Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016263

Physical Location & Seq

Genomic Coordinates Forward (+)

18753316 .. 18755442

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAACATGAAGCTGAAAGTAGGCAATTCAGTGGAAGTGTTGAGAAAAGAAAATAATCTGTGCATGTCCTGGTTTTCGGGTAAAGTAATCGCAGTTGATGGCGATGACTTCATTGTGAGGTACAAGTCACTTATGGACTGCAAAGGGGTGATGGCGGTGGAGAGGGTGTGCAGAAAGGACATTAGGCCTAAGCCTCTACATGCAAAGAAAAGAGTGGGGTGGATTGTTGGTGATATGGTTGAAGTGTTTGACACAAAGTGTTGGAAGGTTGGGAAGGTAACCAAGGTAGCAAAGAACAATCGAGTTGTCATTAGATTCCTCGAGTCCATTCAGCTTAAGGAATTTGATGAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAACAAGTGGTCAGTGACTGAGAAGGTTCACAAGAAAAACCAGATTAAGATTCGGAGCAGTAATAGATGGAATGACTTGAAGGTTCAACTAGAGGCAAGTTCTAAGGAGCGTTGCTCAAAAGAGAGGAAAATCAGCTGCAAGAGATCAAACATCTATGAGGGAGCATCTGACAGGCCATCAATGGCTAACCATATGTTGTACATGCAGGTAGATAAAACATCAACGAACAACTCTAGTACTGAGATGGATCCAAAAATGAGAAACATAACGAGCTCTGGCATGCATAGATCTTTCGAGTTGACTCAGTGCACTGAGGATAGTTACCAATGTTCAGTGGCTAGTTGTAGTTTGAACGAGCTTTCCGACTCTCAAAATGAGTGTTCTGCAGAACTTGGAGAAGATGTTGGTGATAGTTCTGACGCAGAGTCATCATTTCCAGCTTTGACTAGGAAAAAATTTTCAGCACCATTACCCGAGCCTGATCATATGCTTGATGTGGACATTCACAAGTTAGAGCTTCAAGCATACAAGTCGACTCTGCAGGTGCTCTATGCTTCAGGTCCCTTGAGTTGGGAGCAGGAATCCCTCCTAACGAATCTTCGGCTGTCCCTTCACATAACAAATGAGGAACATTTACTGCATTTGAGGCACCTCTTATCTTCTCAGGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

353

Amino Acids

40.32

Weight (kDa)

