FvH4_2g19880

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16796137 .. 16798310
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19880.t1

Sequence Viewer

Length: 1110 bp
ATGTCAACACCTCCTAGGGTTTGTTCCAGTGTCACCATGGCTGTTGCCCTAGTATTAATGGTGATACTGCCTGGACCTCCTCAAGCCGAGGCAGCTCGCGCTTTCTTTGTGTTTGGAGACTCACTTGTGGACAATGGCAACAACAACTACTTGGCCACCACTGCACGTGCCGATTCTCCTCCCTACGGAATTGATTTCCCGACCCACCGCCCCACCGGCCACTTCTCCAACGGTTTGAACCTCCCTGACCTGGTCAGTGAACAAATGGGATCAGAGCTACTCTTGCCATACTTAAGCAGTGAGCTTACCGGACAAAAGCTGCTTACTGGTGCCAACTTTGCTTCTGCTGGAATTGGAATCCTCAATGATACTGGGGTTCAATTTGTCAACATAATAAGGATCTTCAAGCAGTTTGAGCTGTTCCAGCAATACCAACAACGAGTGAGTGCCCTAATCGGAGGAGCTCAAGCCAAGAGGCTAGTAAACGATGCTCTTGTCCTTGTAACTCTTGGCGGCAATGACTTCGTTAACAACTATTTTTTGGTACCCTTCTCTGCAAGATCCCGCCAGTACTCTATTTCTCAGTACTCCCAGTACCTCATCTCCGAGTACCGCAAAATTCTTCTGAGGCTATATGAATTAGGAGGGAGAAGGGTGTTGGTGACTGGTACAGGTCCATTGGGCTGTGTTCCGGCCGCGATGGCGCAGAGGAGTAGGAATGGTGAATGTGCACCAGAGCTGCAAAGGGCAGCAGCCATCTTCAATCCCTTGCTTGTACAGATGGTTCAGGGACTCAACGCACAGCTTGGTACTGAAGCTTTTGTTGCTGCAAATGCTCATGCAAGTATGGACTTCCTCAGCAACCCCCGGAAATATGGCTTTGTTACATCAAGGGTGGTATGTTGCGGGCAAGGACCGTACAATGGGGTGGGACTGTGTACCCCGTTGTCGAATCTGTGCTCTAACCGTGATGTCTATGCATTTTGGGATCCTTTCCATCCATCCGAAAGGGCGAACCGGCTGATTGTGCAGACAATGATGACCGGATCTAGCAAGTACATGAACCCTATGAACCTGAGCACCATCATGGCCATGGACTCCAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

370

Amino Acids

40.22

Weight (kDa)

