Rmu_sc0005640.1_g000017

ENT

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005640.1
Physical Location & Seq
Reverse (-)
74247 .. 77636
3390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005640.1_g000017.1.cds

Sequence Viewer

Length: 1287 bp
atggagaaagagcgggtgattggaattctcccatggttctgcggtcctggaagtgttcgaacccttgtcttgtttgatgatcgagcgttcttcgtcaccggccatgggattttcaaaactaacccaaatcaccaatcaaatcccatcccaggaattggatttcaatggaagaaagcaccattctgcataattaaacaagtcccaggtccaagcttgaaaggtccgaaaagcatgaagctgaaagtaggcaattcagtggaggtgttgagaaaagaaaatgatctgtgtatgtcctggttttcaggtaaactaatggcagttgatggcgatgatttcattgtgaggtataagtcacttatagacagcaaagaggtgatggcggtggagagggtgtacagaaaggccattaggcctcggcctccacatgcaaagaaagagaagggatggattgttggtgatatggttgaagtgtttgatacgaagtgttggaaggttgggaaggtagccaaggtagggaagaacaatcgagttgtcattagatttctcgggtccattcagcttaaggaatttgatgaatgtaacctgaggatcaggcaagcttgggatcagaataagtggtcagtgattgagaaggttcaaaagaataatcagattaagattcggagccatagatgggatcattcaaaagttcaactagaggcaagttgtgcagaacctttctcaaaagagaagagaattagctgcaagagaagaagaagatcaaacattaatgtgggagcatgtgacaggccatcaatgagtaaccattggctgtacatgcaggtagataaaacatcaaggaacaactctagtactgatatagatcccaaaatgagaaaggcaaccagctatgggatgcatagatcttttgagtctactcagtgcactgaggatagttaccagtgttctgtggctagttgtagtatgaatgagctttccggctctcaaaatgggagttctgcagaacttggagaagatatttgtgatagttctgacgcagagtcatcatttccatcttcggctgggaaaaaactctcagctccattaccagagccttatgtgctcgatgttgacatccacaaattagagcttcacgcatacaagtcgactttgcacgtgctctatgcttcaggtcccttgagttgggagcaggaatccctcctaacgaatcttcgtctgtcccttaatataacaaatgaggaacatttgctgcatgtgaggcacctcttatcttctcaggttctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

48.59

Weight (kDa)

