Rh6AG269800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010525
Physical Location & Seq
Forward (+)
46231444 .. 46253611
22168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG269800.1

Sequence Viewer

Length: 708 bp
ATGGGCAAATGGTATGCGCCGTGCAGTGAACACTGCTCTTGCATCTCGCTGACTGCCTCCTCTCATTCGTGTTCGAAGCCTCAATCCAATCCCCAGATCTTCGTACCAGGCTCTGAAAATCGAAAGCTTTGCAGCCTCTGTTCCTCATTCCATAAAGATGGAGCTTTTGCAAAGGACTTGAACGTTTCTACCGTTCGCAGCTCTTTAATTTTTAAAGCATCAGTCATGGTCATCTCTCTCCATACATCATATCATTTTGCCTGTTTAGTTCAGGAAAAATACTGGGAAGATCATCCTGGCCATGCAGTCCCACTTATGAAGCCCAAGTTTTATGGAGGACCTTGGAAGAGCTGTGGGTCCAGTCGGGCCTTGCTGATCGGAGACTTCAAAGCGGCGTCGTCGCTAAGAGTGAACTGGAGTTTTGAATCTGAATCGGAATCGGAGGATTTGCGGTCGAGAAAGGGGAAGACAGAACATGCTACTCCCGTTCCTTTCCCAACCTATTCAAATTCGGAAACTTATGGGCTCAAAGGCGCTTACGATTACAATCCTATCCCCCAGGTATTGCAGGAGCAGAAGCATGATGATGTTGCGTTAGAAGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTCGCGAAATCTGAAGCTAAGAGGAAACTAGGTACACCATTTCTTAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.34

Weight (kDa)

