RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54790 AT3G54790 AT3G54790 |
| fragaria_vesca | FvH4_2g21330 FvH4_2g21330 FvH4_2g21330 FvH4_2g21330 |
| malus_domestica | MD05G1196000.v1.1 MD10G1183200.v1.1 |
| prunus_persica | Prupe.8G222400_v2.0.a1 Prupe.8G222400_v2.0.a1 Prupe.8G222400_v2.0.a1 Prupe.8G222400_v2.0.a1 Prupe.8G222400_v2.0.a1 |
| pyrus_communis | pycom05g18300 pycom10g15830 |
| rosa_chinensis | RchiOBHm_Chr6g0287911 |
| rosa_laevigata | RLG00000012456 |
| rosa_multiflora | Rmu_sc0000042.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00180670 Rroxscaffold_7G00180880 |
| rosa_rugosa | Rorug06G0193500 Rorug06G0193500 |
| rosa_samantha | Rh6AG302600 Rh6BG308800 Rh6CG300900 Rh6CG316500 Rh6DG301200 |
| rosa_wichuraiana | Rw6G026150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1072 |
| AccII | CGCG | 1 cut(s) | 2109 |
| AccIII | TCCGGA | 1 cut(s) | 2337 |
| AciI | CCGC | 5 cut(s) | 325, 732, 763, 1588, 1638 |
| AclWI | GGATC | 3 cut(s) | 861, 1498, 1766 |
| AcsI | RAATTY | 6 cut(s) | 222, 275, 450, 701, 1717, 1819 |
| AcuI | CTGAAG | 6 cut(s) | 185, 198, 416, 762, 795, 2231 |
| AfaI | GTAC | 3 cut(s) | 162, 1201, 2236 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 888, 2048, 2269 |
| AhlI | ACTAGT | 1 cut(s) | 2143 |
| AjnI | CCWGG | 2 cut(s) | 2238, 2268 |
| AleI | CACNNNNGTG | 1 cut(s) | 696 |
| Alw21I | GWGCWC | 1 cut(s) | 723 |
| Alw26I | GTCTC | 6 cut(s) | 297, 691, 900, 1017, 1126, 1240 |
| AlwI | GGATC | 3 cut(s) | 861, 1498, 1766 |
| Aor13HI | TCCGGA | 1 cut(s) | 2337 |
| AoxI | GGCC | 3 cut(s) | 1630, 1896, 2064 |
| ApoI | RAATTY | 6 cut(s) | 222, 275, 450, 701, 1717, 1819 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1696, 1728 |
| AseI | ATTAAT | 2 cut(s) | 1529, 1728 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1396 |
| AspLEI | GCGC | 2 cut(s) | 1255, 2109 |
| AspS9I | GGNCC | 2 cut(s) | 793, 2038 |
| AsuC2I | CCSGG | 1 cut(s) | 883 |
| AsuHPI | GGTGA | 3 cut(s) | 50, 341, 1176 |
| AvaII | GGWCC | 2 cut(s) | 793, 2038 |
| BanII | GRGCYC | 1 cut(s) | 864 |
| BbsI | GAAGAC | 5 cut(s) | 422, 564, 768, 1542, 1740 |
| Bbv12I | GWGCWC | 1 cut(s) | 723 |
| BccI | CCATC | 5 cut(s) | 37, 845, 1024, 1562, 2029 |
| BceAI | ACGGC | 3 cut(s) | 1003, 1360, 2051 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 434, 468 |
| BciT130I | CCWGG | 2 cut(s) | 2240, 2270 |
| BclI | TGATCA | 1 cut(s) | 69 |
| BcnI | CCSGG | 1 cut(s) | 883 |
| BcoDI | GTCTC | 6 cut(s) | 297, 691, 900, 1017, 1126, 1240 |
| BcuI | ACTAGT | 1 cut(s) | 2143 |
| BfaI | CTAG | 8 cut(s) | 98, 270, 656, 1128, 1482, 1913, 1997, 2144 |
| BfmI | CTRYAG | 5 cut(s) | 142, 395, 606, 1575, 1827 |
| BglII | AGATCT | 1 cut(s) | 830 |
| Bme1390I | CCNGG | 3 cut(s) | 883, 2240, 2270 |
| Bme18I | GGWCC | 2 cut(s) | 793, 2038 |
