Rmu_sc0001521.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001521.1
OG0010525
Physical Location & Seq
Forward (+)
48440 .. 49065
626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001521.1_g000014.1.cds

Sequence Viewer

Length: 438 bp
atggatcctccacatggatgcaggtcatggaggccgtgcttacttcaccatccccaccaccatcttcaccatcaccatcatcaccaccccttattcctcaaacctcaccaccacccccaccaccaccaccaccacttcaactgccaccaccaccatgttcgccccaatttcacatcttttgctcaaaacccagaacaagctactcccgttcctttcccaacctattcaaagtcggaaacttctgggatcaaaggcgcgcacgattacaatcctacccccctggtattgcaggagcagaatcatgacgatgttgcgttagaggaggaagaggacgatgacccaattttcgtcttaactgatgaatggaaagatttttttgcgaaatctgaagctaagaggaaactagagaggaagcaagctaaaaagggaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

17.2

Weight (kDa)

6.99

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccII CGCG 1 cut(s) 257
AclWI GGATC 2 cut(s) 12, 254
AcuI CTGAAG 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 139, 228
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 200, 392, 419
AluI AGCT 3 cut(s) 200, 392, 419
AlwI GGATC 2 cut(s) 12, 254
AoxI GGCC 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspLEI GCGC 2 cut(s) 257, 259
AsuHPI GGTGA 5 cut(s) 38, 59, 65, 74, 98
BamHI GGATCC 1 cut(s) 4
BccI CCATC 4 cut(s) 57, 69, 78, 84
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 281
BfaI CTAG 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 23, 49
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 14
BsePI GCGCGC 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 4, 246
BspANI GGCC 1 cut(s) 34
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 254
BssECI CCNNGG 1 cut(s) 279
BssHII GCGCGC 1 cut(s) 255
BssMI GATC 2 cut(s) 4, 246
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 257, 417
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 23, 49
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 2 cut(s) 257, 259
BstKTI GATC 2 cut(s) 7, 249
BstMBI GATC 2 cut(s) 4, 246
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 2 cut(s) 23, 49
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 257, 417
CciI TCATGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 257, 259
CviAII CATG 4 cut(s) 14, 27, 155, 302
CviJI RGCY 4 cut(s) 34, 200, 392, 419
CviKI_1 RGCY 4 cut(s) 34, 200, 392, 419
DdeI CTNAG 1 cut(s) 393
DpnI GATC 2 cut(s) 6, 248
DpnII GATC 2 cut(s) 4, 246
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 17, 30, 158, 305
FaiI YATR 4 cut(s) 15, 28, 156, 303
FatI CATG 4 cut(s) 13, 26, 154, 301
FokI GGATG 2 cut(s) 30, 36
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 256, 258
HaeIII GGCC 1 cut(s) 34
HhaI GCGC 2 cut(s) 257, 259
Hin1II CATG 4 cut(s) 17, 30, 158, 305
Hin6I GCGC 2 cut(s) 255, 257
HinP1I GCGC 2 cut(s) 255, 257
HinfI GANTC 1 cut(s) 298
HphI GGTGA 5 cut(s) 38, 59, 65, 74, 98
Hpy188I TCNGA 2 cut(s) 235, 388
Hpy188III TCNNGA 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 21, 289
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 4 cut(s) 17, 30, 158, 305
HspAI GCGC 2 cut(s) 255, 257
Kzo9I GATC 2 cut(s) 4, 246
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 7, 204, 228, 266, 275, 293
LweI GCATC 1 cut(s) 8
MaeI CTAG 1 cut(s) 404
MalI GATC 2 cut(s) 6, 248
MboI GATC 2 cut(s) 4, 246
MboII GAAGA 2 cut(s) 56, 338
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 166, 342
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 9 cut(s) 18, 24, 107, 114, 313, 316, 322, 390, 402
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 3 cut(s) 16, 153, 306
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 257
NdeII GATC 2 cut(s) 4, 246
NlaIII CATG 4 cut(s) 17, 30, 158, 305
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 301
PauI GCGCGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 255
RseI CAYNNNNRTG 3 cut(s) 16, 153, 306
SaqAI TTAA 1 cut(s) 353
Sau3AI GATC 2 cut(s) 4, 246
ScrFI CCNGG 1 cut(s) 281
SetI ASST 6 cut(s) 26, 106, 202, 224, 394, 421
SfaNI GCATC 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 16, 153, 306
Sse9I AATT 2 cut(s) 166, 342
SspMI CTAG 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 279
TasI AATT 2 cut(s) 166, 342
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 375
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.