Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004623

Physical Location & Seq

Genomic Coordinates Reverse (-)

27373167 .. 27374205

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATTCAGGTCATAAACATTTGGACTGCGTACATGTCTCAGACCAAGTCCAACTCATGGTTAGTACCTACTTTCTTTAGGGAACAAGCCGGGTCAAATGAGGATCCATCCAATGTACCTGTTTCAATTGCATCAACAATAGTTGCTTGTGGGCTGCAGACGTTCCATAGGCGGTTGAAGCATTGTGTTGAGATTTTCATCCCATTGTATGATGAAATCGCGGACCATTGGTTTTTGTTGGTTATGAAACTAAAGGAGAAAATTGCTGAGTTGTGGGATAGTGTGCCAGAATTCACATCATTGAGTAGACGACTTGAGATAGCAAGAGCTACCTATAATTCGGAAGAGATGTGGTCTGCACTTGCACTTGAAATTGTCAATAATTCGAGCAATGAACTATTGAAATCGGTGATGAGAGCTTCTATGAAAGGTGAGATTGCGAAGAAGGTATTTCCAATGTTGCGGAGGCCACAAAATCCAATGCGGAGGCCACACAGTCCAATGCTGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

171

Amino Acids

19.75

Weight (kDa)

8.97

Isoelectric Point (pI)

60.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33210 AT2G33210 AT3G23990
fragaria_vesca	FvH4_2g19800 FvH4_4g05420
malus_domestica	MD05G1182500.v1.1 MD10G1170700.v1.1
prunus_persica	Prupe.1G056300_v2.0.a1 Prupe.8G209200_v2.0.a1 Prupe.8G209200_v2.0.a1
pyrus_communis	pycom13g20310
rosa_chinensis	RchiOBHm_Chr4g0396571 RchiOBHm_Chr6g0285501
rosa_laevigata	RLG00000009520 RLG00000012634
rosa_multiflora	Rmu_sc0001781.1_g000002 Rmu_sc0012495.1_g000008
rosa_roxburghii	Rroxscaffold_5G00341420 Rroxscaffold_7G00183070
rosa_rugosa	Rorug03G0349000 Rorug06G0175000
rosa_samantha	Rh4AG070400 Rh4BG068300 Rh4CG076200 Rh4DG065400 Rh6AG286600 Rh6BG287800 Rh6CG289000 Rh6DG281800
rosa_wichuraiana	Rw4G005610 Rw6G024620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	307
AccII	CGCG	1 cut(s)	221
AciI	CCGC	4 cut(s)	172, 221, 463, 484
AclWI	GGATC	2 cut(s)	98, 111
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	3 cut(s)	32, 66, 117
AfiI	CCNNNNNNNGG	1 cut(s)	57
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	126, 178, 371, 403
AluBI	AGCT	2 cut(s)	329, 419
AluI	AGCT	2 cut(s)	329, 419
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	98, 111
AoxI	GGCC	2 cut(s)	467, 488
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	421, 443
AvaII	GGWCC	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	197
BseGI	GGATG	2 cut(s)	107, 198
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	53, 258
BseXI	GCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	469, 490
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	469, 490
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	4 cut(s)	172, 221, 463, 484
BspANI	GGCC	2 cut(s)	469, 490
BspCNI	CTCAG	2 cut(s)	52, 259
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	159
BspPI	GGATC	2 cut(s)	98, 111
BsrDI	GCAATG	1 cut(s)	397
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	39, 267
BstF5I	GGATG	2 cut(s)	107, 198
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	155
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	469, 490
BtsCI	GGATG	2 cut(s)	107, 198
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	31, 65, 116
CviAII	CATG	2 cut(s)	34, 57
CviJI	RGCY	6 cut(s)	89, 154, 329, 419, 469, 490
CviKI_1	RGCY	6 cut(s)	89, 154, 329, 419, 469, 490
CviQI	GTAC	3 cut(s)	31, 65, 116
DdeI	CTNAG	2 cut(s)	39, 267
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	37, 60
FaiI	YATR	8 cut(s)	14, 35, 58, 168, 210, 245, 336, 425
FatI	CATG	2 cut(s)	33, 56
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	94, 185
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	469, 490
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	2 cut(s)	37, 60
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	421, 443
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	42, 343
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	131, 157, 359, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	39, 267
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	37, 60
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	3 cut(s)	103, 132, 300
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	140
MaeII	ACGT	1 cut(s)	161
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	356, 454
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	6 cut(s)	126, 261, 290, 337, 372, 382
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	3 cut(s)	94, 459, 480
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	37, 60
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	156
PscI	ACATGT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	3 cut(s)	32, 66, 117
RsaNI	GTAC	3 cut(s)	31, 65, 116
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	9 cut(s)	12, 70, 121, 164, 331, 335, 421, 433, 450
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	126, 261, 290, 337, 372, 382
SsiI	CCGC	4 cut(s)	172, 221, 463, 484
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	386
TasI	AATT	6 cut(s)	126, 261, 290, 337, 372, 382
TfiI	GAWTC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	187, 228, 260, 408, 440
Tth111I	GACNNNGTC	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.