Rh6DG281800
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
47603620 .. 47608502
4883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG281800.1

Sequence Viewer

Length: 1515 bp
ATGTACCGCTTCGCCACTAACCTCGCCTCCAAAGCCAGGTTGGCTAAGAACAGTGGCCAGCAGATTGGCAGCAGAATAAGTTGGAGAAGGAACTATGCGGCCAAGGATATTAAATTCGGTGTGGAAGCCCGATCGTTGATGCTTAGGGGTGTGGAAGAGCTTGCCGATGCTGTTAAAGTCACAATGGGGCCAAAAGGACGCAATGTTGTCCTGGAGCAAAGCTTTGGAGCTCCCAAAGTGACAAAGGATGGTGTGACTGTAGCAAAGAGCATTGAGTTCAAAGACAAAGTCAAAAACATTGGTGCTAGTCTTGTAAAGCAGGTGGCAAATGCTACAAATGATGCTGCGGGCGATGGTACCACTTGTGCTACAGTTCTCACCCGTGCCATATTTACCGAAGGATGCAAGTCAGTGGCAGCTGGAATGAATGCTATGGACCTAAGACGAGGCATCACAATGGCAGTTGATTGTGTTGTGACAAACTTGAAGAGCAGGGCTCGGATGATCAGTACATCAGAGGAAATAGCTCAGGTTGGCACAATATCAGCTAATGGTGACAGAGAGATTGGTGAGCTAATAGCTAAGGCTATGGAGAAAGTTGGTAAAGAAGGTGTTATCACCATATCTGATGGAAAAACACTCGACAATGAATTGGAGGTTGTTGAAGGAATGAAGCTGGACAGGGGTTATATATCCCCTTATTTTATCACCAATCAGAAGAACCAAAAATGTGAATTGGACGATCCACTTGTCTTAATCTACGAGAAGAAAATCTCAAATCTAAATGCTGTAGTGAAAATATTAGAGCTGGCATTGAAGAAACAAAGGCCTCTGCTGATTGTTGCTGAAGATTTTGAAAGTGAAGCACTTGCTACACTCATTTTAAACAAGCTTCGTGCTGGAATTAAGGTCTGTGCAATTAAAGCCCCTGGATTCGGAGAGAACAGGAAGGCAAATCTGCAGGACCTAGCCATTCTTACTGGAGGCGAGGTGATAACTGAAGAGCTTGGTCTGAACCTCGAAAAAGTGGGACCAGAGATGCTTGGCACATGCAAAAGGATTACAGTTTCCAAAGATGATACTGTTATTCTTGATGGGGCTGGTGACAAGAAAGCTATTGAAGAAAGATGTGAACAGTTAAGATCATCAATTGAATTGAGCACTTCTGATTACGACAAGGAGAAGCTACAAGAGCGGCTGGCAAAGATTTCTGGTGGTGTTGCTGTTCTAAAGATTGGCGGAGCTAGTGAAGCAGAAGTCGGTGAAAAGAAGGATAGGGTTACTGATGCTCTGAATGCCACTAAGGCTGCTGTAGAAGAAGGAATTGTACCTGGTGGTGGTGCAGCACTTCTGTATGCCTCCAAAGAGCTGGACAAGTTGCAAACTGCAAACTTTGATCAAAAGATTGGTGTGCAGATCATTCAAAATGCTCTTAAGGTTCACTATATTACTCCTCTTCTCATTCCCCTGTTATACAAACAATTAATTTCATCACTTCTGTTACTCATCTTATAA

Protein Analysis

504

Amino Acids

54.36

Weight (kDa)

