FvH4_2g19800
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16743261 .. 16747841
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19800.t1

Sequence Viewer

Length: 1731 bp
ATGTACCGCTTCGCCTCTAACCTCGCCTCCAAAGCCAGGTTGGCTAAGACCAGTGGCCAGCAGATTGGTAGCAGAATAAGTTGGAGAAGGAACTATGCTGCCAAGGATATTAAATTCGGTGTCGAAGCCCGATCATTGATGCTCAGGGGTGTGGAAGAGCTTGCCGATGCCGTTAAAGTCACAATGGGGCCAAAAGGACGCAATGTTGTTCTGGAGCAAAGCTATGGAGCCCCTAAGGTGACAAAGGATGGTGTCACCGTAGCAAAGAGCATCGAGTTCAAAGACAAAGTCAAGAACATTGGTGCTAGTCTTGTAAAACAGGTGGCAAATGCTACAAATGATGCTGCAGGCGATGGTACCACTTGTGCAACAGTTCTCACCCGTGCCATATTTACTGAAGGATGCAAGTCAGTTGCAGCTGGAATGAATGCCATGGACCTAAGACGGGGCATCACAATGGCAGTTGATTGTGTTGTGACAAACTTGAAGAGTAGGGCTCGGATGATCAGCACATCTGAGGAAATAGCACAGGTTGGCACAATATCAGCTAATGGTGACCGAGAAATTGGTGAGCTAATAGCTAAGGCTATGGAGAAAGTCGGCAAAGAAGGTGTTATCACCATATCTGATGGAAAAACACTCGATAATGAATTGGAGGTTGTTGAAGGAATGAAGCTGGACAGGGGTTATATATCCCCTTACTTCATCACCAATCAGAAGAACCAAAAATGTGAATTAGAAGATGCACTTGTCTTAATCTACGAAAAGAAAATCTCAAATCTAAATGCTGTAGTGAAAATATTGGAGCTGGCATTGAAGAAACAAAGGCCTCTGCTGATTGTTGCTGAAGATTTTGAAAGTGAAGCGCTTGCTACACTCATTTTAAACAAGCTTCGTGCTGGAATTAAGGTCTGTGCAATTAAAGCTCCCGGATTTGGAGAGAACAGGAAGGCAAATTTGCAGGACATAAGCGTTCTTACTGGAGGCGAGGTGATAACTGAAGAGCTTGGTCTAAACCTCGAAAAAGTAACACCAGAGATGCTTGGAACATGCAAAAGGATTACAGTATCCAAGGATGACACCGTTATTCTTGATGGGGCTGGTGACAAGAAAGCTATTGAAGAAAGATGTGAACAGTTAAGATCATCAATTGAATTAAGTACTTCGGACTACGACAAGGAGAAGCTACAAGAGCGTCTGGCGAAGCTTTCTGGTGGAGTTGCTGTTTTAAAGATTGGTGGTGCCAGTGAAACAGAAGTTGGTGAAAAGAAGGACAGAGTTACTGATGCTCTGAATGCCACCAAGGCTGCCGTAGAGGAAGGAATTGTACCCGGTGGTGGTGCAGCACTTCTGTATGCCTCTAAAGAACTGGACAAGTTACAAACTGCAAACTTTGATCAAAAGATTGGTGTGCAGATCATTCAGAATGCTCTTAAGATGCCTGTATACACAATTGCTTCTAATGCTGGAGTGGAGGGGGCAGTTGTTGTTGGCAAGCTATTGGAGCAGGACAATCCTGACCTTGGATATGATGCAGCAAAGGGTGAATATGTAGATATGATAAAGGCCGGGATCATTGATCCCCTAAAAGTCATCAGAACTGCCTTGGTAGATGCTGCAAGTGTCTCCTCCTTAATGACTACTACTGAGGCCGTTGTTGTCTCGCTCCCAGAGAAGGAAGCCCCTGCAGTGGGAGCTGGCATGGGAGGAATGGGAGGAATGGATTACTAG

Protein Analysis

577

Amino Acids

61.4

Weight (kDa)