| BmgT120I | GGNCC | 2 cut(s) | 793, 2038 |
| BmiI | GGNNCC | 4 cut(s) | 795, 1810, 2040, 2167 |
| BmrFI | CCNGG | 3 cut(s) | 883, 2240, 2270 |
| BmsI | GCATC | 7 cut(s) | 62, 743, 750, 1145, 1345, 1671, 1933 |
| BpiI | GAAGAC | 5 cut(s) | 422, 564, 768, 1542, 1740 |
| BpmI | CTGGAG | 2 cut(s) | 1222, 1338 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1918 |
| BpuEI | CTTGAG | 2 cut(s) | 350, 1526 |
| BpuMI | CCSGG | 1 cut(s) | 883 |
| Bsa29I | ATCGAT | 1 cut(s) | 1770 |
| BsaBI | GATNNNNATC | 2 cut(s) | 118, 347 |
| BsaI | GGTCTC | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 3 cut(s) | 1899, 2238, 2268 |
| BsaWI | WCCGGW | 1 cut(s) | 2337 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 888, 2048, 2269 |
| Bse1I | ACTGG | 4 cut(s) | 293, 1239, 1340, 2053 |
| Bse3DI | GCAATG | 5 cut(s) | 179, 600, 1377, 1752, 2364 |
| Bse8I | GATNNNNATC | 2 cut(s) | 118, 347 |
| BseAI | TCCGGA | 1 cut(s) | 2337 |
| BseBI | CCWGG | 2 cut(s) | 2240, 2270 |
| BseCI | ATCGAT | 1 cut(s) | 1770 |
| BseDI | CCNNGG | 3 cut(s) | 1899, 2238, 2268 |
| BseGI | GGATG | 8 cut(s) | 734, 741, 837, 1076, 1160, 1336, 1511, 1861 |
| BseJI | GATNNNNATC | 2 cut(s) | 118, 347 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 888, 2048, 2269 |
| BseMI | GCAATG | 5 cut(s) | 179, 600, 1377, 1752, 2364 |
| BseMII | CTCAG | 5 cut(s) | 1017, 1323, 1932, 2297, 2341 |
| BseNI | ACTGG | 4 cut(s) | 293, 1239, 1340, 2053 |
| BseYI | CCCAGC | 1 cut(s) | 2006 |
| Bsh1236I | CGCG | 1 cut(s) | 2109 |
| BshFI | GGCC | 3 cut(s) | 1632, 1898, 2066 |
| BshVI | ATCGAT | 1 cut(s) | 1770 |
| BsiHKAI | GWGCWC | 1 cut(s) | 723 |
| BsiSI | CCGG | 3 cut(s) | 738, 883, 2338 |
| BslFI | GGGAC | 4 cut(s) | 992, 1441, 1936, 2246 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 888, 2048, 2269 |
| BsmAI | GTCTC | 6 cut(s) | 297, 691, 900, 1017, 1126, 1240 |
| BsmBI | CGTCTC | 1 cut(s) | 1017 |
| BsmFI | GGGAC | 4 cut(s) | 992, 1441, 1936, 2246 |
| BsmI | GAATGC | 2 cut(s) | 1262, 2133 |
| BsnI | GGCC | 3 cut(s) | 1632, 1898, 2066 |
| Bso31I | GGTCTC | 1 cut(s) | 297 |
| Bsp1286I | GDGCHC | 2 cut(s) | 723, 864 |
| Bsp13I | TCCGGA | 1 cut(s) | 2337 |
| Bsp143I | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| BspACI | CCGC | 5 cut(s) | 325, 732, 763, 1588, 1638 |
| BspANI | GGCC | 3 cut(s) | 1632, 1898, 2066 |
| BspCNI | CTCAG | 5 cut(s) | 1016, 1324, 1931, 2296, 2340 |
| BspDI | ATCGAT | 1 cut(s) | 1770 |
| BspEI | TCCGGA | 1 cut(s) | 2337 |
| BspFNI | CGCG | 1 cut(s) | 2109 |
| BspLI | GGNNCC | 4 cut(s) | 795, 1810, 2040, 2167 |
| BspMAI | CTGCAG | 3 cut(s) | 399, 1579, 1831 |
| BspPI | GGATC | 3 cut(s) | 861, 1498, 1766 |
| BspQI | GCTCTTC | 2 cut(s) | 364, 2079 |
| BspTNI | GGTCTC | 1 cut(s) | 297 |