6.14

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 659
AciI CCGC 2 cut(s) 392, 451
AclI AACGTT 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 2 cut(s) 508, 650
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 2 cut(s) 105, 688
AgsI TTSAA 4 cut(s) 181, 388, 425, 507
AjnI CCWGG 3 cut(s) 106, 295, 558
AluBI AGCT 5 cut(s) 127, 164, 201, 351, 671
AluI AGCT 5 cut(s) 127, 164, 201, 351, 671
Alw26I GTCTC 1 cut(s) 375
AlwNI CAGNNNCTG 2 cut(s) 113, 138
AoxI GGCC 2 cut(s) 298, 366
ApeKI GCWGC 2 cut(s) 132, 198
ApoI RAATTY 2 cut(s) 508, 650
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AspLEI GCGC 2 cut(s) 19, 536
AspS9I GGNCC 3 cut(s) 338, 357, 366
AsuII TTCGAA 1 cut(s) 74
AvaII GGWCC 2 cut(s) 338, 357
BalI TGGCCA 1 cut(s) 300
BanII GRGCYC 1 cut(s) 528
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 144, 210
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 3 cut(s) 108, 297, 560
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 683
BfoI RGCGCY 1 cut(s) 537
BglII AGATCT 1 cut(s) 96
BisI GCNGC 3 cut(s) 133, 199, 393
BlsI GCNGC 3 cut(s) 134, 200, 394
Bme1390I CCNGG 3 cut(s) 108, 297, 560
Bme18I GGWCC 2 cut(s) 338, 357
BmgT120I GGNCC 3 cut(s) 338, 357, 366
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 3 cut(s) 108, 297, 560
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 51, 227
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 341, 558
Bse1I ACTGG 3 cut(s) 287, 360, 419
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 3 cut(s) 108, 297, 560
BseDI CCNNGG 2 cut(s) 341, 558
BseGI GGATG 2 cut(s) 292, 616
BseJI GATNNNNATC 1 cut(s) 546
BseNI ACTGG 3 cut(s) 287, 360, 419
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 144, 210
BsgI GTGCAG 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 1 cut(s) 455
BshFI GGCC 2 cut(s) 300, 368
BsiEI CGRYCG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 2 cut(s) 300, 368
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 96, 289, 375
Bsp68I TCGCGA 1 cut(s) 659
BspACI CCGC 2 cut(s) 392, 451
BspANI GGCC 2 cut(s) 300, 368
BspFNI CGCG 1 cut(s) 659
BspLI GGNNCC 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 74
BsrI ACTGG 3 cut(s) 287, 360, 419
BssECI CCNNGG 2 cut(s) 341, 558
BssMI GATC 3 cut(s) 96, 289, 375
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 3 cut(s) 108, 297, 560
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 3 cut(s) 341, 594, 600
BstACI GRCGYC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 404, 672, 698
BstF5I GGATG 2 cut(s) 292, 616
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 19, 536
BstKTI GATC 3 cut(s) 99, 292, 378
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 3 cut(s) 96, 289, 375
BstMCI CGRYCG 1 cut(s) 455
BstNI CCWGG 3 cut(s) 108, 297, 560
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 3 cut(s) 106, 295, 558
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 144, 210
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 2 cut(s) 300, 368
BtsCI GGATG 2 cut(s) 292, 616
BtsI GCAGTG 2 cut(s) 31, 31
BtsIMutI CAGTG 2 cut(s) 31, 31
BtuMI TCGCGA 1 cut(s) 659
CaiI CAGNNNCTG 2 cut(s) 113, 138
CfoI GCGC 2 cut(s) 19, 536
Cfr13I GGNCC 3 cut(s) 338, 357, 366
CseI GACGC 1 cut(s) 384
Csp6I GTAC 2 cut(s) 104, 687
CviAII CATG 4 cut(s) 226, 302, 476, 581
CviQI GTAC 2 cut(s) 104, 687
DdeI CTNAG 3 cut(s) 404, 672, 698
DpnI GATC 3 cut(s) 98, 291, 377
DpnII GATC 3 cut(s) 96, 289, 375
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 341, 594, 600
EarI CTCTTC 3 cut(s) 341, 594, 600
Eco130I CCWWGG 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 338, 357
Eco57I CTGAAG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 3 cut(s) 106, 295, 558
EcoT14I CCWWGG 1 cut(s) 341
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 4 cut(s) 229, 305, 479, 584
FaqI GGGAC 1 cut(s) 293
FatI CATG 4 cut(s) 225, 301, 475, 580
Fnu4HI GCNGC 3 cut(s) 133, 199, 393
FokI GGATG 2 cut(s) 279, 623
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 133, 199, 393
FspBI CTAG 1 cut(s) 683
GlaI GCGC 2 cut(s) 18, 535
GluI GCNGC 3 cut(s) 133, 199, 393
GsuI CTGGAG 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 2 cut(s) 300, 368
HgaI GACGC 1 cut(s) 384
HhaI GCGC 2 cut(s) 19, 536
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 4 cut(s) 229, 305, 479, 584
Hin6I GCGC 2 cut(s) 17, 534
HinP1I GCGC 2 cut(s) 17, 534
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 425, 431, 437
Hpy166II GTNNAC 3 cut(s) 29, 412, 689
Hpy188I TCNGA 7 cut(s) 115, 380, 430, 436, 442, 514, 667
Hpy188III TCNNGA 3 cut(s) 272, 456, 658
Hpy8I GTNNAC 3 cut(s) 29, 412, 689
Hpy99I CGWCG 2 cut(s) 400, 403
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 6 cut(s) 24, 42, 132, 170, 305, 568
HpyF3I CTNAG 3 cut(s) 404, 672, 698
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 4 cut(s) 229, 305, 479, 584
HspAI GCGC 2 cut(s) 17, 534
Kzo9I GATC 3 cut(s) 96, 289, 375
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 161, 571
Lsp1109I GCAGC 2 cut(s) 144, 210
LweI GCATC 2 cut(s) 51, 227
MaeI CTAG 1 cut(s) 683
MaeII ACGT 1 cut(s) 183
MalI GATC 3 cut(s) 98, 291, 377
MboI GATC 3 cut(s) 96, 289, 375
MboII GAAGA 6 cut(s) 91, 299, 358, 478, 611, 617
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 528
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 4 cut(s) 207, 508, 621, 650
MluNI TGGCCA 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
MseI TTAA 3 cut(s) 206, 213, 632
MslI CAYNNNNRTG 2 cut(s) 156, 585
Msp20I TGGCCA 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 108, 297, 560
MvaI CCWGG 3 cut(s) 108, 297, 560
MvnI CGCG 1 cut(s) 659
NdeII GATC 3 cut(s) 96, 289, 375
NlaIII CATG 4 cut(s) 229, 305, 479, 584
NlaIV GGNNCC 1 cut(s) 358
NruI TCGCGA 1 cut(s) 659
NspI RCATGY 1 cut(s) 479
NspV TTCGAA 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 3 cut(s) 425, 431, 437
PkrI GCNGC 3 cut(s) 134, 200, 394
PpuMI RGGWCCY 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 106, 295, 558
PspGI CCWGG 3 cut(s) 106, 295, 558
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 3 cut(s) 338, 357, 366
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 113, 138
PsuI RGATCY 1 cut(s) 96
RruI TCGCGA 1 cut(s) 659
RsaI GTAC 2 cut(s) 105, 688
RsaNI GTAC 2 cut(s) 104, 687
RseI CAYNNNNRTG 2 cut(s) 156, 585
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 3 cut(s) 206, 213, 632
SatI GCNGC 3 cut(s) 133, 199, 393
Sau3AI GATC 3 cut(s) 96, 289, 375
Sau96I GGNCC 3 cut(s) 338, 357, 366
ScrFI CCNGG 3 cut(s) 108, 297, 560
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 2 cut(s) 51, 227
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 2 cut(s) 338, 357
SmiMI CAYNNNNRTG 2 cut(s) 156, 585
Sse9I AATT 4 cut(s) 207, 508, 621, 650
SsiI CCGC 2 cut(s) 392, 451
SspMI CTAG 1 cut(s) 683
StyD4I CCNGG 3 cut(s) 106, 295, 558
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 186
TaqI TCGA 3 cut(s) 74, 121, 455
TasI AATT 4 cut(s) 207, 508, 621, 650
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 425, 431, 437
Tru1I TTAA 3 cut(s) 206, 213, 632
Tru9I TTAA 3 cut(s) 206, 213, 632
TscAI CASTG 2 cut(s) 31, 38
TseI GCWGC 2 cut(s) 132, 198
TspDTI ATGAA 2 cut(s) 332, 654
TspRI CASTG 2 cut(s) 31, 38
VpaK11BI GGWCC 2 cut(s) 338, 357
XapI RAATTY 2 cut(s) 508, 650
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.