8.82

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 343 2.2e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012747)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 544
AccB1I GGYRCC 2 cut(s) 329, 544
AccII CGCG 2 cut(s) 99, 698
AciI CCGC 6 cut(s) 208, 513, 565, 613, 696, 906
AclWI GGATC 6 cut(s) 277, 407, 555, 983, 996, 1054
AcoI YGGCCR 4 cut(s) 153, 217, 693, 1089
AcsI RAATTY 1 cut(s) 618
AcuI CTGAAG 1 cut(s) 834
AcvI CACGTG 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 185, 250, 923
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 4 cut(s) 238, 380, 406, 763
AjnI CCWGG 3 cut(s) 70, 249, 1100
AluBI AGCT 9 cut(s) 95, 277, 304, 319, 418, 464, 739, 805, 818
AluI AGCT 9 cut(s) 95, 277, 304, 319, 418, 464, 739, 805, 818
Alw21I GWGCWC 4 cut(s) 466, 733, 962, 1082
Alw26I GTCTC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 6 cut(s) 277, 407, 555, 983, 996, 1054
AoxI GGCC 4 cut(s) 153, 217, 693, 1089
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 6 cut(s) 92, 319, 739, 749, 752, 827
ApoI RAATTY 1 cut(s) 618
AseI ATTAAT 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 544
AspA2I CCTAGG 1 cut(s) 14
AspLEI GCGC 2 cut(s) 101, 706
AspS9I GGNCC 3 cut(s) 74, 674, 914
AsuC2I CCSGG 1 cut(s) 868
AsuHPI GGTGA 4 cut(s) 25, 73, 673, 734
AvaII GGWCC 3 cut(s) 74, 674, 914
AvrII CCTAGG 1 cut(s) 14
BaeGI GKGCMC 2 cut(s) 451, 733
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BalI TGGCCA 2 cut(s) 155, 1091
BamHI GGATCC 1 cut(s) 988
BanI GGYRCC 2 cut(s) 329, 544
BanII GRGCYC 1 cut(s) 466
BbrPI CACGTG 1 cut(s) 167
Bbv12I GWGCWC 4 cut(s) 466, 733, 962, 1082
BbvCI CCTCAGC 1 cut(s) 857
BbvI GCAGC 6 cut(s) 104, 306, 726, 761, 764, 814
BccI CCATC 6 cut(s) 694, 764, 775, 1005, 1009, 1091
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BciT130I CCWGG 3 cut(s) 72, 251, 1102
BcnI CCSGG 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 5 cut(s) 15, 50, 479, 1050, 1108
BfrI CTTAAG 1 cut(s) 292
BglI GCCNNNNNGGC 2 cut(s) 216, 701
BisI GCNGC 8 cut(s) 93, 320, 514, 696, 740, 750, 753, 828
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 8 cut(s) 94, 321, 515, 697, 741, 751, 754, 829
BmcAI AGTACT 2 cut(s) 572, 587
Bme1390I CCNGG 4 cut(s) 72, 251, 868, 1102
Bme18I GGWCC 3 cut(s) 74, 674, 914
BmgT120I GGNCC 3 cut(s) 74, 674, 914
BmiI GGNNCC 3 cut(s) 331, 546, 990
BmrFI CCNGG 4 cut(s) 72, 251, 868, 1102
BmrI ACTGGG 2 cut(s) 381, 586
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 2 cut(s) 381, 586
BpmI CTGGAG 1 cut(s) 1084
Bpu10I CCTNAGC 2 cut(s) 857, 1076
BpuEI CTTGAG 2 cut(s) 66, 450
BpuMI CCSGG 1 cut(s) 868
BsaAI YACGTR 1 cut(s) 167
BsaJI CCNNGG 5 cut(s) 14, 36, 87, 866, 1092
BsaWI WCCGGW 2 cut(s) 308, 1043
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 250, 923
Bse118I RCCGGY 2 cut(s) 215, 1017
Bse1I ACTGG 6 cut(s) 27, 331, 376, 568, 592, 670
Bse3DI GCAATG 1 cut(s) 523
BseBI CCWGG 3 cut(s) 72, 251, 1102
BseDI CCNNGG 5 cut(s) 14, 36, 87, 866, 1092