9.27

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 811
AccB1I GGYRCC 1 cut(s) 1260
AccB7I CCANNNNNTGG 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 13
AccI GTMKAC 2 cut(s) 914, 1145
AciI CCGC 3 cut(s) 13, 42, 380
AclWI GGATC 4 cut(s) 596, 612, 684, 857
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 2 cut(s) 24, 566
AcuI CTGAAG 1 cut(s) 1152
AcvI CACGTG 1 cut(s) 1156
AfaI GTAC 3 cut(s) 395, 815, 853
AfiI CCNNNNNNNGG 7 cut(s) 105, 149, 155, 513, 673, 891, 1182
AflII CTTAAG 1 cut(s) 560
AgsI TTSAA 7 cut(s) 115, 164, 217, 467, 638, 684, 692
AhdI GACNNNNNGTC 1 cut(s) 1039
AjnI CCWGG 4 cut(s) 46, 148, 202, 293
AluBI AGCT 9 cut(s) 213, 238, 559, 599, 741, 888, 973, 1079, 1129
AluI AGCT 9 cut(s) 213, 238, 559, 599, 741, 888, 973, 1079, 1129
Alw21I GWGCWC 3 cut(s) 926, 1104, 1161
Alw44I GTGCAC 1 cut(s) 922
AlwI GGATC 4 cut(s) 596, 612, 684, 857
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 5 cut(s) 100, 402, 410, 416, 788
ApaLI GTGCAC 1 cut(s) 922
ApeKI GCWGC 2 cut(s) 741, 1249
ApoI RAATTY 2 cut(s) 24, 566
AseI ATTAAT 1 cut(s) 768
AspS9I GGNCC 5 cut(s) 44, 206, 221, 549, 1172
AsuHPI GGTGA 5 cut(s) 28, 88, 122, 385, 467
AsuII TTCGAA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 5 cut(s) 44, 206, 221, 549, 1172
AxyI CCTNAGG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 926
BanI GGYRCC 1 cut(s) 1260
BbrPI CACGTG 1 cut(s) 1156
Bbv12I GWGCWC 3 cut(s) 926, 1104, 1161
BbvI GCAGC 2 cut(s) 728, 1236
BccI CCATC 7 cut(s) 152, 317, 370, 438, 666, 799, 1060
BcgI CGANNNNNNTGC 2 cut(s) 1125, 1159
BciT130I CCWGG 4 cut(s) 48, 150, 204, 295
BfaI CTAG 3 cut(s) 695, 849, 954
BfmI CTRYAG 1 cut(s) 999
BfrI CTTAAG 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 811
BglII AGATCT 1 cut(s) 902
BisI GCNGC 2 cut(s) 742, 1250
BlsI GCNGC 2 cut(s) 743, 1251
BmcAI AGTACT 1 cut(s) 853
Bme1390I CCNGG 4 cut(s) 48, 150, 204, 295
Bme18I GGWCC 5 cut(s) 44, 206, 221, 549, 1172
BmeRI GACNNNNNGTC 1 cut(s) 1039
BmeT110I CYCGRG 1 cut(s) 545
BmgT120I GGNCC 5 cut(s) 44, 206, 221, 549, 1172
BmiI GGNNCC 4 cut(s) 550, 665, 1174, 1262
BmrFI CCNGG 4 cut(s) 48, 150, 204, 295
BmsI GCATC 1 cut(s) 885
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 1198
BsaAI YACGTR 1 cut(s) 1156
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 6 cut(s) 32, 103, 148, 202, 413, 507
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 7 cut(s) 105, 149, 155, 513, 673, 891, 1182
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 940
Bse21I CCTNAGG 1 cut(s) 584
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 4 cut(s) 48, 150, 204, 295
BseDI CCNNGG 6 cut(s) 32, 103, 148, 202, 413, 507
BseGI GGATG 4 cut(s) 144, 449, 900, 1113
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 7 cut(s) 105, 149, 155, 513, 673, 891, 1182
BseMII CTCAG 4 cut(s) 575, 918, 932, 1089
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 1 cut(s) 926
BseXI GCAGC 2 cut(s) 728, 1236
BseYI CCCAGC 1 cut(s) 1061
BsgI GTGCAG 1 cut(s) 729
BshFI GGCC 5 cut(s) 102, 404, 412, 418, 790
BshNI GGYRCC 1 cut(s) 1260
BsiHKAI GWGCWC 3 cut(s) 926, 1104, 1161
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 2 cut(s) 99, 978
BslFI GGGAC 3 cut(s) 185, 1158, 1204
BslI CCNNNNNNNGG 7 cut(s) 105, 149, 155, 513, 673, 891, 1182
BsmFI GGGAC 3 cut(s) 185, 1158, 1204
BsnI GGCC 5 cut(s) 102, 404, 412, 418, 790
BsoBI CYCGRG 1 cut(s) 545
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 3 cut(s) 926, 1104, 1161
Bsp1407I TGTACA 2 cut(s) 393, 813
Bsp143I GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
Bsp19I CCATGG 2 cut(s) 32, 103
BspACI CCGC 3 cut(s) 13, 42, 380
BspANI GGCC 5 cut(s) 102, 404, 412, 418, 790
BspCNI CTCAG 4 cut(s) 576, 919, 931, 1088
BspLI GGNNCC 4 cut(s) 550, 665, 1174, 1262
