FvH4_2g21330

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005506
Physical Location & Seq
Reverse (-)
17740719 .. 17746005
5287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21330.t2

Sequence Viewer

Length: 2361 bp
ATGGCTCAAGCCACCAGGCATAGAGGAGGTGAGATGGACACAGCGTCTATAAAATGTCTAATCAATAGTATATCGCGATTGGTTCATCTAGTTTCATGCCAAACAGTGAAGTCTGTGCCTATTCAGAAGGTTTACAGAACCATAGTTGATGTATTGAAGCTTTTGAAGCCATTACTTGATGAGGTAGTTGATTACCATATCCCTTCAGATGATATTCTATTTCAAGAGTGTGAAGAACTGGACATGGTTGTCAATGAAGCCCGGGAATTCATTGAAAACTGGTCTCCAAAGTCGAGCAAACTATTAAGTGCTTTGCGGAGTGAGCCATTGTTGATAAAGATACAAAATTCATCGCTCAAGATTTGCTGTACATTAAGTAGATTATTACAGTCGTCTTCATCTCGTTCCGGTTTAATGGGTCTTCAGGAAATTGAACGTTTGAAGCCTGAAAGAGTAACAGAATACTTAGAAGAGGCTCTGAAAAGTCAAACAAAAGATTTCATGCCTTCCACCAAATATCTTATGAAAATTACTGAATTGCTTAGCTTGACTTCCAGCCAAGAACTGTTGAAAGAAAGTATTGCTGTAGAAAAGGAAAGAATGAATGTTGAAGTTCGTGATATTAGAGGGGAACTAGCTAAAATCGACCAAGTTGTGGTTCTTGTCTCCCATATTCGCGAATTCATGGTTAAAAGTGACCACATTACCGCATCTGGCATCCCAGTCCCTCCATACTTCCGCTGCCCTTTGTCTTCAGAGCTCATGTTGGATCCTGTGATTGTAGCTTCAGGTCAAACATACGAGAGAACTTCCATTCAGAAGTGGCTTGATCATGGGTTGATTATCTGCCCAAAGACCCGTCACAGGCTGACACATACAAACCTCATTCCTAATTATACGTTCAAAGCTATGGTAGAAAGTTGGTGTCAGGAAAATAATATTATACTTGCGATGAACTCTCACTGCACTAATGCTATCACTGTCCCATCTCCATCAGGTCACATCTCTCCTGAAGGTTTAATTCACACAGATACCCAGTACTCCATGCGCAGTAGCAATTCAACATCAAGATCCTCTGTTGAAGTTGAGAAGCAAAGAAAAGATGAATATCCTAGATTGAGTGGAGAAAAGTCCAATGGATGCCCTAGCGGTGAGAAAGGCCAGTCATCGCCAAAACAGTCATATATTCATAGCAGGAGTGAATCAGCCTCAAGTACTGTTTCCAGTGTTGATTATATGCCTCCCCCATCTATTAAGGTATCAGGGATATCCAATAAGCATCAAAAGGATAATGATTTTTCTGGAGAAATCACATCTGAGTATCCTGGTGCTTATACTCCAAATAAAGAATCAGGATTTTCCCCTGGGCTATTAGGAAAGAAGTCTCACCTTTTGAAAGCAAAAATAGAAGTGGCATCATGGCAGGACAGCCCTAATTACCCAAACAAACAGCTGCTTCCATTTTCTAGCTCAGAATCTGATGGTTTAACGACAACATCCCATGTCATGAAATTGATTGAAGACCTCAAGAGCCAATTGGACGATGTGCAAACTATGGCTGCAGAAGAATTGCGGCTTCTTGCAAAGCACAATATGGATAATCGCATTATTATAGGCCAGTGTGGTGCTATCACACCCTTGCTTTCGCTGTTATATTCAGAGGTGAAGATAATGCAAGAGCATGCTGTGACAGCTCTTTTGAATTTATCAATTAATGAAGACAATAAGGCCATGATTGCAGAAGCAGGAGCAATTGAACCACTAATCCATGTTCTGAAAACAGGAAATGATGGTGCCAAAGAAAATTCAGCTGCAGCTTTATTCAGCCTCTCTGTCTTGGATGAATACAAGGCAAAAATTGGCCGTTCTGGTGCAGTAAAGGCCTTGGTTGATCTTCTACGCTCCGGGACTCTTAGAGGGAAGAAAGATGCTGCTACAGCACTGTTCAATCTCTCAATTTTTCACGAAAATAAGGCTCGTCTAGTTCAAGCTGGGGCTGTGAAGTATCTTATTGAGTTGATGGATCCCGACACTGGGATGGCGGACAAGGCTGTTGCTCTTCTGGCAAATTTGTCCACTATTGCAGAGGGGCGCTTGGCAATTGCCCGGGGAGGAGGAATTCCGTTACTAGTTGAGATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATTCTGCCTCCGTTCTACTGCAACTGTGCCTTCATAGTCCAAAGTTTTGTACTATGGTTCTTCAGGAAGGAGCTGTCCCTCCGCTGGTTGCTTTATCTCAGTCTGGCACTCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCACTTCCGGAATCAGAGAGAAGGGGCTATGGGGAAGGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

