Rorug03G0349000
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004623
Physical Location & Seq
Reverse (-)
42578039 .. 42581145
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0349000.1

Sequence Viewer

Length: 546 bp
ATGGGGCTTAGTTTAGAGATACATGCAATTGAGGTTGTTGGGTATCAGAAAGTAGGGAACTTTGTTTCTGGGGAATGGCATATGTGCTTTGCTGAGTTAGGAAAGGTACGAGCTAGGCGCCCTCAACAAAAGAAAAAGTTCCAAAGAGACGAGGGCTTTAGGAGACGTGTTTCCATGTTTTCATCTGGTTGGCGGATGGGACAATCAGTAAAAATTAACACCGCTTATCTCAGTGAGCTGATTTTGAAAGAGTGGAAGAAAAAGAAGCATGCACATTGGCGCTACAGAAACGCACGTACAGAGTTGATGACACACGATATTGGTCACATTAAACGAACTTGGAGAAAGGTTTTGCGCATTAGGAGGCAAAAGCATCGTGAACAAAACAGCTTTTTGGCTAAGTTCTTCATCAAGCGTTTTGAGGATTTGAAACATGATATTGAGAACTCTTCCAATAATTGGACCAAGGGTGTTGCAGTAAGGGAATTATCTAACTTCATGTATGGGCAACGATTGTTGACAAATGGATGGCTCAGATGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006457 GO:0006458 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0017076 GO:0022626 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042788 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044743 GO:0045041 GO:0045184 GO:0046686 GO:0046872 GO:0046907 GO:0046914 GO:0050896 GO:0051082 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061077 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072655 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1990542 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

181

Amino Acids

21.86

Weight (kDa)

10.89

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 1 cut(s) 459
AciI CCGC 2 cut(s) 193, 222
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 2 cut(s) 108, 298
AfiI CCNNNNNNNGG 1 cut(s) 459
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 247, 430
AjiI CACGTC 1 cut(s) 167
AluBI AGCT 3 cut(s) 113, 238, 390
AluI AGCT 3 cut(s) 113, 238, 390
Alw26I GTCTC 2 cut(s) 141, 157
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 3 cut(s) 120, 282, 357
AspS9I GGNCC 1 cut(s) 462
AvaII GGWCC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 117
BccI CCATC 3 cut(s) 190, 522, 531
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BcoDI GTCTC 2 cut(s) 141, 157
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 283
BfoI RGCGCY 2 cut(s) 121, 283
Bme18I GGWCC 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 119
BmsI GCATC 1 cut(s) 382
BsaAI YACGTR 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 465
Bsc4I CCNNNNNNNGG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 201, 533
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 84, 244
BshNI GGYRCC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 2 cut(s) 141, 157
BsmBI CGTCTC 2 cut(s) 141, 157
BsmFI GGGAC 1 cut(s) 213
BspACI CCGC 2 cut(s) 193, 222
BspCNI CTCAG 3 cut(s) 85, 243, 546
BspLI GGNNCC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 5 cut(s) 8, 93, 230, 399, 533
BstF5I GGATG 2 cut(s) 201, 533
BstH2I RGCGCY 2 cut(s) 121, 283
BstHHI GCGC 3 cut(s) 120, 282, 357
BstMAI GTCTC 2 cut(s) 141, 157
BstNSI RCATGY 2 cut(s) 26, 272
BstSFI CTRYAG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 167
BtsCI GGATG 2 cut(s) 201, 533
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 3 cut(s) 120, 282, 357
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 107, 297
CviAII CATG 5 cut(s) 23, 175, 269, 434, 499
CviJI RGCY 7 cut(s) 7, 113, 156, 238, 390, 398, 532
CviKI_1 RGCY 7 cut(s) 7, 113, 156, 238, 390, 398, 532
CviQI GTAC 2 cut(s) 107, 297
DdeI CTNAG 5 cut(s) 8, 93, 230, 399, 533
DinI GGCGCC 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 465
EgeI GGCGCC 1 cut(s) 119
EheI GGCGCC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 2 cut(s) 141, 157
FaeI CATG 5 cut(s) 26, 178, 272, 437, 502
FaiI YATR 8 cut(s) 24, 81, 83, 176, 270, 435, 500, 504
FaqI GGGAC 1 cut(s) 213
FatI CATG 5 cut(s) 22, 174, 268, 433, 498
FauNDI CATATG 1 cut(s) 81
FokI GGATG 2 cut(s) 208, 540
FspBI CTAG 1 cut(s) 114
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 3 cut(s) 119, 281, 356
HaeII RGCGCY 2 cut(s) 121, 283
HhaI GCGC 3 cut(s) 120, 282, 357
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 5 cut(s) 26, 178, 272, 437, 502
Hin6I GCGC 3 cut(s) 118, 280, 355
HinP1I GCGC 3 cut(s) 118, 280, 355
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
Hpy166II GTNNAC 2 cut(s) 380, 519
Hpy188I TCNGA 2 cut(s) 48, 536
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 380, 519
HpyCH4IV ACGT 2 cut(s) 166, 295
HpyCH4V TGCA 3 cut(s) 26, 272, 476
HpyF3I CTNAG 5 cut(s) 8, 93, 230, 399, 533
HpySE526I ACGT 2 cut(s) 166, 295
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 5 cut(s) 26, 178, 272, 437, 502
HspAI GCGC 3 cut(s) 118, 280, 355
KasI GGCGCC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 54, 171
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 166, 295
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 3 cut(s) 268, 397, 441
MfeI CAATTG 1 cut(s) 27
MluCI AATT 4 cut(s) 27, 213, 457, 485
Mly113I GGCGCC 1 cut(s) 118
MnlI CCTC 5 cut(s) 25, 132, 145, 357, 415
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 216, 330
MunI CAATTG 1 cut(s) 27
NarI GGCGCC 1 cut(s) 118
NdeI CATATG 1 cut(s) 81
NlaIII CATG 5 cut(s) 26, 178, 272, 437, 502
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 323
NsbI TGCGCA 1 cut(s) 356
NspI RCATGY 2 cut(s) 26, 272
PaeI GCATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 459
PluTI GGCGCC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 462
RsaI GTAC 2 cut(s) 108, 298
RsaNI GTAC 2 cut(s) 107, 297
SaqAI TTAA 2 cut(s) 216, 330
Sau96I GGNCC 1 cut(s) 462
SetI ASST 8 cut(s) 36, 108, 115, 169, 240, 298, 351, 392
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 283
SfoI GGCGCC 1 cut(s) 119
SinI GGWCC 1 cut(s) 462
SphI GCATGC 1 cut(s) 272
Sse9I AATT 4 cut(s) 27, 213, 457, 485
SsiI CCGC 2 cut(s) 193, 222
SspDI GGCGCC 1 cut(s) 117
SspMI CTAG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 465
TaiI ACGT 2 cut(s) 169, 298
TasI AATT 4 cut(s) 27, 213, 457, 485
Tru1I TTAA 2 cut(s) 216, 330
Tru9I TTAA 2 cut(s) 216, 330
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 171, 397, 487
TspRI CASTG 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 462
XceI RCATGY 2 cut(s) 26, 272
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.