RchiOBHm_Chr6g0283771

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
46982245 .. 46983488
1244 bp
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UTR
Exon/CDS
Intron
PRQ25446

Sequence Viewer

Length: 165 bp
ATGTTCGCCCCAATTTCACATCTTTTGCTCAAAACCCAGAACAAGCTACTCCCGTTCCTTTCCCAACCTATTCAAAGTCGGAAACTTCTGGGATCAAAGGCGCGTACGATTACAATCCTACCCCCCTGGTATTGCAGGAGCAGAATCATGACGATGTTGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.31

Weight (kDa)

11.85

Isoelectric Point (pI)

62.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AclWI GGATC 1 cut(s) 100
AfaI GTAC 1 cut(s) 106
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AlwI GGATC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 103
BsiWI CGTACG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 92
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 147
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 1 cut(s) 103
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 148
CviJI RGCY 1 cut(s) 46
CviKI_1 RGCY 1 cut(s) 46
CviQI GTAC 1 cut(s) 105
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 125
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FatI CATG 1 cut(s) 147
GlaI GCGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 135
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 5 cut(s) 50, 74, 112, 121, 139
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 103
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 151
PagI TCATGA 1 cut(s) 147
PfeI GAWTC 1 cut(s) 144
Pfl23II CGTACG 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspLI CGTACG 1 cut(s) 104
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 152
Sau3AI GATC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 127
SetI ASST 2 cut(s) 48, 70
SgeI CNNG 9 cut(s) 49, 55, 64, 101, 114, 138, 139, 148, 160
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 125
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.