787

Amino Acids

86.45

Weight (kDa)

7.59

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB2_N PF25240 14 - 151 5e-51 PUB2-like, N-terminal domain
U-box PF04564 246 - 317 1.5e-23 U-box domain
ARM_ARMC5 PF24768 502 - 679 2.3e-11 ARMC5
ARM_PUB PF25598 506 - 780 3.4e-26 Plant U-box protein ARM repeat region
Arm PF00514 537 - 574 1.4e-06 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 572 - 739 4.9e-13 ARMC5
Arm PF00514 576 - 615 3.5e-06 Armadillo/beta-catenin-like repeat
Arm PF00514 619 - 656 2.1e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 1793
AccB7I CCANNNNNTGG 1 cut(s) 655
AccII CGCG 2 cut(s) 76, 678
AccIII TCCGGA 1 cut(s) 2322
AciI CCGC 7 cut(s) 316, 708, 739, 1149, 1573, 2042, 2252
AclI AACGTT 1 cut(s) 436
AclWI GGATC 5 cut(s) 764, 777, 1065, 2018, 2031
AcoI YGGCCR 1 cut(s) 1861
AcsI RAATTY 8 cut(s) 266, 346, 680, 1702, 1804, 2068, 2118, 2170
AcuI CTGAAG 6 cut(s) 189, 407, 738, 771, 1032, 2216
AfaI GTAC 4 cut(s) 370, 1040, 1216, 2221
AfiI CCNNNNNNNGG 5 cut(s) 655, 864, 2033, 2034, 2254
AhdI GACNNNNNGTC 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 2128
AjnI CCWGG 3 cut(s) 14, 1324, 1363
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AloI GAACNNNNNNTCC 2 cut(s) 1749, 1781
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 3 cut(s) 288, 670, 1389
AlwI GGATC 5 cut(s) 764, 777, 1065, 2018, 2031
AlwNI CAGNNNCTG 1 cut(s) 1478
Ama87I CYCGRG 2 cut(s) 261, 2106
Aor13HI TCCGGA 1 cut(s) 2322
AoxI GGCC 5 cut(s) 1159, 1615, 1728, 1861, 1881
ApeKI GCWGC 6 cut(s) 741, 1453, 1559, 1811, 1814, 1931
ApoI RAATTY 8 cut(s) 266, 346, 680, 1702, 1804, 2068, 2118, 2170
ArsI GACNNNNNNTTYG 2 cut(s) 1681, 1713
AseI ATTAAT 1 cut(s) 1713
AspLEI GCGC 2 cut(s) 1050, 2094
AsuC2I CCSGG 5 cut(s) 262, 263, 1906, 2107, 2108
AsuHPI GGTGA 4 cut(s) 41, 1163, 1379, 1675
AvaI CYCGRG 2 cut(s) 261, 2106
BamHI GGATCC 2 cut(s) 769, 2023
BanI GGYRCC 1 cut(s) 1793
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 5 cut(s) 387, 413, 744, 1527, 1725