BspMAI CTGCAG 1 cut(s) 1003
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 4 cut(s) 596, 612, 684, 857
BspT104I TTCGAA 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 1260
BspTI CTTAAG 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 2 cut(s) 393, 813
BsrI ACTGG 1 cut(s) 940
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 6 cut(s) 32, 103, 148, 202, 413, 507
BssMI GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
BssT1I CCWWGG 3 cut(s) 32, 103, 507
Bst2UI CCWGG 4 cut(s) 48, 150, 204, 295
Bst6I CTCTTC 1 cut(s) 725
BstAFI CTTAAG 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 707
BstAUI TGTACA 2 cut(s) 393, 813
BstBAI YACGTR 1 cut(s) 1156
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 5 cut(s) 584, 918, 927, 1075, 1275
BstDSI CCRYGG 2 cut(s) 32, 103
BstF5I GGATG 4 cut(s) 144, 449, 900, 1113
BstKTI GATC 8 cut(s) 82, 283, 591, 607, 679, 761, 865, 905
BstMBI GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
BstMWI GCNNNNNNNGC 4 cut(s) 707, 817, 1099, 1258
BstNI CCWGG 4 cut(s) 48, 150, 204, 295
BstNSI RCATGY 4 cut(s) 428, 783, 820, 1256
BstSCI CCNGG 4 cut(s) 46, 148, 202, 293
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 926
BstV1I GCAGC 2 cut(s) 728, 1236
BstX2I RGATCY 2 cut(s) 862, 902
BstYI RGATCY 2 cut(s) 862, 902
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 5 cut(s) 102, 404, 412, 418, 790
BtgI CCRYGG 2 cut(s) 32, 103
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 4 cut(s) 144, 449, 900, 1113
BtsIMutI CAGTG 5 cut(s) 261, 627, 924, 926, 947
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 5 cut(s) 44, 206, 221, 549, 1172
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 394, 814, 852
CviAII CATG 7 cut(s) 33, 104, 232, 425, 780, 817, 1253
CviQI GTAC 3 cut(s) 394, 814, 852
DdeI CTNAG 5 cut(s) 584, 918, 927, 1075, 1275
DpnI GATC 8 cut(s) 81, 282, 590, 606, 678, 760, 864, 904
DpnII GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
DriI GACNNNNNGTC 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 725
Eam1105I GACNNNNNGTC 1 cut(s) 1039
EarI CTCTTC 1 cut(s) 725
Eco130I CCWWGG 3 cut(s) 32, 103, 507
Eco147I AGGCCT 1 cut(s) 412
Eco47I GGWCC 5 cut(s) 44, 206, 221, 549, 1172
Eco57I CTGAAG 1 cut(s) 1152
Eco72I CACGTG 1 cut(s) 1156
Eco81I CCTNAGG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 46, 148, 202, 293
EcoT14I CCWWGG 3 cut(s) 32, 103, 507
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 32, 103, 507
FaeI CATG 7 cut(s) 36, 107, 235, 428, 783, 820, 1256
FaqI GGGAC 3 cut(s) 185, 1158, 1204
FatI CATG 7 cut(s) 32, 103, 231, 424, 779, 816, 1252
FauI CCCGC 1 cut(s) 6
FblI GTMKAC 2 cut(s) 914, 1145
Fnu4HI GCNGC 2 cut(s) 742, 1250
FokI GGATG 4 cut(s) 131, 456, 907, 1100
Fsp4HI GCNGC 2 cut(s) 742, 1250
FspBI CTAG 3 cut(s) 695, 849, 954
GluI GCNGC 2 cut(s) 742, 1250
GsaI CCCAGC 1 cut(s) 1065
HaeIII GGCC 5 cut(s) 102, 404, 412, 418, 790
HapII CCGG 2 cut(s) 99, 978
HgaI GACGC 1 cut(s) 1043
Hin1II CATG 7 cut(s) 36, 107, 235, 428, 783, 820, 1256
HincII GTYRAC 2 cut(s) 1111, 1146
HindII GTYRAC 2 cut(s) 1111, 1146
HindIII AAGCTT 2 cut(s) 211, 597
HinfI GANTC 5 cut(s) 658, 911, 1040, 1193, 1207
HpaII CCGG 2 cut(s) 99, 978
HphI GGTGA 5 cut(s) 28, 88, 122, 385, 467
Hpy166II GTNNAC 6 cut(s) 308, 394, 915, 924, 1111, 1146
Hpy188I TCNGA 5 cut(s) 225, 609, 651, 663, 1033
Hpy8I GTNNAC 6 cut(s) 308, 394, 915, 924, 1111, 1146
HpyAV CCTTC 4 cut(s) 433, 484, 493, 625
HpyCH4IV ACGT 1 cut(s) 1155
HpyF10VI GCNNNNNNNGC 4 cut(s) 707, 817, 1099, 1258
HpyF3I CTNAG 5 cut(s) 584, 918, 927, 1075, 1275
HpySE526I ACGT 1 cut(s) 1155
Hsp92II CATG 7 cut(s) 36, 107, 235, 428, 783, 820, 1256
Kzo9I GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
LmnI GCTCC 4 cut(s) 663, 776, 1084, 1186