| BsrDI | GCAATG | 5 cut(s) | 179, 600, 1377, 1752, 2364 |
| BsrI | ACTGG | 4 cut(s) | 293, 1239, 1340, 2053 |
| BssECI | CCNNGG | 3 cut(s) | 1899, 2238, 2268 |
| BssMI | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| BssT1I | CCWWGG | 1 cut(s) | 1899 |
| Bst2UI | CCWGG | 2 cut(s) | 2240, 2270 |
| Bst4CI | ACNGT | 3 cut(s) | 925, 1194, 2202 |
| Bst6I | CTCTTC | 4 cut(s) | 364, 486, 1575, 2079 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 442, 1751 |
| BstC8I | GCNNGC | 2 cut(s) | 1698, 1993 |
| BstDEI | CTNAG | 8 cut(s) | 487, 563, 1003, 1332, 1918, 1928, 2283, 2327 |
| BstF5I | GGATG | 8 cut(s) | 734, 741, 837, 1076, 1160, 1336, 1511, 1861 |
| BstFNI | CGCG | 1 cut(s) | 2109 |
| BstHHI | GCGC | 2 cut(s) | 1255, 2109 |
| BstKTI | GATC | 9 cut(s) | 72, 116, 661, 833, 856, 1024, 1493, 1774, 1909 |
| BstMAI | GTCTC | 6 cut(s) | 297, 691, 900, 1017, 1126, 1240 |
| BstMBI | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| BstNI | CCWGG | 2 cut(s) | 2240, 2270 |
| BstNSI | RCATGY | 1 cut(s) | 1700 |
| BstSCI | CCNGG | 3 cut(s) | 881, 2238, 2268 |
| BstSFI | CTRYAG | 5 cut(s) | 142, 395, 606, 1575, 1827 |
| BstUI | CGCG | 1 cut(s) | 2109 |
| BstV2I | GAAGAC | 5 cut(s) | 422, 564, 768, 1542, 1740 |
| BstX2I | RGATCY | 1 cut(s) | 830 |
| BstYI | RGATCY | 1 cut(s) | 830 |
| Bsu15I | ATCGAT | 1 cut(s) | 1770 |
| BsuRI | GGCC | 3 cut(s) | 1632, 1898, 2066 |
| BsuTUI | ATCGAT | 1 cut(s) | 1770 |
| BtsCI | GGATG | 8 cut(s) | 734, 741, 837, 1076, 1160, 1336, 1511, 1861 |
| BtsI | GCAGTG | 1 cut(s) | 1661 |
| BtsIMutI | CAGTG | 1 cut(s) | 1661 |
| Cac8I | GCNNGC | 2 cut(s) | 1698, 1993 |
| CfoI | GCGC | 2 cut(s) | 1255, 2109 |
| Cfr13I | GGNCC | 2 cut(s) | 793, 2038 |
| ClaI | ATCGAT | 1 cut(s) | 1770 |
| Csp6I | GTAC | 3 cut(s) | 161, 1200, 2235 |
| CviQI | GTAC | 3 cut(s) | 161, 1200, 2235 |
| DdeI | CTNAG | 8 cut(s) | 487, 563, 1003, 1332, 1918, 1928, 2283, 2327 |
| DpnI | GATC | 9 cut(s) | 71, 115, 660, 832, 855, 1023, 1492, 1773, 1908 |
| DpnII | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1072 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1072 |
| Eam1104I | CTCTTC | 4 cut(s) | 364, 486, 1575, 2079 |
| EarI | CTCTTC | 4 cut(s) | 364, 486, 1575, 2079 |
| Eco130I | CCWWGG | 1 cut(s) | 1899 |
| Eco147I | AGGCCT | 1 cut(s) | 1898 |
| Eco24I | GRGCYC | 1 cut(s) | 864 |
| Eco31I | GGTCTC | 1 cut(s) | 297 |
| Eco32I | GATATC | 1 cut(s) | 1284 |
| Eco47I | GGWCC | 2 cut(s) | 793, 2038 |
| Eco57I | CTGAAG | 6 cut(s) | 185, 198, 416, 762, 795, 2231 |
| EcoRI | GAATTC | 2 cut(s) | 275, 701 |
| EcoRII | CCWGG | 2 cut(s) | 2238, 2268 |
| EcoRV | GATATC | 1 cut(s) | 1284 |
| EcoT14I | CCWWGG | 1 cut(s) | 1899 |
| EcoT38I | GRGCYC | 1 cut(s) | 864 |
| ErhI | CCWWGG | 1 cut(s) | 1899 |
| Esp3I | CGTCTC | 1 cut(s) | 1017 |