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 6 cut(s) 728, 1440, 1546, 1798, 1826, 1918
BccI CCATC 8 cut(s) 28, 994, 1000, 1255, 1475, 1784, 2014, 2032
BceAI ACGGC 1 cut(s) 1848
BciT130I CCWGG 3 cut(s) 16, 1326, 1365
BciVI GTATCC 1 cut(s) 1332
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 5 cut(s) 262, 263, 1906, 2107, 2108
BcoDI GTCTC 3 cut(s) 288, 670, 1389
BcuI ACTAGT 1 cut(s) 2128
BfaI CTAG 7 cut(s) 89, 635, 1113, 1146, 1467, 1982, 2129
BfmI CTRYAG 4 cut(s) 585, 1560, 1812, 1935
BfoI RGCGCY 1 cut(s) 2095
BfuI GTATCC 1 cut(s) 1332
BisI GCNGC 7 cut(s) 742, 1454, 1560, 1574, 1812, 1815, 1932
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 7 cut(s) 743, 1455, 1561, 1575, 1813, 1816, 1933
BmcAI AGTACT 2 cut(s) 1040, 1216
Bme1390I CCNGG 8 cut(s) 16, 262, 263, 1326, 1365, 1906, 2107, 2108
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 2 cut(s) 261, 2106
BmiI GGNNCC 3 cut(s) 771, 1795, 2025
BmrFI CCNGG 8 cut(s) 16, 262, 263, 1326, 1365, 1906, 2107, 2108
BmrI ACTGGG 3 cut(s) 716, 1030, 2043
BmsI GCATC 6 cut(s) 719, 726, 1130, 1288, 1424, 1918
BmuI ACTGGG 3 cut(s) 716, 1030, 2043
BpiI GAAGAC 5 cut(s) 387, 413, 744, 1527, 1725
BpmI CTGGAG 1 cut(s) 1323
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 341, 1195, 1511
BpuMI CCSGG 5 cut(s) 262, 263, 1906, 2107, 2108
BsaBI GATNNNNATC 1 cut(s) 1107
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 6 cut(s) 261, 1363, 1364, 1884, 2106, 2107
BsaWI WCCGGW 2 cut(s) 407, 2322
Bsc4I CCNNNNNNNGG 5 cut(s) 655, 864, 2033, 2034, 2254
Bse1I ACTGG 8 cut(s) 243, 284, 722, 1036, 1162, 1224, 1618, 2038
Bse8I GATNNNNATC 1 cut(s) 1107
BseAI TCCGGA 1 cut(s) 2322
BseBI CCWGG 3 cut(s) 16, 1326, 1365
BseDI CCNNGG 6 cut(s) 261, 1363, 1364, 1884, 2106, 2107
BseGI GGATG 5 cut(s) 717, 1145, 1496, 1846, 2043
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 5 cut(s) 655, 864, 2033, 2034, 2254
BseMII CTCAG 5 cut(s) 1308, 1485, 2168, 2282, 2326
BseNI ACTGG 8 cut(s) 243, 284, 722, 1036, 1162, 1224, 1618, 2038
BseRI GAGGAG 2 cut(s) 39, 2127
BseXI GCAGC 6 cut(s) 728, 1440, 1546, 1798, 1826, 1918
BseYI CCCAGC 1 cut(s) 1991
BsgI GTGCAG 2 cut(s) 949, 1893
Bsh1236I CGCG 2 cut(s) 76, 678
BshFI GGCC 5 cut(s) 1161, 1617, 1730, 1863, 1883
BshNI GGYRCC 1 cut(s) 1793
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 2 cut(s) 261, 2106
BsiSI CCGG 5 cut(s) 262, 408, 1905, 2107, 2323