5.89

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 54 - 554 1.3e-71 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 356, 1241
AccI GTMKAC 1 cut(s) 1446
AciI CCGC 1 cut(s) 7
AclWI GGATC 2 cut(s) 1574, 1580
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 113, 955
AcuI CTGAAG 3 cut(s) 417, 867, 1020
AfaI GTAC 4 cut(s) 5, 358, 1162, 1329
AfeI AGCGCT 1 cut(s) 867
AfiI CCNNNNNNNGG 8 cut(s) 36, 445, 935, 1337, 1523, 1675, 1690, 1691
AflII CTTAAG 1 cut(s) 1433
AgsI TTSAA 7 cut(s) 280, 487, 665, 817, 857, 1121, 1154
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 1242, 1274
Alw26I GTCTC 2 cut(s) 1630, 1666
AlwI GGATC 2 cut(s) 1574, 1580
Aor51HI AGCGCT 1 cut(s) 867
AoxI GGCC 5 cut(s) 55, 188, 827, 1566, 1650
ApeKI GCWGC 7 cut(s) 98, 344, 416, 1307, 1343, 1535, 1616
ApoI RAATTY 2 cut(s) 113, 955
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 188, 436
AsuC2I CCSGG 3 cut(s) 930, 1332, 1570
AvaII GGWCC 1 cut(s) 436
AxyI CCTNAGG 1 cut(s) 234
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 2 cut(s) 356, 1241
BanII GRGCYC 2 cut(s) 232, 499
BarI GAAGNNNNNNTAC 2 cut(s) 1311, 1343
BbvI GCAGC 7 cut(s) 85, 331, 428, 1294, 1355, 1547, 1603
BccI CCATC 4 cut(s) 242, 347, 623, 1088
BceAI ACGGC 3 cut(s) 155, 1295, 1637
BciT130I CCWGG 1 cut(s) 37
BciVI GTATCC 1 cut(s) 1078
BclI TGATCA 2 cut(s) 504, 1396
BcnI CCSGG 3 cut(s) 930, 1332, 1570
BcoDI GTCTC 2 cut(s) 1630, 1666
BfaI CTAG 2 cut(s) 306, 1729
BfmI CTRYAG 3 cut(s) 345, 789, 1686
BfoI RGCGCY 1 cut(s) 869
BfrI CTTAAG 1 cut(s) 1433
BfuI GTATCC 1 cut(s) 1078
BglI GCCNNNNNGGC 2 cut(s) 41, 1304
BisI GCNGC 7 cut(s) 99, 345, 417, 1308, 1344, 1536, 1617
BlsI GCNGC 7 cut(s) 100, 346, 418, 1309, 1345, 1537, 1618
BmcAI AGTACT 1 cut(s) 1162
Bme1390I CCNGG 4 cut(s) 37, 930, 1332, 1570
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 2 cut(s) 188, 436
BmiI GGNNCC 4 cut(s) 189, 229, 358, 1243
BmrFI CCNGG 4 cut(s) 37, 930, 1332, 1570
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 3 cut(s) 233, 1002, 1488
Bpu10I CCTNAGC 2 cut(s) 143, 582
BpuMI CCSGG 3 cut(s) 930, 1332, 1570
BsaJI CCNNGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
BsaXI ACNNNNNCTCC 6 cut(s) 11, 41, 975, 1005, 1209, 1239
Bsc4I CCNNNNNNNGG 8 cut(s) 36, 445, 935, 1337, 1523, 1675, 1690, 1691
Bse1I ACTGG 4 cut(s) 51, 985, 1245, 1374
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
BseGI GGATG 4 cut(s) 253, 407, 507, 1081
BseLI CCNNNNNNNGG 8 cut(s) 36, 445, 935, 1337, 1523, 1675, 1690, 1691
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 3 cut(s) 157, 507, 1638
BseNI ACTGG 4 cut(s) 51, 985, 1245, 1374
BseRI GAGGAG 1 cut(s) 1618
BseXI GCAGC 7 cut(s) 85, 331, 428, 1294, 1355, 1547, 1603
BsgI GTGCAG 2 cut(s) 1362, 1433
BshFI GGCC 5 cut(s) 57, 190, 829, 1568, 1652
BshNI GGYRCC 2 cut(s) 356, 1241
BsiSI CCGG 3 cut(s) 930, 1332, 1569
BslI CCNNNNNNNGG 8 cut(s) 36, 445, 935, 1337, 1523, 1675, 1690, 1691
BsmAI GTCTC 2 cut(s) 1630, 1666
BsmI GAATGC 3 cut(s) 433, 1300, 1432
BsnI GGCC 5 cut(s) 57, 190, 829, 1568, 1652
Bsp1286I GDGCHC 2 cut(s) 232, 499
Bsp143I GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 1 cut(s) 7
BspANI GGCC 5 cut(s) 57, 190, 829, 1568, 1652
BspCNI CTCAG 3 cut(s) 156, 508, 1639
BspLI GGNNCC 4 cut(s) 189, 229, 358, 1243
BspMAI CTGCAG 2 cut(s) 349, 1690
BspPI GGATC 2 cut(s) 1574, 1580
BspQI GCTCTTC 2 cut(s) 150, 996
BspT107I GGYRCC 2 cut(s) 356, 1241
BspTI CTTAAG 1 cut(s) 1433
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 4 cut(s) 51, 985, 1245, 1374