8.65

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	8 - 65	8.4e-13	Agenet domain
ENT	PF03735	295 - 341	2.3e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22820
rosa_chinensis	RchiOBHm_Chr6g0289741
rosa_laevigata	RLG00000012270
rosa_multiflora	Rmu_sc0005640.1_g000017
rosa_roxburghii	Rroxscaffold_7G00177600 Rroxscaffold_7G00178100
rosa_rugosa	Rorug06G0206100 Rorug06G0206200 Rorug06G0206300 Rorug06G0206300
rosa_samantha	Rh6AG318100 Rh6BG325400 Rh6CG331000 Rh6DG316700
rosa_wichuraiana	Rw6G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	916
Acc36I	ACCTGC	2 cut(s)	580, 916
AccB1I	GGYRCC	1 cut(s)	1032
AccI	GTMKAC	1 cut(s)	917
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	4 cut(s)	371, 387, 626, 639
AcsI	RAATTY	2 cut(s)	341, 839
AcuI	CTGAAG	1 cut(s)	924
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	122, 584, 622
AfiI	CCNNNNNNNGG	1 cut(s)	954
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	5 cut(s)	242, 463, 470, 736, 905
AhdI	GACNNNNNGTC	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	8 cut(s)	13, 334, 374, 519, 657, 742, 824, 901
AluI	AGCT	8 cut(s)	13, 334, 374, 519, 657, 742, 824, 901
Alw21I	GWGCWC	3 cut(s)	659, 695, 933
Alw44I	GTGCAC	1 cut(s)	691
AlwI	GGATC	4 cut(s)	371, 387, 626, 639
AlwNI	CAGNNNCTG	2 cut(s)	401, 1054
Ama87I	CYCGRG	2 cut(s)	320, 857
AoxI	GGCC	2 cut(s)	185, 557
ApaLI	GTGCAC	1 cut(s)	691
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	2 cut(s)	341, 839
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	3 cut(s)	160, 242, 803
AvaI	CYCGRG	2 cut(s)	320, 857
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	695
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	1032
BanII	GRGCYC	1 cut(s)	659
Bbv12I	GWGCWC	3 cut(s)	659, 695, 933
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	5 cut(s)	92, 145, 444, 568, 622
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	1 cut(s)	70
BclI	TGATCA	1 cut(s)	865
BfaI	CTAG	4 cut(s)	473, 618, 723, 831
BfmI	CTRYAG	2 cut(s)	768, 923
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	2 cut(s)	580, 916
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
BmcAI	AGTACT	1 cut(s)	622
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	944
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmeT110I	CYCGRG	2 cut(s)	320, 857
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	3 cut(s)	633, 946, 1034
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	970
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 771, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	954
Bse21I	CCTNAGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	954
BseMII	CTCAG	5 cut(s)	350, 393, 615, 687, 701
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	187, 559
BshNI	GGYRCC	1 cut(s)	1032
BsiHKAI	GWGCWC	3 cut(s)	659, 695, 933
BsiHKCI	CYCGRG	2 cut(s)	320, 857
BslFI	GGGAC	2 cut(s)	930, 976
BslI	CCNNNNNNNGG	1 cut(s)	954
BsmFI	GGGAC	2 cut(s)	930, 976
BsnI	GGCC	2 cut(s)	187, 559
BsoBI	CYCGRG	2 cut(s)	320, 857
Bsp1286I	GDGCHC	3 cut(s)	659, 695, 933
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	187, 559
BspCNI	CTCAG	5 cut(s)	351, 394, 616, 688, 700
BspLI	GGNNCC	3 cut(s)	633, 946, 1034
BspMAI	CTGCAG	2 cut(s)	772, 927
BspMI	ACCTGC	2 cut(s)	580, 916
BspPI	GGATC	4 cut(s)	371, 387, 626, 639
BspT107I	GGYRCC	1 cut(s)	1032
BspTI	CTTAAG	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	582
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	372, 665
BstDEI	CTNAG	8 cut(s)	189, 359, 402, 486, 624, 687, 696, 1047
BstEII	GGTNACC	1 cut(s)	277
BstKTI	GATC	6 cut(s)	366, 382, 530, 634, 674, 868
BstMBI	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	1030
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	4 cut(s)	67, 203, 589, 667
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	768, 923
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	2 cut(s)	631, 671
BstYI	RGATCY	2 cut(s)	631, 671
Bsu36I	CCTNAGG	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	187, 559
BtgZI	GCGATG	1 cut(s)	117
BtsIMutI	CAGTG	5 cut(s)	36, 402, 693, 695, 723
BveI	ACCTGC	2 cut(s)	580, 916
Cac8I	GCNNGC	2 cut(s)	372, 665
CaiI	CAGNNNCTG	2 cut(s)	401, 1054
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	3 cut(s)	121, 583, 621
CviAII	CATG	5 cut(s)	7, 64, 200, 586, 664
CviQI	GTAC	3 cut(s)	121, 583, 621
DdeI	CTNAG	8 cut(s)	189, 359, 402, 486, 624, 687, 696, 1047
DpnI	GATC	6 cut(s)	365, 381, 529, 633, 673, 867
DpnII	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