BslFI GGGAC 4 cut(s) 710, 968, 1921, 2231
BslI CCNNNNNNNGG 5 cut(s) 655, 864, 2033, 2034, 2254
BsmAI GTCTC 3 cut(s) 288, 670, 1389
BsmFI GGGAC 4 cut(s) 710, 968, 1921, 2231
BsnI GGCC 5 cut(s) 1161, 1617, 1730, 1863, 1883
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 2 cut(s) 261, 2106
Bsp1286I GDGCHC 1 cut(s) 762
Bsp13I TCCGGA 1 cut(s) 2322
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 5 cut(s) 769, 829, 1070, 1891, 2023
Bsp1720I GCTNAGC 1 cut(s) 542
Bsp68I TCGCGA 2 cut(s) 76, 678
BspACI CCGC 7 cut(s) 316, 708, 739, 1149, 1573, 2042, 2252
BspANI GGCC 5 cut(s) 1161, 1617, 1730, 1863, 1883
BspCNI CTCAG 5 cut(s) 1309, 1484, 2167, 2281, 2325
BspEI TCCGGA 1 cut(s) 2322
BspFNI CGCG 2 cut(s) 76, 678
BspHI TCATGA 1 cut(s) 1506
BspLI GGNNCC 3 cut(s) 771, 1795, 2025
BspMAI CTGCAG 2 cut(s) 1564, 1816
BspPI GGATC 5 cut(s) 764, 777, 1065, 2018, 2031
BspQI GCTCTTC 1 cut(s) 2064
BspT107I GGYRCC 1 cut(s) 1793
BspTNI GGTCTC 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 368
BsrI ACTGG 8 cut(s) 243, 284, 722, 1036, 1162, 1224, 1618, 2038
BssECI CCNNGG 6 cut(s) 261, 1363, 1364, 1884, 2106, 2107
BssMI GATC 5 cut(s) 769, 829, 1070, 1891, 2023
BssT1I CCWWGG 1 cut(s) 1884
Bst2UI CCWGG 3 cut(s) 16, 1326, 1365
Bst4CI ACNGT 8 cut(s) 106, 390, 567, 982, 1179, 1219, 1944, 2196
Bst6I CTCTTC 2 cut(s) 465, 2064
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 1683
BstDEI CTNAG 8 cut(s) 466, 542, 1317, 1471, 1913, 2154, 2268, 2312
BstF5I GGATG 5 cut(s) 717, 1145, 1496, 1846, 2043
BstFNI CGCG 2 cut(s) 76, 678
BstH2I RGCGCY 1 cut(s) 2095
BstHHI GCGC 2 cut(s) 1050, 2094
BstKTI GATC 5 cut(s) 772, 832, 1073, 1894, 2026
BstMAI GTCTC 3 cut(s) 288, 670, 1389
BstMBI GATC 5 cut(s) 769, 829, 1070, 1891, 2023
BstMWI GCNNNNNNNGC 8 cut(s) 166, 322, 1691, 1736, 1880, 1937, 2048, 2063
BstNI CCWGG 3 cut(s) 16, 1326, 1365
BstNSI RCATGY 1 cut(s) 1685
BstSCI CCNGG 8 cut(s) 14, 260, 261, 1324, 1363, 1904, 2105, 2106
BstSFI CTRYAG 4 cut(s) 585, 1560, 1812, 1935
BstUI CGCG 2 cut(s) 76, 678
BstV1I GCAGC 6 cut(s) 728, 1440, 1546, 1798, 1826, 1918
BstV2I GAAGAC 5 cut(s) 387, 413, 744, 1527, 1725
BstX2I RGATCY 3 cut(s) 769, 1070, 2023
BstYI RGATCY 3 cut(s) 769, 1070, 2023
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 5 cut(s) 1161, 1617, 1730, 1863, 1883
BtgZI GCGATG 3 cut(s) 336, 965, 1152