BseGI GGATG 2 cut(s) 997, 1001
BseLI CCNNNNNNNGG 3 cut(s) 185, 250, 923
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 4 cut(s) 596, 617, 871, 1067
BseNI ACTGG 6 cut(s) 27, 331, 376, 568, 592, 670
BseRI GAGGAG 4 cut(s) 69, 168, 474, 724
BseSI GKGCMC 2 cut(s) 451, 733
BseX3I CGGCCG 1 cut(s) 693
BseXI GCAGC 6 cut(s) 104, 306, 726, 761, 764, 814
BsgI GTGCAG 2 cut(s) 147, 1049
Bsh1236I CGCG 2 cut(s) 99, 698
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 4 cut(s) 155, 219, 695, 1091
BshNI GGYRCC 2 cut(s) 329, 544
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 4 cut(s) 466, 733, 962, 1082
BsiSI CCGG 6 cut(s) 216, 309, 692, 868, 1018, 1044
BslFI GGGAC 2 cut(s) 804, 945
BslI CCNNNNNNNGG 3 cut(s) 185, 250, 923
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 804, 945
BsnI GGCC 4 cut(s) 155, 219, 695, 1091
Bsp1286I GDGCHC 5 cut(s) 451, 466, 733, 962, 1082
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 5 cut(s) 269, 399, 560, 988, 1046
Bsp19I CCATGG 2 cut(s) 36, 1092
BspACI CCGC 6 cut(s) 208, 513, 565, 613, 696, 906
BspANI GGCC 4 cut(s) 155, 219, 695, 1091
BspCNI CTCAG 4 cut(s) 595, 618, 870, 1068
BspFNI CGCG 2 cut(s) 99, 698
BspLI GGNNCC 3 cut(s) 331, 546, 990
BspPI GGATC 6 cut(s) 277, 407, 555, 983, 996, 1054
BspT107I GGYRCC 2 cut(s) 329, 544
BspTI CTTAAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 2 cut(s) 215, 1017
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 6 cut(s) 27, 331, 376, 568, 592, 670
BssAI RCCGGY 2 cut(s) 215, 1017
BssECI CCNNGG 5 cut(s) 14, 36, 87, 866, 1092
BssMI GATC 5 cut(s) 269, 399, 560, 988, 1046
BssT1I CCWWGG 3 cut(s) 14, 36, 1092
Bst2UI CCWGG 3 cut(s) 72, 251, 1102
Bst4CI ACNGT 4 cut(s) 233, 918, 936, 968
BstAFI CTTAAG 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 97, 908
BstDEI CTNAG 4 cut(s) 582, 626, 857, 1076
BstDSI CCRYGG 2 cut(s) 36, 1092
BstF5I GGATG 2 cut(s) 997, 1001
BstFNI CGCG 2 cut(s) 99, 698
BstHHI GCGC 2 cut(s) 101, 706
BstKTI GATC 5 cut(s) 272, 402, 563, 991, 1049
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 5 cut(s) 269, 399, 560, 988, 1046
BstMCI CGRYCG 1 cut(s) 696
BstNI CCWGG 3 cut(s) 72, 251, 1102
BstSCI CCNGG 4 cut(s) 70, 249, 866, 1100
BstSLI GKGCMC 2 cut(s) 451, 733
BstUI CGCG 2 cut(s) 99, 698
BstV1I GCAGC 6 cut(s) 104, 306, 726, 761, 764, 814
BstX2I RGATCY 4 cut(s) 399, 560, 988, 1046
BstYI RGATCY 4 cut(s) 399, 560, 988, 1046
BstZI CGGCCG 1 cut(s) 693
BsuRI GGCC 4 cut(s) 155, 219, 695, 1091
BtgI CCRYGG 2 cut(s) 36, 1092
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 997, 1001
BtsI GCAGTG 2 cut(s) 159, 304
BtsIMutI CAGTG 4 cut(s) 34, 159, 262, 304
Cac8I GCNNGC 2 cut(s) 97, 908
CfoI GCGC 2 cut(s) 101, 706
Cfr10I RCCGGY 2 cut(s) 215, 1017
Cfr13I GGNCC 3 cut(s) 74, 674, 914
CsiI ACCWGGT 1 cut(s) 249
CviAII CATG 5 cut(s) 37, 839, 1060, 1087, 1093
DdeI CTNAG 4 cut(s) 582, 626, 857, 1076
DpnI GATC 5 cut(s) 271, 401, 562, 990, 1048
DpnII GATC 5 cut(s) 269, 399, 560, 988, 1046
EaeI YGGCCR 4 cut(s) 153, 217, 693, 1089
