Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016263

Physical Location & Seq

Genomic Coordinates Reverse (-)

17793135 .. 17795523

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAGTTGATGGCGATGACTTCATTGTGAGGTATAAGTCACTTATAGGCCGCAAAGAGGTGATGGCGGTGGAGAGGGTGTACAGAAAGGCCATTAGGCCTCGGCCTCCACATGCAAAGAAAGAGAAGGGATGGATTGTTGGTGATATGGTTGAAGCGTTTGATACGAAGTGTTGGAAGGTTGGGACGGTAGCCAAGGTAGGGAAGAACAATCGAGTTGTCATTAGATTTCTCGGGTCCATTCAGCTTAAGGAATTTGATCAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAATAAGTGGTCAGTGATTGAGAAGGTTCAAAAGAAAAATCAGATTAAGATTCGGAGCCATAGATGGGATCATTCAAAAGTTCAACTAGAGGCAAGTTGGGCCGAACCTTTCTCAAAAGAGAAGAGAATTAGCTGCAAGAGAAGAAGATCAAACAGTAATGTGGGAGCATGTGACAGGCCATCAATGAGTAACCATTGGCTGTACATGCAGGTAGATAAAACATCAAGGAACAACTCTAGTACTGATATAGATCCCAAAATGAGAAAGGCAACCAGCTACGGGATGCATAGATCTTTTGAGTCTACTCAGTGCACTGAGGATAGTTACCAGTGTTCTGTGGCTAGTTGTAGTATGAATGAGCTTTCCGGCTCTCAAAATGGGAGTTCTGCAGAACTTGGAGAAGATATTTGTGATAGTTCTGACGCAGAGTCATCATTTCCATCTTCGGCTGGGAAAAACTCTCAGCTCCATTACCAGAGCCTTATGTGCTCGATGTTGACATCCACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

269

Amino Acids

30.67

Weight (kDa)