| FaqI | GGGAC | 4 cut(s) | 992, 1441, 1936, 2246 |
| FauI | CCCGC | 1 cut(s) | 318 |
| FbaI | TGATCA | 1 cut(s) | 69 |
| FokI | GGATG | 8 cut(s) | 721, 728, 824, 1063, 1167, 1323, 1498, 1868 |
| FriOI | GRGCYC | 1 cut(s) | 864 |
| FspBI | CTAG | 8 cut(s) | 98, 270, 656, 1128, 1482, 1913, 1997, 2144 |
| GlaI | GCGC | 2 cut(s) | 1254, 2108 |
| GsaI | CCCAGC | 1 cut(s) | 2010 |
| GsuI | CTGGAG | 2 cut(s) | 1222, 1338 |
| HaeIII | GGCC | 3 cut(s) | 1632, 1898, 2066 |
| HapII | CCGG | 3 cut(s) | 738, 883, 2338 |
| HhaI | GCGC | 2 cut(s) | 1255, 2109 |
| Hin6I | GCGC | 2 cut(s) | 1253, 2107 |
| HinP1I | GCGC | 2 cut(s) | 1253, 2107 |
| HincII | GTYRAC | 3 cut(s) | 199, 1503, 2059 |
| HindII | GTYRAC | 3 cut(s) | 199, 1503, 2059 |
| HindIII | AAGCTT | 1 cut(s) | 167 |
| HinfI | GANTC | 5 cut(s) | 4, 1217, 1364, 1924, 2341 |
| HpaII | CCGG | 3 cut(s) | 738, 883, 2338 |
| HphI | GGTGA | 3 cut(s) | 50, 341, 1176 |
| Hpy166II | GTNNAC | 4 cut(s) | 199, 1503, 2059, 2091 |
| Hpy8I | GTNNAC | 4 cut(s) | 199, 1503, 2059, 2091 |
| HpyCH4III | ACNGT | 3 cut(s) | 925, 1194, 2202 |
| HpyF3I | CTNAG | 8 cut(s) | 487, 563, 1003, 1332, 1918, 1928, 2283, 2327 |
| HspAI | GCGC | 2 cut(s) | 1253, 2107 |
| Kpn2I | TCCGGA | 1 cut(s) | 2337 |
| Ksp22I | TGATCA | 1 cut(s) | 69 |
| Kzo9I | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| LguI | GCTCTTC | 2 cut(s) | 364, 2079 |
| LmnI | GCTCC | 4 cut(s) | 266, 1212, 1808, 2255 |
| LweI | GCATC | 7 cut(s) | 62, 743, 750, 1145, 1345, 1671, 1933 |
| MaeI | CTAG | 8 cut(s) | 98, 270, 656, 1128, 1482, 1913, 1997, 2144 |
| MaeIII | GTNAC | 4 cut(s) | 475, 1519, 1702, 2139 |
| MalI | GATC | 9 cut(s) | 71, 115, 660, 832, 855, 1023, 1492, 1773, 1908 |
| MboI | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| MfeI | CAATTG | 2 cut(s) | 2115, 2207 |
| MflI | RGATCY | 1 cut(s) | 830 |
| MhlI | GDGCHC | 2 cut(s) | 723, 864 |
| MlyI | GAGTC | 1 cut(s) | 1918 |
| MmeI | TCCRAC | 3 cut(s) | 771, 998, 1069 |
| MroI | TCCGGA | 1 cut(s) | 2337 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1396 |
| MseI | TTAA | 9 cut(s) | 314, 383, 422, 1133, 1269, 1529, 1728, 1893, 1962 |
| MslI | CAYNNNNRTG | 4 cut(s) | 696, 1271, 1299, 1559 |
| MspA1I | CMGCKG | 1 cut(s) | 765 |
| MspI | CCGG | 3 cut(s) | 738, 883, 2338 |
| MspR9I | CCNGG | 3 cut(s) | 883, 2240, 2270 |
| MunI | CAATTG | 2 cut(s) | 2115, 2207 |
| Mva1269I | GAATGC | 2 cut(s) | 1262, 2133 |
| MvaI | CCWGG | 2 cut(s) | 2240, 2270 |
| MvnI | CGCG | 1 cut(s) | 2109 |
| NciI | CCSGG | 1 cut(s) | 883 |
| NdeII | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| NlaIV | GGNNCC | 4 cut(s) | 795, 1810, 2040, 2167 |
| NmuCI | GTSAC | 2 cut(s) | 1519, 1702 |
| NspI | RCATGY | 1 cut(s) | 1700 |
| OliI | CACNNNNGTG | 1 cut(s) | 696 |
| PaeI | GCATGC | 1 cut(s) | 1700 |