EagI CGGCCG 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 464
EclXI CGGCCG 1 cut(s) 693
Eco130I CCWWGG 3 cut(s) 14, 36, 1092
Eco24I GRGCYC 1 cut(s) 466
Eco47I GGWCC 3 cut(s) 74, 674, 914
Eco52I CGGCCG 1 cut(s) 693
Eco53kI GAGCTC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 834
Eco72I CACGTG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 70, 249, 1100
EcoT14I CCWWGG 3 cut(s) 14, 36, 1092
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 3 cut(s) 14, 36, 1092
FaeI CATG 5 cut(s) 40, 842, 1063, 1090, 1096
FaqI GGGAC 2 cut(s) 804, 945
FatI CATG 5 cut(s) 36, 838, 1059, 1086, 1092
FauI CCCGC 2 cut(s) 572, 899
Fnu4HI GCNGC 8 cut(s) 93, 320, 514, 696, 740, 750, 753, 828
FokI GGATG 2 cut(s) 984, 988
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 8 cut(s) 93, 320, 514, 696, 740, 750, 753, 828
FspBI CTAG 5 cut(s) 15, 50, 479, 1050, 1108
GlaI GCGC 2 cut(s) 100, 705
GluI GCNGC 8 cut(s) 93, 320, 514, 696, 740, 750, 753, 828
GsuI CTGGAG 1 cut(s) 1084
HaeIII GGCC 4 cut(s) 155, 219, 695, 1091
HapII CCGG 6 cut(s) 216, 309, 692, 868, 1018, 1044
HhaI GCGC 2 cut(s) 101, 706
Hin1II CATG 5 cut(s) 40, 842, 1063, 1090, 1096
Hin6I GCGC 2 cut(s) 99, 704
HinP1I GCGC 2 cut(s) 99, 704
HincII GTYRAC 3 cut(s) 6, 388, 529
HindII GTYRAC 3 cut(s) 6, 388, 529
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 6 cut(s) 119, 173, 357, 792, 952, 1097
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 6 cut(s) 216, 309, 692, 868, 1018, 1044
HphI GGTGA 4 cut(s) 25, 73, 673, 734
Hpy166II GTNNAC 8 cut(s) 6, 130, 260, 388, 484, 529, 731, 939
Hpy188I TCNGA 5 cut(s) 274, 458, 607, 627, 1006
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 8 cut(s) 6, 130, 260, 388, 484, 529, 731, 939
HpyAV CCTTC 2 cut(s) 559, 645
HpyCH4III ACNGT 4 cut(s) 233, 918, 936, 968
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 8 cut(s) 164, 557, 731, 742, 830, 842, 980, 1030
HpyF3I CTNAG 4 cut(s) 582, 626, 857, 1076
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 5 cut(s) 40, 842, 1063, 1090, 1096
HspAI GCGC 2 cut(s) 99, 704
KpnI GGTACC 1 cut(s) 548
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 5 cut(s) 269, 399, 560, 988, 1046
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 6 cut(s) 104, 306, 726, 761, 764, 814
LweI GCATC 1 cut(s) 478
MabI ACCWGGT 1 cut(s) 249
MaeI CTAG 5 cut(s) 15, 50, 479, 1050, 1108
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 4 cut(s) 31, 502, 661, 883
MalI GATC 5 cut(s) 271, 401, 562, 990, 1048
MboI GATC 5 cut(s) 269, 399, 560, 988, 1046
MboII GAAGA 3 cut(s) 394, 614, 751
MflI RGATCY 4 cut(s) 399, 560, 988, 1046
MhlI GDGCHC 5 cut(s) 451, 466, 733, 962, 1082
MlsI TGGCCA 2 cut(s) 155, 1091
MluCI AATT 5 cut(s) 189, 351, 380, 618, 638
MluNI TGGCCA 2 cut(s) 155, 1091
MlyI GAGTC 3 cut(s) 113, 786, 1091
MmeI TCCRAC 1 cut(s) 252
Mox20I TGGCCA 2 cut(s) 155, 1091
Mph1103I ATGCAT 1 cut(s) 982
MscI TGGCCA 2 cut(s) 155, 1091
MseI TTAA 3 cut(s) 56, 293, 528
