communis	pycom10g13640
rosa_chinensis	RchiOBHm_Chr6g0283771
rosa_laevigata	RLG00000012798
rosa_multiflora	Rmu_sc0001521.1_g000014
rosa_roxburghii	Rroxscaffold_7G00185200
rosa_rugosa	Rorug06G0157700
rosa_samantha	Rh6AG269800 Rh6BG271900 Rh6CG272200 Rh6DG265700
rosa_wichuraiana	Rw0G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	307, 352, 382, 429, 432
AclWI	GGATC	4 cut(s)	170, 224, 237, 491
AcoI	YGGCCR	2 cut(s)	109, 128
AcsI	RAATTY	2 cut(s)	176, 457
AcuI	CTGAAG	1 cut(s)	645
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	145, 169, 176, 478
AluBI	AGCT	3 cut(s)	192, 425, 629
AluI	AGCT	3 cut(s)	192, 425, 629
AlwI	GGATC	4 cut(s)	170, 224, 237, 491
AoxI	GGCC	5 cut(s)	109, 128, 248, 257, 654
ApeKI	GCWGC	3 cut(s)	192, 425, 649
ApoI	RAATTY	2 cut(s)	176, 457
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	100, 114
AsuHPI	GGTGA	5 cut(s)	263, 293, 329, 545, 554
AvaII	GGWCC	2 cut(s)	100, 114
BalI	TGGCCA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	179, 412, 661
BccI	CCATC	7 cut(s)	193, 205, 282, 306, 342, 384, 539
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	2 cut(s)	155, 641
BglI	GCCNNNNNGGC	2 cut(s)	127, 256
BisI	GCNGC	6 cut(s)	193, 352, 426, 429, 432, 650
BlsI	GCNGC	6 cut(s)	194, 353, 427, 430, 433, 651
Bme18I	GGWCC	2 cut(s)	100, 114
BmgT120I	GGNCC	2 cut(s)	100, 114
BmiI	GGNNCC	3 cut(s)	116, 231, 465
BmsI	GCATC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	225, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	225, 251
BseGI	GGATG	4 cut(s)	185, 248, 274, 574
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	462
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	3 cut(s)	179, 412, 661
BseYI	CCCAGC	2 cut(s)	117, 421
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	5 cut(s)	111, 130, 250, 259, 656
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	112, 518
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	5 cut(s)	111, 130, 250, 259, 656
Bsp143I	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
Bsp19I	CCATGG	2 cut(s)	225, 251
BspACI	CCGC	5 cut(s)	307, 352, 382, 429, 432
BspANI	GGCC	5 cut(s)	111, 130, 250, 259, 656
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	116, 231, 465
BspPI	GGATC	4 cut(s)	170, 224, 237, 491
BsrDI	GCAATG	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	225, 251
BssMI	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
BssT1I	CCWWGG	2 cut(s)	225, 251
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	552, 558
BstC8I	GCNNGC	3 cut(s)	248, 266, 654
BstDEI	CTNAG	2 cut(s)	471, 630
BstDSI	CCRYGG	2 cut(s)	225, 251
BstEII	GGTNACC	1 cut(s)	44
BstF5I	GGATG	4 cut(s)	185, 248, 274, 574
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	6 cut(s)	93, 108, 165, 207, 232, 499
BstMBI	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 256, 265, 431
BstPI	GGTNACC	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	179, 412, 661
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	162, 229
BstYI	RGATCY	2 cut(s)	162, 229
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	111, 130, 250, 259, 656
BtgI	CCRYGG	2 cut(s)	225, 251
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	185, 248, 274, 574
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	3 cut(s)	248, 266, 654
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	2 cut(s)	100, 114
CseI	GACGC	2 cut(s)	384, 535
CviAII	CATG	5 cut(s)	226, 239, 252, 261, 530
DdeI	CTNAG	2 cut(s)	471, 630
DpnI	GATC	6 cut(s)	92, 107, 164, 206, 231, 498
DpnII	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
EaeI	YGGCCR	2 cut(s)	109, 128
EagI	CGGCCG	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	552, 558