| PceI | AGGCCT | 1 cut(s) | 1898 |
| PciSI | GCTCTTC | 2 cut(s) | 364, 2079 |
| PctI | GAATGC | 2 cut(s) | 1262, 2133 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1396 |
| PfeI | GAWTC | 3 cut(s) | 1217, 1364, 2341 |
| PleI | GAGTC | 1 cut(s) | 1918 |
| PpsI | GAGTC | 1 cut(s) | 1918 |
| PshBI | ATTAAT | 2 cut(s) | 1529, 1728 |
| Psp6I | CCWGG | 2 cut(s) | 2238, 2268 |
| PspFI | CCCAGC | 1 cut(s) | 2006 |
| PspGI | CCWGG | 2 cut(s) | 2238, 2268 |
| PspN4I | GGNNCC | 4 cut(s) | 795, 1810, 2040, 2167 |
| PspPI | GGNCC | 2 cut(s) | 793, 2038 |
| PstI | CTGCAG | 3 cut(s) | 399, 1579, 1831 |
| PsuI | RGATCY | 1 cut(s) | 830 |
| RsaI | GTAC | 3 cut(s) | 162, 1201, 2236 |
| RsaNI | GTAC | 3 cut(s) | 161, 1200, 2235 |
| RseI | CAYNNNNRTG | 4 cut(s) | 696, 1271, 1299, 1559 |
| SapI | GCTCTTC | 2 cut(s) | 364, 2079 |
| SaqAI | TTAA | 9 cut(s) | 314, 383, 422, 1133, 1269, 1529, 1728, 1893, 1962 |
| Sau3AI | GATC | 9 cut(s) | 69, 113, 658, 830, 853, 1021, 1490, 1771, 1906 |
| Sau96I | GGNCC | 2 cut(s) | 793, 2038 |
| SchI | GAGTC | 1 cut(s) | 1918 |
| ScrFI | CCNGG | 3 cut(s) | 883, 2240, 2270 |
| SduI | GDGCHC | 2 cut(s) | 723, 864 |
| SfaNI | GCATC | 7 cut(s) | 62, 743, 750, 1145, 1345, 1671, 1933 |
| SfcI | CTRYAG | 5 cut(s) | 142, 395, 606, 1575, 1827 |
| SinI | GGWCC | 2 cut(s) | 793, 2038 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 696, 1271, 1299, 1559 |
| SmlI | CTYRAG | 2 cut(s) | 365, 1541 |
| SmoI | CTYRAG | 2 cut(s) | 365, 1541 |
| SpeI | ACTAGT | 1 cut(s) | 2143 |
| SphI | GCATGC | 1 cut(s) | 1700 |
| SseBI | AGGCCT | 1 cut(s) | 1898 |
| SsiI | CCGC | 5 cut(s) | 325, 732, 763, 1588, 1638 |
| SspMI | CTAG | 8 cut(s) | 98, 270, 656, 1128, 1482, 1913, 1997, 2144 |
| StuI | AGGCCT | 1 cut(s) | 1898 |
| StyD4I | CCNGG | 3 cut(s) | 881, 2238, 2268 |
| StyI | CCWWGG | 1 cut(s) | 1899 |
| TaaI | ACNGT | 3 cut(s) | 925, 1194, 2202 |
| TaqI | TCGA | 8 cut(s) | 85, 454, 630, 1024, 1064, 1557, 1618, 1770 |
| TatI | WGTACW | 2 cut(s) | 160, 1199 |
| TauI | GCSGC | 1 cut(s) | 1591 |
| TfiI | GAWTC | 3 cut(s) | 1217, 1364, 2341 |
| Tru1I | TTAA | 9 cut(s) | 314, 383, 422, 1133, 1269, 1529, 1728, 1893, 1962 |
| Tru9I | TTAA | 9 cut(s) | 314, 383, 422, 1133, 1269, 1529, 1728, 1893, 1962 |
| TscAI | CASTG | 1 cut(s) | 1668 |
| TseFI | GTSAC | 2 cut(s) | 1519, 1702 |
| Tsp45I | GTSAC | 2 cut(s) | 1519, 1702 |
| TspGWI | ACGGA | 2 cut(s) | 1821, 2127 |
| TspRI | CASTG | 1 cut(s) | 1668 |
| VpaK11BI | GGWCC | 2 cut(s) | 793, 2038 |
| VspI | ATTAAT | 2 cut(s) | 1529, 1728 |
| XapI | RAATTY | 6 cut(s) | 222, 275, 450, 701, 1717, 1819 |
| XceI | RCATGY | 1 cut(s) | 1700 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1396 |
| XspI | CTAG | 8 cut(s) | 98, 270, 656, 1128, 1482, 1913, 1997, 2144 |