BtsCI GGATG 5 cut(s) 717, 1145, 1496, 1846, 2043
BtsI GCAGTG 1 cut(s) 961
BtsIMutI CAGTG 7 cut(s) 111, 961, 978, 1231, 1625, 1940, 2031
BtuMI TCGCGA 2 cut(s) 76, 678
Cac8I GCNNGC 1 cut(s) 1683
CaiI CAGNNNCTG 1 cut(s) 1478
CciI TCATGA 1 cut(s) 1506
CfoI GCGC 2 cut(s) 1050, 2094
Cfr9I CCCGGG 2 cut(s) 261, 2106
CseI GACGC 1 cut(s) 33
Csp6I GTAC 4 cut(s) 369, 1039, 1215, 2220
CviQI GTAC 4 cut(s) 369, 1039, 1215, 2220
DdeI CTNAG 8 cut(s) 466, 542, 1317, 1471, 1913, 2154, 2268, 2312
DpnI GATC 5 cut(s) 771, 831, 1072, 1893, 2025
DpnII GATC 5 cut(s) 769, 829, 1070, 1891, 2023
DrdI GACNNNNNNGTC 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 43
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 1861
Eam1104I CTCTTC 2 cut(s) 465, 2064
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 2 cut(s) 465, 2064
EciI GGCGGA 1 cut(s) 2057
Ecl136II GAGCTC 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 1884
Eco147I AGGCCT 1 cut(s) 1883
Eco24I GRGCYC 1 cut(s) 762
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 1269
Eco53kI GAGCTC 1 cut(s) 760
Eco57I CTGAAG 6 cut(s) 189, 407, 738, 771, 1032, 2216
Eco88I CYCGRG 2 cut(s) 261, 2106
EcoICRI GAGCTC 1 cut(s) 760
EcoRI GAATTC 3 cut(s) 266, 680, 2118
EcoRII CCWGG 3 cut(s) 14, 1324, 1363
EcoRV GATATC 1 cut(s) 1269
EcoT14I CCWWGG 1 cut(s) 1884
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 1884
FaqI GGGAC 4 cut(s) 710, 968, 1921, 2231
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 7 cut(s) 742, 1454, 1560, 1574, 1812, 1815, 1932
FokI GGATG 5 cut(s) 704, 1152, 1483, 1853, 2050
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 7 cut(s) 742, 1454, 1560, 1574, 1812, 1815, 1932
FspBI CTAG 7 cut(s) 89, 635, 1113, 1146, 1467, 1982, 2129
FspI TGCGCA 1 cut(s) 1049
GlaI GCGC 2 cut(s) 1049, 2093
GluI GCNGC 7 cut(s) 742, 1454, 1560, 1574, 1812, 1815, 1932
GsaI CCCAGC 1 cut(s) 1995
GsuI CTGGAG 1 cut(s) 1323
HaeII RGCGCY 1 cut(s) 2095
HaeIII GGCC 5 cut(s) 1161, 1617, 1730, 1863, 1883
HapII CCGG 5 cut(s) 262, 408, 1905, 2107, 2323
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 1050, 2094
Hin6I GCGC 2 cut(s) 1048, 2092
HinP1I GCGC 2 cut(s) 1048, 2092
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 1202, 1349, 1475, 1909, 2144, 2326
HpaII CCGG 5 cut(s) 262, 408, 1905, 2107, 2323
HphI GGTGA 4 cut(s) 41, 1163, 1379, 1675
Hpy166II GTNNAC 2 cut(s) 133, 2076