EarI	CTCTTC	2 cut(s)	552, 558
EciI	GGCGGA	1 cut(s)	371
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	225, 251
Eco47I	GGWCC	2 cut(s)	100, 114
Eco52I	CGGCCG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	44
EcoRI	GAATTC	2 cut(s)	176, 457
EcoT14I	CCWWGG	2 cut(s)	225, 251
ErhI	CCWWGG	2 cut(s)	225, 251
FaeI	CATG	5 cut(s)	229, 242, 255, 264, 533
FatI	CATG	5 cut(s)	225, 238, 251, 260, 529
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	6 cut(s)	193, 352, 426, 429, 432, 650
FokI	GGATG	4 cut(s)	172, 255, 261, 581
Fsp4HI	GCNGC	6 cut(s)	193, 352, 426, 429, 432, 650
FspBI	CTAG	2 cut(s)	155, 641
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	6 cut(s)	193, 352, 426, 429, 432, 650
GsaI	CCCAGC	2 cut(s)	121, 425
HaeIII	GGCC	5 cut(s)	111, 130, 250, 259, 656
HapII	CCGG	2 cut(s)	112, 518
HgaI	GACGC	2 cut(s)	384, 535
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	229, 242, 255, 264, 533
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	1 cut(s)	685
HpaII	CCGG	2 cut(s)	112, 518
HphI	GGTGA	5 cut(s)	263, 293, 329, 545, 554
Hpy188I	TCNGA	5 cut(s)	162, 463, 472, 510, 625
Hpy188III	TCNNGA	2 cut(s)	166, 689
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	4 cut(s)	15, 477, 598, 661
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	3 cut(s)	246, 373, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 256, 265, 431
HpyF3I	CTNAG	2 cut(s)	471, 630
Hsp92II	CATG	5 cut(s)	229, 242, 255, 264, 533
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	9 cut(s)	116, 125, 131, 202, 232, 426, 435, 531, 638
Lsp1109I	GCAGC	3 cut(s)	179, 412, 661
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	155, 641
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	6 cut(s)	92, 107, 164, 206, 231, 498
MboI	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
MboII	GAAGA	5 cut(s)	203, 569, 575, 673, 676
MflI	RGATCY	2 cut(s)	162, 229
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	3 cut(s)	176, 388, 457
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	3 cut(s)	78, 239, 534
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	2 cut(s)	83, 590
Msp20I	TGGCCA	1 cut(s)	130
MspA1I	CMGCKG	2 cut(s)	192, 425
MspI	CCGG	2 cut(s)	112, 518
MwoI	GCNNNNNNNGC	4 cut(s)	127, 256, 265, 431
NcoI	CCATGG	2 cut(s)	225, 251
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
NlaIII	CATG	5 cut(s)	229, 242, 255, 264, 533
NlaIV	GGNNCC	3 cut(s)	116, 231, 465
PkrI	GCNGC	6 cut(s)	194, 353, 427, 430, 433, 651
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
PspEI	GGTNACC	1 cut(s)	44
PspFI	CCCAGC	2 cut(s)	117, 421
PspN4I	GGNNCC	3 cut(s)	116, 231, 465
PspPI	GGNCC	2 cut(s)	100, 114
PsuI	RGATCY	2 cut(s)	162, 229
PvuII	CAGCTG	2 cut(s)	192, 425
SaqAI	TTAA	2 cut(s)	83, 590
SatI	GCNGC	6 cut(s)	193, 352, 426, 429, 432, 650
Sau3AI	GATC	6 cut(s)	90, 105, 162, 204, 229, 496
Sau96I	GGNCC	2 cut(s)	100, 114
SchI	GAGTC	1 cut(s)	694
SetI	ASST	8 cut(s)	26, 194, 291, 345, 427, 469, 506, 631
SfaNI	GCATC	1 cut(s)	233
SfiI	GGCCNNNNNGGCC	1 cut(s)	256
SinI	GGWCC	2 cut(s)	100, 114
Sse9I	AATT	3 cut(s)	176, 388, 457
SsiI	CCGC	5 cut(s)	307, 352, 382, 429, 432
SspMI	CTAG	2 cut(s)	155, 641
StyI	CCWWGG	2 cut(s)	225, 251
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	176, 388, 457
TauI	GCSGC	3 cut(s)	354, 431, 434
Tru1I	TTAA	2 cut(s)	83, 590
Tru9I	TTAA	2 cut(s)	83, 590
TscAI	CASTG	1 cut(s)	353
TseI	GCWGC	3 cut(s)	192, 425, 649
TspDTI	ATGAA	2 cut(s)	470, 588
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	100, 114
XapI	RAATTY	2 cut(s)	176, 457
XspI	CTAG	2 cut(s)	155, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.