BssECI CCNNGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
BssMI GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
BssNAI GTATAC 1 cut(s) 1447
BssT1I CCWWGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
Bst1107I GTATAC 1 cut(s) 1447
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 5 cut(s) 259, 373, 1066, 1084, 1137
Bst6I CTCTTC 3 cut(s) 150, 482, 996
BstAFI CTTAAG 1 cut(s) 1433
BstC8I GCNNGC 7 cut(s) 59, 162, 349, 810, 870, 1496, 1699
BstDEI CTNAG 7 cut(s) 45, 143, 234, 440, 516, 582, 1647
BstDSI CCRYGG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 554
BstF5I GGATG 4 cut(s) 253, 407, 507, 1081
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 7 cut(s) 134, 507, 1145, 1399, 1419, 1575, 1582
BstMAI GTCTC 2 cut(s) 1630, 1666
BstMBI GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
BstMWI GCNNNNNNNGC 9 cut(s) 32, 41, 923, 1192, 1295, 1304, 1463, 1504, 1694
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 1053
BstPI GGTNACC 1 cut(s) 554
BstSCI CCNGG 4 cut(s) 35, 928, 1330, 1568
BstSFI CTRYAG 3 cut(s) 345, 789, 1686
BstV1I GCAGC 7 cut(s) 85, 331, 428, 1294, 1355, 1547, 1603
BstXI CCANNNNNNTGG 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 1447
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 1078
BsuRI GGCC 5 cut(s) 57, 190, 829, 1568, 1652
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 253, 407, 507, 1081
BtsI GCAGTG 1 cut(s) 1695
BtsIMutI CAGTG 3 cut(s) 58, 1252, 1695
Cac8I GCNNGC 7 cut(s) 59, 162, 349, 810, 870, 1496, 1699
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 188, 436
CseI GACGC 2 cut(s) 207, 1184
Csp6I GTAC 4 cut(s) 4, 357, 1161, 1328
CviAII CATG 3 cut(s) 433, 1050, 1702
CviQI GTAC 4 cut(s) 4, 357, 1161, 1328
DdeI CTNAG 7 cut(s) 45, 143, 234, 440, 516, 582, 1647
DpnI GATC 7 cut(s) 133, 506, 1144, 1398, 1418, 1574, 1581
DpnII GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
DraI TTTAAA 2 cut(s) 885, 1230
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 150, 482, 996
EarI CTCTTC 3 cut(s) 150, 482, 996
Eco130I CCWWGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 2 cut(s) 232, 499
Eco47I GGWCC 1 cut(s) 436
Eco47III AGCGCT 1 cut(s) 867
Eco57I CTGAAG 3 cut(s) 417, 867, 1020
Eco81I CCTNAGG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
EcoT38I GRGCYC 2 cut(s) 232, 499
ErhI CCWWGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
FaeI CATG 3 cut(s) 436, 1053, 1705
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FatI CATG 3 cut(s) 432, 1049, 1701
FbaI TGATCA 2 cut(s) 504, 1396
FblI GTMKAC 1 cut(s) 1446
Fnu4HI GCNGC 7 cut(s) 99, 345, 417, 1308, 1344, 1536, 1617
FokI GGATG 4 cut(s) 260, 414, 514, 1088
FriOI GRGCYC 2 cut(s) 232, 499
Fsp4HI GCNGC 7 cut(s) 99, 345, 417, 1308, 1344, 1536, 1617
FspBI CTAG 2 cut(s) 306, 1729
GlaI GCGC 1 cut(s) 867
GluI GCNGC 7 cut(s) 99, 345, 417, 1308, 1344, 1536, 1617
GsuI CTGGAG 3 cut(s) 233, 1002, 1488
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 5 cut(s) 57, 190, 829, 1568, 1652
HapII CCGG 3 cut(s) 930, 1332, 1569
HgaI GACGC 2 cut(s) 207, 1184
HhaI GCGC 1 cut(s) 868
Hin1II CATG 3 cut(s) 436, 1053, 1705
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HindIII AAGCTT 2 cut(s) 890, 1205
HpaII CCGG 3 cut(s) 930, 1332, 1569
Hpy166II GTNNAC 2 cut(s) 1133, 1447
Hpy188I TCNGA 8 cut(s) 501, 517, 628, 717, 1168, 1293, 1425, 1598
Hpy188III TCNNGA 4 cut(s) 212, 292, 1091, 1517
Hpy8I GTNNAC 2 cut(s) 1133, 1447
HpyAV CCTTC 8 cut(s) 81, 392, 602, 659, 943, 1264, 1313, 1669