Hpy8I GTNNAC 2 cut(s) 133, 2076
HpyAV CCTTC 8 cut(s) 121, 213, 516, 1007, 2210, 2231, 2330, 2344
HpyCH4III ACNGT 8 cut(s) 106, 390, 567, 982, 1179, 1219, 1944, 2196
HpyCH4IV ACGT 2 cut(s) 436, 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 166, 322, 1691, 1736, 1880, 1937, 2048, 2063
HpyF3I CTNAG 8 cut(s) 466, 542, 1317, 1471, 1913, 2154, 2268, 2312
HpySE526I ACGT 2 cut(s) 436, 899
HspAI GCGC 2 cut(s) 1048, 2092
Kpn2I TCCGGA 1 cut(s) 2322
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 5 cut(s) 769, 829, 1070, 1891, 2023
LguI GCTCTTC 1 cut(s) 2064
LmnI GCTCC 3 cut(s) 1748, 1907, 2240
Lsp1109I GCAGC 6 cut(s) 728, 1440, 1546, 1798, 1826, 1918
LweI GCATC 6 cut(s) 719, 726, 1130, 1288, 1424, 1918
MaeI CTAG 7 cut(s) 89, 635, 1113, 1146, 1467, 1982, 2129
MaeII ACGT 2 cut(s) 436, 899
MaeIII GTNAC 6 cut(s) 454, 695, 860, 998, 1687, 2124
MalI GATC 5 cut(s) 771, 831, 1072, 1893, 2025
MboI GATC 5 cut(s) 769, 829, 1070, 1891, 2023
MfeI CAATTG 3 cut(s) 1535, 1752, 2100
MflI RGATCY 3 cut(s) 769, 1070, 2023
MhlI GDGCHC 1 cut(s) 762
MlyI GAGTC 1 cut(s) 1903
MmeI TCCRAC 1 cut(s) 747
MroI TCCGGA 1 cut(s) 2322
MseI TTAA 8 cut(s) 305, 374, 413, 690, 1019, 1254, 1487, 1713
MslI CAYNNNNRTG 1 cut(s) 2036
MspA1I CMGCKG 4 cut(s) 741, 1453, 1811, 2254
MspI CCGG 5 cut(s) 262, 408, 1905, 2107, 2323
MspR9I CCNGG 8 cut(s) 16, 262, 263, 1326, 1365, 1906, 2107, 2108
MunI CAATTG 3 cut(s) 1535, 1752, 2100
MvaI CCWGG 3 cut(s) 16, 1326, 1365
MvnI CGCG 2 cut(s) 76, 678
MwoI GCNNNNNNNGC 8 cut(s) 166, 322, 1691, 1736, 1880, 1937, 2048, 2063
NciI CCSGG 5 cut(s) 262, 263, 1906, 2107, 2108
NdeII GATC 5 cut(s) 769, 829, 1070, 1891, 2023
NlaIV GGNNCC 3 cut(s) 771, 1795, 2025
NmuCI GTSAC 4 cut(s) 695, 860, 998, 1687
NruI TCGCGA 2 cut(s) 76, 678
NsbI TGCGCA 1 cut(s) 1049
NspI RCATGY 1 cut(s) 1685
PaeI GCATGC 1 cut(s) 1685
PagI TCATGA 1 cut(s) 1506
PasI CCCWGGG 1 cut(s) 1364
PceI AGGCCT 1 cut(s) 1883
PciSI GCTCTTC 1 cut(s) 2064
PfeI GAWTC 5 cut(s) 1202, 1349, 1475, 2144, 2326
PflMI CCANNNNNTGG 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 1904
PkrI GCNGC 7 cut(s) 743, 1455, 1561, 1575, 1813, 1816, 1933
PleI GAGTC 1 cut(s) 1903
PpsI GAGTC 1 cut(s) 1903
PshBI ATTAAT 1 cut(s) 1713
Psp124BI GAGCTC 1 cut(s) 762
Psp1406I AACGTT 1 cut(s) 436
Psp6I CCWGG 3 cut(s) 14, 1324, 1363
PspFI CCCAGC 1 cut(s) 1991