DraIII	CACNNNGTG	1 cut(s)	258
DriI	GACNNNNNGTC	1 cut(s)	808
Eam1105I	GACNNNNNGTC	1 cut(s)	808
Ecl136II	GAGCTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	944
Eco53kI	GAGCTC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	359
Eco88I	CYCGRG	2 cut(s)	320, 857
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	10, 67, 203, 589, 667
FaqI	GGGAC	2 cut(s)	930, 976
FatI	CATG	5 cut(s)	6, 63, 199, 585, 663
FauNDI	CATATG	2 cut(s)	576, 870
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	917
Fnu4HI	GCNGC	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	4 cut(s)	473, 618, 723, 831
GluI	GCNGC	1 cut(s)	520
HaeIII	GGCC	2 cut(s)	187, 559
HgaI	GACGC	1 cut(s)	812
Hin1II	CATG	5 cut(s)	10, 67, 203, 589, 667
HincII	GTYRAC	2 cut(s)	684, 918
HindII	GTYRAC	2 cut(s)	684, 918
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	9 cut(s)	315, 323, 433, 685, 749, 809, 919, 965, 979
HphI	GGTGA	3 cut(s)	160, 242, 803
Hpy166II	GTNNAC	5 cut(s)	412, 684, 693, 883, 918
Hpy188I	TCNGA	5 cut(s)	384, 438, 553, 748, 802
Hpy8I	GTNNAC	5 cut(s)	412, 684, 693, 883, 918
HpyAV	CCTTC	5 cut(s)	259, 268, 400, 457, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1030
HpyF3I	CTNAG	8 cut(s)	189, 359, 402, 486, 624, 687, 696, 1047
Hsp92II	CATG	5 cut(s)	10, 67, 203, 589, 667
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
LmnI	GCTCC	4 cut(s)	438, 490, 545, 958
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	4 cut(s)	473, 618, 723, 831
MaeIII	GTNAC	5 cut(s)	126, 277, 353, 397, 704
MalI	GATC	6 cut(s)	365, 381, 529, 633, 673, 867
MboI	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
MboII	GAAGA	3 cut(s)	794, 974, 1035
MflI	RGATCY	2 cut(s)	631, 671
MhlI	GDGCHC	3 cut(s)	659, 695, 933
MluCI	AATT	3 cut(s)	25, 341, 839
MlyI	GAGTC	5 cut(s)	332, 679, 743, 818, 913
MmeI	TCCRAC	2 cut(s)	242, 771
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	2 cut(s)	336, 429
MspA1I	CMGCKG	1 cut(s)	519
MspCI	CTTAAG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	1030
NdeI	CATATG	2 cut(s)	576, 870
NdeII	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
NlaIII	CATG	5 cut(s)	10, 67, 203, 589, 667
NlaIV	GGNNCC	3 cut(s)	633, 946, 1034
NmuCI	GTSAC	2 cut(s)	126, 397
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	4 cut(s)	67, 203, 589, 667
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PfeI	GAWTC	4 cut(s)	315, 433, 965, 979
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	5 cut(s)	331, 679, 743, 817, 913
PpsI	GAGTC	5 cut(s)	331, 679, 743, 817, 913
PpuMI	RGGWCCY	1 cut(s)	944
Psp124BI	GAGCTC	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	633, 946, 1034
PspPI	GGNCC	1 cut(s)	944
PspPPI	RGGWCCY	1 cut(s)	944
PspXI	VCTCGAGB	1 cut(s)	320
PstI	CTGCAG	2 cut(s)	772, 927
PstNI	CAGNNNCTG	2 cut(s)	401, 1054
PsuI	RGATCY	2 cut(s)	631, 671
PvuII	CAGCTG	1 cut(s)	519
RsaI	GTAC	3 cut(s)	122, 584, 622
RsaNI	GTAC	3 cut(s)	121, 583, 621
SacI	GAGCTC	1 cut(s)	659
SalI	GTCGAC	1 cut(s)	916
SaqAI	TTAA	2 cut(s)	336, 429
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	6 cut(s)	363, 379, 527, 631, 671, 865
Sau96I	GGNCC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	5 cut(s)	332, 679, 743, 818, 913
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	659, 695, 933
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	768, 923
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	944
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	3 cut(s)	320, 335, 949
SmoI	CTYRAG	3 cut(s)	320, 335, 949
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	3 cut(s)	25, 341, 839
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	4 cut(s)	473, 618, 723, 831
SstI	GAGCTC	1 cut(s)	659
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	282
TaqI	TCGA	4 cut(s)	301, 321, 678, 917
TasI	AATT	3 cut(s)	25, 341, 839
TatI	WGTACW	2 cut(s)	582, 620
TfiI	GAWTC	4 cut(s)	315, 433, 965, 979
Tru1I	TTAA	2 cut(s)	336, 429
Tru9I	TTAA	2 cut(s)	336, 429
TscAI	CASTG	5 cut(s)	36, 402, 695, 700, 723
TseFI	GTSAC	2 cut(s)	126, 397
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	2 cut(s)	126, 397
TspDTI	ATGAA	4 cut(s)	17, 23, 100, 363
TspRI	CASTG	5 cut(s)	36, 402, 695, 700, 723
Vha464I	CTTAAG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	341, 839
XceI	RCATGY	4 cut(s)	67, 203, 589, 667
XhoI	CTCGAG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	917
XspI	CTAG	4 cut(s)	473, 618, 723, 831
ZrmI	AGTACT	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.