8.7

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 54 - 480 9.7e-54 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1513
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 1195
AciI CCGC 5 cut(s) 7, 98, 347, 1195, 1239
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 2 cut(s) 55, 99
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 867, 1020
AfaI GTAC 4 cut(s) 5, 358, 511, 1329
AfiI CCNNNNNNNGG 3 cut(s) 36, 935, 1337
AflII CTTAAG 1 cut(s) 1433
AgsI TTSAA 8 cut(s) 280, 487, 665, 817, 857, 1121, 1154, 1424
AjnI CCWGG 4 cut(s) 35, 210, 928, 1330
Alw21I GWGCWC 2 cut(s) 232, 1163
AlwI GGATC 1 cut(s) 737
AoxI GGCC 4 cut(s) 55, 99, 188, 827
ApeKI GCWGC 5 cut(s) 69, 344, 416, 1307, 1343
ApoI RAATTY 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AseI ATTAAT 1 cut(s) 1484
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 4 cut(s) 188, 436, 964, 1031
AsuHPI GGTGA 8 cut(s) 370, 566, 581, 610, 700, 1003, 1115, 1274
AvaII GGWCC 3 cut(s) 436, 964, 1031
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 2 cut(s) 232, 499
BarI GAAGNNNNNNTAC 2 cut(s) 1311, 1343
Bbv12I GWGCWC 2 cut(s) 232, 1163
BbvI GCAGC 5 cut(s) 81, 331, 428, 1294, 1355
BccI CCATC 4 cut(s) 242, 347, 623, 1088
BciT130I CCWGG 4 cut(s) 37, 212, 930, 1332
BclI TGATCA 2 cut(s) 504, 1396
BfaI CTAG 3 cut(s) 306, 968, 1245
BfmI CTRYAG 5 cut(s) 258, 369, 789, 959, 1311
BfrI CTTAAG 1 cut(s) 1433
BfuAI ACCTGC 1 cut(s) 310
BglI GCCNNNNNGGC 2 cut(s) 41, 1304
BisI GCNGC 7 cut(s) 70, 99, 345, 417, 1196, 1308, 1344
BlsI GCNGC 7 cut(s) 71, 100, 346, 418, 1197, 1309, 1345
Bme1390I CCNGG 4 cut(s) 37, 212, 930, 1332
Bme18I GGWCC 3 cut(s) 436, 964, 1031
BmgT120I GGNCC 4 cut(s) 188, 436, 964, 1031
BmiI GGNNCC 3 cut(s) 189, 358, 1032
BmrFI CCNGG 4 cut(s) 37, 212, 930, 1332
BmsI GCATC 7 cut(s) 129, 157, 331, 392, 459, 1029, 1276
BplI GAGNNNNNCTC 2 cut(s) 481, 513
BpmI CTGGAG 2 cut(s) 233, 1002
Bpu10I CCTNAGC 3 cut(s) 143, 528, 582
BsaJI CCNNGG 2 cut(s) 102, 928
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 975, 1005
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 935, 1337
Bse1I ACTGG 1 cut(s) 985
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 4 cut(s) 37, 212, 930, 1332
BseDI CCNNGG 2 cut(s) 102, 928
BseGI GGATG 3 cut(s) 253, 407, 507
BseLI CCNNNNNNNGG 3 cut(s) 36, 935, 1337
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 985
BseRI GAGGAG 1 cut(s) 1443
BseXI GCAGC 5 cut(s) 81, 331, 428, 1294, 1355
BsgI GTGCAG 2 cut(s) 1362, 1433
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 57, 101, 190, 829
BshNI GGYRCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 232, 1163
BslFI GGGAC 1 cut(s) 1044
BslI CCNNNNNNNGG 3 cut(s) 36, 935, 1337
BsmFI GGGAC 1 cut(s) 1044
BsmI GAATGC 2 cut(s) 433, 1300
BsnI GGCC 4 cut(s) 57, 101, 190, 829
Bsp1286I GDGCHC 3 cut(s) 232, 499, 1163
Bsp143I GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
BspACI CCGC 5 cut(s) 7, 98, 347, 1195, 1239
BspANI GGCC 4 cut(s) 57, 101, 190, 829
BspCNI CTCAG 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 189, 358, 1032
BspMAI CTGCAG 1 cut(s) 963
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 737
BspQI GCTCTTC 3 cut(s) 150, 482, 996
BspT107I GGYRCC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 1433
BsrBI CCGCTC 1 cut(s) 1195
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 985
BssECI CCNNGG 2 cut(s) 102, 928