PspGI CCWGG 3 cut(s) 14, 1324, 1363
PspN4I GGNNCC 3 cut(s) 771, 1795, 2025
PstI CTGCAG 2 cut(s) 1564, 1816
PstNI CAGNNNCTG 1 cut(s) 1478
PsuI RGATCY 3 cut(s) 769, 1070, 2023
PvuII CAGCTG 2 cut(s) 1453, 1811
RruI TCGCGA 2 cut(s) 76, 678
RsaI GTAC 4 cut(s) 370, 1040, 1216, 2221
RsaNI GTAC 4 cut(s) 369, 1039, 1215, 2220
RseI CAYNNNNRTG 1 cut(s) 2036
SacI GAGCTC 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 2064
SaqAI TTAA 8 cut(s) 305, 374, 413, 690, 1019, 1254, 1487, 1713
SatI GCNGC 7 cut(s) 742, 1454, 1560, 1574, 1812, 1815, 1932
Sau3AI GATC 5 cut(s) 769, 829, 1070, 1891, 2023
ScaI AGTACT 2 cut(s) 1040, 1216
SchI GAGTC 1 cut(s) 1903
ScrFI CCNGG 8 cut(s) 16, 262, 263, 1326, 1365, 1906, 2107, 2108
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 6 cut(s) 719, 726, 1130, 1288, 1424, 1918
SfcI CTRYAG 4 cut(s) 585, 1560, 1812, 1935
SmaI CCCGGG 2 cut(s) 263, 2108
SmiMI CAYNNNNRTG 1 cut(s) 2036
SmlI CTYRAG 4 cut(s) 6, 356, 1210, 1526
SmoI CTYRAG 4 cut(s) 6, 356, 1210, 1526
SpeI ACTAGT 1 cut(s) 2128
SphI GCATGC 1 cut(s) 1685
SseBI AGGCCT 1 cut(s) 1883
SsiI CCGC 7 cut(s) 316, 708, 739, 1149, 1573, 2042, 2252
SspI AATATT 1 cut(s) 940
SspMI CTAG 7 cut(s) 89, 635, 1113, 1146, 1467, 1982, 2129
SstI GAGCTC 1 cut(s) 762
StuI AGGCCT 1 cut(s) 1883
StyD4I CCNGG 8 cut(s) 14, 260, 261, 1324, 1363, 1904, 2105, 2106
StyI CCWWGG 1 cut(s) 1884
TaaI ACNGT 8 cut(s) 106, 390, 567, 982, 1179, 1219, 1944, 2196
TaiI ACGT 2 cut(s) 439, 902
TaqI TCGA 2 cut(s) 293, 645
TatI WGTACW 4 cut(s) 368, 1038, 1214, 2219
TauI GCSGC 1 cut(s) 1576
TfiI GAWTC 5 cut(s) 1202, 1349, 1475, 2144, 2326
Tru1I TTAA 8 cut(s) 305, 374, 413, 690, 1019, 1254, 1487, 1713
Tru9I TTAA 8 cut(s) 305, 374, 413, 690, 1019, 1254, 1487, 1713
TscAI CASTG 7 cut(s) 111, 968, 985, 1231, 1625, 1947, 2038
TseFI GTSAC 4 cut(s) 695, 860, 998, 1687
TseI GCWGC 6 cut(s) 741, 1453, 1559, 1811, 1814, 1931
Tsp45I GTSAC 4 cut(s) 695, 860, 998, 1687
TspGWI ACGGA 2 cut(s) 2112, 2170
TspMI CCCGGG 2 cut(s) 261, 2106
TspRI CASTG 7 cut(s) 111, 968, 985, 1231, 1625, 1947, 2038
Van91I CCANNNNNTGG 1 cut(s) 655
VspI ATTAAT 1 cut(s) 1713
XapI RAATTY 8 cut(s) 266, 346, 680, 1702, 1804, 2068, 2118, 2170
XceI RCATGY 1 cut(s) 1685
XmaI CCCGGG 2 cut(s) 261, 2106
XspI CTAG 7 cut(s) 89, 635, 1113, 1146, 1467, 1982, 2129
ZrmI AGTACT 2 cut(s) 1040, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.