MslI CAYNNNNRTG 2 cut(s) 1085, 1091
Msp20I TGGCCA 2 cut(s) 155, 1091
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 6 cut(s) 216, 309, 692, 868, 1018, 1044
MspR9I CCNGG 4 cut(s) 72, 251, 868, 1102
MvaI CCWGG 3 cut(s) 72, 251, 1102
MvnI CGCG 2 cut(s) 99, 698
NciI CCSGG 1 cut(s) 868
NcoI CCATGG 2 cut(s) 36, 1092
NdeII GATC 5 cut(s) 269, 399, 560, 988, 1046
NlaIII CATG 5 cut(s) 40, 842, 1063, 1090, 1096
NlaIV GGNNCC 3 cut(s) 331, 546, 990
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 31, 661
NsiI ATGCAT 1 cut(s) 982
PfeI GAWTC 3 cut(s) 173, 357, 952
PflFI GACNNNGTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 1100
PkrI GCNGC 8 cut(s) 94, 321, 515, 697, 741, 751, 754, 829
PleI GAGTC 3 cut(s) 113, 786, 1091
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 3 cut(s) 113, 786, 1091
Ppu21I YACGTR 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 466
Psp6I CCWGG 3 cut(s) 70, 249, 1100
PspCI CACGTG 1 cut(s) 167
PspGI CCWGG 3 cut(s) 70, 249, 1100
PspN4I GGNNCC 3 cut(s) 331, 546, 990
PspPI GGNCC 3 cut(s) 74, 674, 914
PsrI GAACNNNNNNTAC 2 cut(s) 768, 800
PsuI RGATCY 4 cut(s) 399, 560, 988, 1046
PsyI GACNNNGTC 1 cut(s) 251
RseI CAYNNNNRTG 2 cut(s) 1085, 1091
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 3 cut(s) 56, 293, 528
SatI GCNGC 8 cut(s) 93, 320, 514, 696, 740, 750, 753, 828
Sau3AI GATC 5 cut(s) 269, 399, 560, 988, 1046
Sau96I GGNCC 3 cut(s) 74, 674, 914
ScaI AGTACT 2 cut(s) 572, 587
SchI GAGTC 3 cut(s) 113, 786, 1091
ScrFI CCNGG 4 cut(s) 72, 251, 868, 1102
SduI GDGCHC 5 cut(s) 451, 466, 733, 962, 1082
SexAI ACCWGGT 1 cut(s) 249
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 3 cut(s) 74, 674, 914
SmiMI CAYNNNNRTG 2 cut(s) 1085, 1091
SmlI CTYRAG 3 cut(s) 81, 292, 465
SmoI CTYRAG 3 cut(s) 81, 292, 465
Sse9I AATT 5 cut(s) 189, 351, 380, 618, 638
SsiI CCGC 6 cut(s) 208, 513, 565, 613, 696, 906
SspMI CTAG 5 cut(s) 15, 50, 479, 1050, 1108
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 4 cut(s) 70, 249, 866, 1100
StyI CCWWGG 3 cut(s) 14, 36, 1092
TaaI ACNGT 4 cut(s) 233, 918, 936, 968
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 950
TasI AATT 5 cut(s) 189, 351, 380, 618, 638
TatI WGTACW 4 cut(s) 570, 585, 775, 1056
TauI GCSGC 2 cut(s) 516, 698
TfiI GAWTC 3 cut(s) 173, 357, 952
Tru1I TTAA 3 cut(s) 56, 293, 528
Tru9I TTAA 3 cut(s) 56, 293, 528
TscAI CASTG 4 cut(s) 34, 166, 262, 304
TseFI GTSAC 2 cut(s) 31, 661
TseI GCWGC 6 cut(s) 92, 319, 739, 749, 752, 827
Tsp45I GTSAC 2 cut(s) 31, 661
TspDTI ATGAA 3 cut(s) 651, 1076, 1085
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 4 cut(s) 34, 166, 262, 304
Tth111I GACNNNGTC 1 cut(s) 251
Vha464I CTTAAG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 729
VpaK11BI GGWCC 3 cut(s) 74, 674, 914
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 2 cut(s) 34, 1090
XmaJI CCTAGG 1 cut(s) 14
XspI CTAG 5 cut(s) 15, 50, 479, 1050, 1108
ZrmI AGTACT 2 cut(s) 572, 587
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.