BssMI GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 4 cut(s) 37, 212, 930, 1332
Bst4CI ACNGT 6 cut(s) 53, 259, 373, 1066, 1084, 1137
Bst6I CTCTTC 4 cut(s) 150, 482, 996, 1461
BstAFI CTTAAG 1 cut(s) 1433
BstC8I GCNNGC 5 cut(s) 59, 162, 349, 810, 1200
BstDEI CTNAG 6 cut(s) 45, 143, 440, 528, 582, 1302
BstF5I GGATG 3 cut(s) 253, 407, 507
BstKTI GATC 6 cut(s) 134, 507, 745, 1145, 1399, 1419
BstMBI GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 7 cut(s) 32, 41, 923, 1192, 1250, 1295, 1304
BstNI CCWGG 4 cut(s) 37, 212, 930, 1332
BstNSI RCATGY 1 cut(s) 1053
BstSCI CCNGG 4 cut(s) 35, 210, 928, 1330
BstSFI CTRYAG 5 cut(s) 258, 369, 789, 959, 1311
BstV1I GCAGC 5 cut(s) 81, 331, 428, 1294, 1355
BstXI CCANNNNNNTGG 2 cut(s) 65, 1369
BsuRI GGCC 4 cut(s) 57, 101, 190, 829
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 253, 407, 507
BtsIMutI CAGTG 2 cut(s) 58, 417
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 5 cut(s) 59, 162, 349, 810, 1200
Cfr13I GGNCC 4 cut(s) 188, 436, 964, 1031
CseI GACGC 1 cut(s) 207
CsiI ACCWGGT 1 cut(s) 1330
Csp6I GTAC 4 cut(s) 4, 357, 510, 1328
CviAII CATG 1 cut(s) 1050
CviQI GTAC 4 cut(s) 4, 357, 510, 1328
DdeI CTNAG 6 cut(s) 45, 143, 440, 528, 582, 1302
DpnI GATC 6 cut(s) 133, 506, 744, 1144, 1398, 1418
DpnII GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
DraI TTTAAA 1 cut(s) 885
EaeI YGGCCR 2 cut(s) 55, 99
Eam1104I CTCTTC 4 cut(s) 150, 482, 996, 1461
EarI CTCTTC 4 cut(s) 150, 482, 996, 1461
EciI GGCGGA 1 cut(s) 1254
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 2 cut(s) 232, 499
Eco47I GGWCC 3 cut(s) 436, 964, 1031
Eco53kI GAGCTC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 867, 1020
EcoICRI GAGCTC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 4 cut(s) 35, 210, 928, 1330
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 232, 499
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 1053
FaqI GGGAC 1 cut(s) 1044
FatI CATG 1 cut(s) 1049
FauI CCCGC 1 cut(s) 340
FbaI TGATCA 2 cut(s) 504, 1396
Fnu4HI GCNGC 7 cut(s) 70, 99, 345, 417, 1196, 1308, 1344
FokI GGATG 3 cut(s) 260, 414, 514
FriOI GRGCYC 2 cut(s) 232, 499
Fsp4HI GCNGC 7 cut(s) 70, 99, 345, 417, 1196, 1308, 1344
FspBI CTAG 3 cut(s) 306, 968, 1245
GluI GCNGC 7 cut(s) 70, 99, 345, 417, 1196, 1308, 1344
GsuI CTGGAG 2 cut(s) 233, 1002
HaeIII GGCC 4 cut(s) 57, 101, 190, 829
HgaI GACGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 1053
HindIII AAGCTT 2 cut(s) 220, 890
HinfI GANTC 1 cut(s) 933
HphI GGTGA 8 cut(s) 370, 566, 581, 610, 700, 1003, 1115, 1274
Hpy166II GTNNAC 2 cut(s) 1133, 1441
Hpy188I TCNGA 8 cut(s) 501, 517, 628, 717, 938, 1014, 1168, 1293
Hpy188III TCNNGA 1 cut(s) 1091
Hpy8I GTNNAC 2 cut(s) 1133, 1441
HpyAV CCTTC 7 cut(s) 81, 392, 602, 659, 943, 1264, 1313
HpyCH4III ACNGT 6 cut(s) 53, 259, 373, 1066, 1084, 1137
HpyCH4V TGCA 8 cut(s) 405, 917, 961, 1053, 1343, 1381, 1388, 1414
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 41, 923, 1192, 1250, 1295, 1304
HpyF3I CTNAG 6 cut(s) 45, 143, 440, 528, 582, 1302
Hsp92II CATG 1 cut(s) 1053
KpnI GGTACC 1 cut(s) 360
Ksp22I TGATCA 2 cut(s) 504, 1396
Kzo9I GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
LguI GCTCTTC 3 cut(s) 150, 482, 996
LmnI GCTCC 4 cut(s) 214, 227, 235, 1241
Lsp1109I GCAGC 5 cut(s) 81, 331, 428, 1294, 1355
LweI GCATC 7 cut(s) 129, 157, 331, 392, 459, 1029, 1276
MabI ACCWGGT 1 cut(s) 1330
MaeI CTAG 3 cut(s) 306, 968, 1245
MaeIII GTNAC 8 cut(s) 178, 238, 253, 475, 554, 1103, 1279, 1500