HpyCH4III ACNGT 5 cut(s) 259, 373, 1066, 1084, 1137
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 41, 923, 1192, 1295, 1304, 1463, 1504, 1694
HpyF3I CTNAG 7 cut(s) 45, 143, 234, 440, 516, 582, 1647
Hsp92II CATG 3 cut(s) 436, 1053, 1705
HspAI GCGC 1 cut(s) 866
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 2 cut(s) 504, 1396
Kzo9I GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
LguI GCTCTTC 2 cut(s) 150, 996
LmnI GCTCC 7 cut(s) 214, 227, 805, 931, 1504, 1671, 1694
Lsp1109I GCAGC 7 cut(s) 85, 331, 428, 1294, 1355, 1547, 1603
MaeI CTAG 2 cut(s) 306, 1729
MaeIII GTNAC 9 cut(s) 178, 238, 253, 475, 554, 1027, 1103, 1279, 1377
MalI GATC 7 cut(s) 133, 506, 1144, 1398, 1418, 1574, 1581
MboI GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
MboII GAAGA 8 cut(s) 167, 499, 730, 752, 829, 860, 1013, 1133
MfeI CAATTG 2 cut(s) 1149, 1452
MhlI GDGCHC 2 cut(s) 232, 499
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 1433
MspI CCGG 3 cut(s) 930, 1332, 1569
MspR9I CCNGG 4 cut(s) 37, 930, 1332, 1570
MunI CAATTG 2 cut(s) 1149, 1452
Mva1269I GAATGC 3 cut(s) 433, 1300, 1432
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 9 cut(s) 32, 41, 923, 1192, 1295, 1304, 1463, 1504, 1694
NciI CCSGG 3 cut(s) 930, 1332, 1570
NcoI CCATGG 1 cut(s) 432
NdeII GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
NlaIII CATG 3 cut(s) 436, 1053, 1705
NlaIV GGNNCC 4 cut(s) 189, 229, 358, 1243
NmuCI GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
NspI RCATGY 1 cut(s) 1053
PceI AGGCCT 1 cut(s) 829
PciSI GCTCTTC 2 cut(s) 150, 996
PctI GAATGC 3 cut(s) 433, 1300, 1432
PflFI GACNNNGTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 7 cut(s) 100, 346, 418, 1309, 1345, 1537, 1618
Psp6I CCWGG 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 554
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 4 cut(s) 189, 229, 358, 1243
PspPI GGNCC 2 cut(s) 188, 436
PstI CTGCAG 2 cut(s) 349, 1690
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 4 cut(s) 5, 358, 1162, 1329
RsaNI GTAC 4 cut(s) 4, 357, 1161, 1328
RseI CAYNNNNRTG 1 cut(s) 455
SapI GCTCTTC 2 cut(s) 150, 996
SatI GCNGC 7 cut(s) 99, 345, 417, 1308, 1344, 1536, 1617
Sau3AI GATC 7 cut(s) 131, 504, 1142, 1396, 1416, 1572, 1579
Sau96I GGNCC 2 cut(s) 188, 436
ScaI AGTACT 1 cut(s) 1162
ScrFI CCNGG 4 cut(s) 37, 930, 1332, 1570
SduI GDGCHC 2 cut(s) 232, 499
SfcI CTRYAG 3 cut(s) 345, 789, 1686
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 1433
SmoI CTYRAG 1 cut(s) 1433
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 1 cut(s) 7
SspI AATATT 1 cut(s) 801
SspMI CTAG 2 cut(s) 306, 1729
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 4 cut(s) 35, 928, 1330, 1568
StyI CCWWGG 6 cut(s) 102, 432, 1071, 1302, 1522, 1605
TaaI ACNGT 5 cut(s) 259, 373, 1066, 1084, 1137
TaqI TCGA 4 cut(s) 123, 273, 642, 1020
TaqII GACCGA 1 cut(s) 573
TatI WGTACW 1 cut(s) 1160
TscAI CASTG 3 cut(s) 58, 1252, 1695
TseFI GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
TseI GCWGC 7 cut(s) 98, 344, 416, 1307, 1343, 1535, 1616
Tsp45I GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
TspDTI ATGAA 4 cut(s) 440, 663, 686, 694
TspRI CASTG 3 cut(s) 58, 1252, 1695
Tth111I GACNNNGTC 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 1433
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 2 cut(s) 113, 955
XceI RCATGY 1 cut(s) 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 1446
XspI CTAG 2 cut(s) 306, 1729
ZrmI AGTACT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.