Lsp1109I GCAGC 2 cut(s) 728, 1236
LweI GCATC 1 cut(s) 885
MaeI CTAG 3 cut(s) 695, 849, 954
MaeII ACGT 1 cut(s) 1155
MaeIII GTNAC 6 cut(s) 94, 351, 578, 782, 800, 935
MalI GATC 8 cut(s) 81, 282, 590, 606, 678, 760, 864, 904
MbiI CCGCTC 1 cut(s) 13
MboI GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
MflI RGATCY 2 cut(s) 862, 902
MhlI GDGCHC 3 cut(s) 926, 1104, 1161
MluCI AATT 7 cut(s) 24, 153, 189, 250, 566, 735, 1121
MlyI GAGTC 2 cut(s) 920, 1049
MmeI TCCRAC 1 cut(s) 467
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 5 cut(s) 192, 561, 654, 768, 1224
MslI CAYNNNNRTG 1 cut(s) 770
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 2 cut(s) 99, 978
MspR9I CCNGG 4 cut(s) 48, 150, 204, 295
MvaI CCWGG 4 cut(s) 48, 150, 204, 295
MwoI GCNNNNNNNGC 4 cut(s) 707, 817, 1099, 1258
NcoI CCATGG 2 cut(s) 32, 103
NdeII GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
NlaIII CATG 7 cut(s) 36, 107, 235, 428, 783, 820, 1256
NlaIV GGNNCC 4 cut(s) 550, 665, 1174, 1262
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 94, 351, 782
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 4 cut(s) 428, 783, 820, 1256
NspV TTCGAA 1 cut(s) 58
PceI AGGCCT 1 cut(s) 412
PfeI GAWTC 3 cut(s) 658, 1193, 1207
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 2 cut(s) 743, 1251
PleI GAGTC 2 cut(s) 919, 1048
PmaCI CACGTG 1 cut(s) 1156
PmlI CACGTG 1 cut(s) 1156
PpsI GAGTC 2 cut(s) 919, 1048
Ppu21I YACGTR 1 cut(s) 1156
PpuMI RGGWCCY 1 cut(s) 1172
PshBI ATTAAT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 4 cut(s) 46, 148, 202, 293
PspCI CACGTG 1 cut(s) 1156
PspFI CCCAGC 1 cut(s) 1061
PspGI CCWGG 4 cut(s) 46, 148, 202, 293
PspN4I GGNNCC 4 cut(s) 550, 665, 1174, 1262
PspPI GGNCC 5 cut(s) 44, 206, 221, 549, 1172
PspPPI RGGWCCY 1 cut(s) 1172
PstI CTGCAG 1 cut(s) 1003
PsuI RGATCY 2 cut(s) 862, 902
RsaI GTAC 3 cut(s) 395, 815, 853
RsaNI GTAC 3 cut(s) 394, 814, 852
RseI CAYNNNNRTG 1 cut(s) 770
SalI GTCGAC 1 cut(s) 1144
SaqAI TTAA 5 cut(s) 192, 561, 654, 768, 1224
SatI GCNGC 2 cut(s) 742, 1250
Sau3AI GATC 8 cut(s) 79, 280, 588, 604, 676, 758, 862, 902
Sau96I GGNCC 5 cut(s) 44, 206, 221, 549, 1172
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 2 cut(s) 920, 1049
ScrFI CCNGG 4 cut(s) 48, 150, 204, 295
SduI GDGCHC 3 cut(s) 926, 1104, 1161
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 1 cut(s) 999
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 5 cut(s) 44, 206, 221, 549, 1172
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 560, 1177
SmoI CTYRAG 2 cut(s) 560, 1177
Sse9I AATT 7 cut(s) 24, 153, 189, 250, 566, 735, 1121
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 3 cut(s) 13, 42, 380
SspMI CTAG 3 cut(s) 695, 849, 954
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 4 cut(s) 46, 148, 202, 293
StyI CCWWGG 3 cut(s) 32, 103, 507
TaiI ACGT 1 cut(s) 1158
TaqI TCGA 5 cut(s) 58, 82, 526, 1104, 1145
TasI AATT 7 cut(s) 24, 153, 189, 250, 566, 735, 1121
TatI WGTACW 3 cut(s) 393, 813, 851
TfiI GAWTC 3 cut(s) 658, 1193, 1207
Tru1I TTAA 5 cut(s) 192, 561, 654, 768, 1224
Tru9I TTAA 5 cut(s) 192, 561, 654, 768, 1224
TscAI CASTG 5 cut(s) 261, 627, 926, 931, 947
TseFI GTSAC 3 cut(s) 94, 351, 782
TseI GCWGC 2 cut(s) 741, 1249
Tsp45I GTSAC 3 cut(s) 94, 351, 782
TspDTI ATGAA 4 cut(s) 248, 325, 588, 980
TspRI CASTG 5 cut(s) 261, 627, 926, 931, 947
Van91I CCANNNNNTGG 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 560
VneI GTGCAC 1 cut(s) 922
VpaK11BI GGWCC 5 cut(s) 44, 206, 221, 549, 1172
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 24, 566
XceI RCATGY 4 cut(s) 428, 783, 820, 1256
XmiI GTMKAC 2 cut(s) 914, 1145
XspI CTAG 3 cut(s) 695, 849, 954
ZrmI AGTACT 1 cut(s) 853
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.