MalI GATC 6 cut(s) 133, 506, 744, 1144, 1398, 1418
MbiI CCGCTC 1 cut(s) 1195
MboI GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
MfeI CAATTG 1 cut(s) 1149
MhlI GDGCHC 3 cut(s) 232, 499, 1163
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 9 cut(s) 111, 174, 755, 884, 906, 921, 1139, 1434, 1484
MslI CAYNNNNRTG 1 cut(s) 455
Msp20I TGGCCA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 1433
MspR9I CCNGG 4 cut(s) 37, 212, 930, 1332
MunI CAATTG 1 cut(s) 1149
Mva1269I GAATGC 2 cut(s) 433, 1300
MvaI CCWGG 4 cut(s) 37, 212, 930, 1332
MwoI GCNNNNNNNGC 7 cut(s) 32, 41, 923, 1192, 1250, 1295, 1304
NdeII GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
NlaIII CATG 1 cut(s) 1053
NlaIV GGNNCC 3 cut(s) 189, 358, 1032
NmuCI GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
NspI RCATGY 1 cut(s) 1053
PaqCI CACCTGC 1 cut(s) 310
PceI AGGCCT 1 cut(s) 829
PciSI GCTCTTC 3 cut(s) 150, 482, 996
PctI GAATGC 2 cut(s) 433, 1300
PfeI GAWTC 1 cut(s) 933
PflFI GACNNNGTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 7 cut(s) 71, 100, 346, 418, 1197, 1309, 1345
Ple19I CGATCG 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 964
PshBI ATTAAT 1 cut(s) 1484
PsiI TTATAA 1 cut(s) 1513
Psp124BI GAGCTC 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 4 cut(s) 35, 210, 928, 1330
PspGI CCWGG 4 cut(s) 35, 210, 928, 1330
PspN4I GGNNCC 3 cut(s) 189, 358, 1032
PspPI GGNCC 4 cut(s) 188, 436, 964, 1031
PspPPI RGGWCCY 1 cut(s) 964
PstI CTGCAG 1 cut(s) 963
PsyI GACNNNGTC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 4 cut(s) 5, 358, 511, 1329
RsaNI GTAC 4 cut(s) 4, 357, 510, 1328
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 232
SapI GCTCTTC 3 cut(s) 150, 482, 996
SaqAI TTAA 9 cut(s) 111, 174, 755, 884, 906, 921, 1139, 1434, 1484
SatI GCNGC 7 cut(s) 70, 99, 345, 417, 1196, 1308, 1344
Sau3AI GATC 6 cut(s) 131, 504, 742, 1142, 1396, 1416
Sau96I GGNCC 4 cut(s) 188, 436, 964, 1031
ScrFI CCNGG 4 cut(s) 37, 212, 930, 1332
SduI GDGCHC 3 cut(s) 232, 499, 1163
SexAI ACCWGGT 1 cut(s) 1330
SfaNI GCATC 7 cut(s) 129, 157, 331, 392, 459, 1029, 1276
SfcI CTRYAG 5 cut(s) 258, 369, 789, 959, 1311
SinI GGWCC 3 cut(s) 436, 964, 1031
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 1433
SmoI CTYRAG 1 cut(s) 1433
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 5 cut(s) 7, 98, 347, 1195, 1239
SspI AATATT 1 cut(s) 801
SspMI CTAG 3 cut(s) 306, 968, 1245
SstI GAGCTC 1 cut(s) 232
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 4 cut(s) 35, 210, 928, 1330
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 6 cut(s) 53, 259, 373, 1066, 1084, 1137
TaqI TCGA 2 cut(s) 642, 1020
TatI WGTACW 1 cut(s) 509
TauI GCSGC 2 cut(s) 101, 1198
TfiI GAWTC 1 cut(s) 933
Tru1I TTAA 9 cut(s) 111, 174, 755, 884, 906, 921, 1139, 1434, 1484
Tru9I TTAA 9 cut(s) 111, 174, 755, 884, 906, 921, 1139, 1434, 1484
TscAI CASTG 2 cut(s) 58, 417
TseFI GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
TseI GCWGC 5 cut(s) 69, 344, 416, 1307, 1343
Tsp45I GTSAC 6 cut(s) 178, 238, 253, 475, 554, 1103
TspDTI ATGAA 4 cut(s) 440, 663, 686, 1479
TspRI CASTG 2 cut(s) 58, 417
Tth111I GACNNNGTC 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 1433
VpaK11BI GGWCC 3 cut(s) 436, 964, 1031
VspI ATTAAT 1 cut(s) 1484
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 3 cut(s) 306, 968, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.