9.37

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22820
rosa_chinensis	RchiOBHm_Chr6g0289741
rosa_laevigata	RLG00000012270
rosa_multiflora	Rmu_sc0005640.1_g000017
rosa_roxburghii	Rroxscaffold_7G00177600 Rroxscaffold_7G00178100
rosa_rugosa	Rorug06G0206100 Rorug06G0206200 Rorug06G0206300 Rorug06G0206300
rosa_samantha	Rh6AG318100 Rh6BG325400 Rh6CG331000 Rh6DG316700
rosa_wichuraiana	Rw6G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	2 cut(s)	52, 68
AclWI	GGATC	4 cut(s)	284, 300, 372, 542
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	3 cut(s)	83, 500, 538
AfiI	CCNNNNNNNGG	4 cut(s)	58, 201, 361, 576
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	155, 326, 372, 380
AhdI	GACNNNNNGTC	1 cut(s)	724
AluBI	AGCT	6 cut(s)	247, 287, 429, 573, 658, 763
AluI	AGCT	6 cut(s)	247, 287, 429, 573, 658, 763
Alw21I	GWGCWC	2 cut(s)	611, 788
Alw44I	GTGCAC	1 cut(s)	607
AlwI	GGATC	4 cut(s)	284, 300, 372, 542
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	6 cut(s)	49, 90, 98, 104, 396, 473
ApaLI	GTGCAC	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	237, 396
AsuHPI	GGTGA	2 cut(s)	73, 155
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	237
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	611
Bbv12I	GWGCWC	2 cut(s)	611, 788
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	6 cut(s)	5, 58, 126, 354, 484, 745
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	3 cut(s)	383, 534, 639
BfmI	CTRYAG	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	2 cut(s)	52, 430
BlsI	GCNGC	2 cut(s)	53, 431
BmcAI	AGTACT	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	237
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	237, 396
BmiI	GGNNCC	2 cut(s)	238, 353
BmsI	GCATC	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	101, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 201, 361, 576
Bse1I	ACTGG	1 cut(s)	625
Bse21I	CCTNAGG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	101, 195
BseGI	GGATG	3 cut(s)	137, 585, 797
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	4 cut(s)	58, 201, 361, 576
BseMII	CTCAG	4 cut(s)	263, 603, 617, 773
BseNI	ACTGG	1 cut(s)	625
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	416
BseYI	CCCAGC	1 cut(s)	746
BshFI	GGCC	6 cut(s)	51, 92, 100, 106, 398, 475
BsiHKAI	GWGCWC	2 cut(s)	611, 788
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	58, 201, 361, 576
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	6 cut(s)	51, 92, 100, 106, 398, 475
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	611, 788
Bsp1407I	TGTACA	2 cut(s)	81, 498
Bsp143I	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
BspACI	CCGC	2 cut(s)	52, 68
BspANI	GGCC	6 cut(s)	51, 92, 100, 106, 398, 475
BspCNI	CTCAG	4 cut(s)	264, 604, 616, 772
BspLI	GGNNCC	2 cut(s)	238, 353
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	4 cut(s)	284, 300, 372, 542
BspTI	CTTAAG	1 cut(s)	248
BsrGI	TGTACA	2 cut(s)	81, 498
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	2 cut(s)	101, 195
BssMI	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	190, 452
Bst6I	CTCTTC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	2 cut(s)	81, 498
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	272, 603, 612, 759
BstF5I	GGATG	3 cut(s)	137, 585, 797
BstKTI	GATC	7 cut(s)	262, 279, 295, 367, 446, 550, 590
BstMBI	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 502, 783
BstNSI	RCATGY	3 cut(s)	116, 468, 505
BstSFI	CTRYAG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	2 cut(s)	547, 587
BstYI	RGATCY	2 cut(s)	547, 587
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	6 cut(s)	51, 92, 100, 106, 398, 475
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	137, 585, 797
BtsIMutI	CAGTG	4 cut(s)	315, 609, 611, 632
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	237, 396
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	82, 499, 537
CviAII	CATG	3 cut(s)	113, 465, 502
CviQI	GTAC	3 cut(s)	82, 499, 537
DdeI	CTNAG	4 cut(s)	272, 603, 612, 759
DpnI	GATC	7 cut(s)	261, 278, 294, 366, 445, 549, 589
DpnII	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
DriI	GACNNNNNGTC	1 cut(s)	724
Eam1104I	CTCTTC	1 cut(s)	413
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	116, 468, 505
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	112, 464, 501
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	599
Fnu4HI	GCNGC	2 cut(s)	52, 430
FokI	GGATG	3 cut(s)	144, 592, 784
Fsp4HI	GCNGC	2 cut(s)	52, 430
FspBI	CTAG	3 cut(s)	383, 534, 639
GluI	GCNGC	2 cut(s)	52, 430
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	6 cut(s)	51, 92, 100, 106, 398, 475
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	3 cut(s)	116, 468, 505
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	3 cut(s)	346, 596, 725
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	2 cut(s)	73, 155
Hpy166II	GTNNAC	4 cut(s)	82, 600, 609, 795
Hpy188I	TCNGA	4 cut(s)	297, 339, 351, 718
Hpy8I	GTNNAC	4 cut(s)	82, 600, 609, 795
HpyAV	CCTTC	3 cut(s)	121, 172, 313
HpyCH4III	ACNGT	2 cut(s)	190, 452
HpyCH4V	TGCA	6 cut(s)	116, 432, 505, 583, 609, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 502, 783
HpyF3I	CTNAG	4 cut(s)	272, 603, 612, 759
Hsp92II	CATG	3 cut(s)	116, 468, 505
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
LmnI	GCTCC	3 cut(s)	351, 461, 768
LpnPI	CCDG	9 cut(s)	265, 284, 457, 491, 583, 638, 676, 732, 785
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	3 cut(s)	383, 534, 639
MaeIII	GTNAC	5 cut(s)	39, 266, 467, 485, 620
MalI	GATC	7 cut(s)	261, 278, 294, 366, 445, 549, 589
MboI	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
MboII	GAAGA	6 cut(s)	217, 430, 450, 453, 710, 732
MflI	RGATCY	2 cut(s)	547, 587
MhlI	GDGCHC	2 cut(s)	611, 788
MluCI	AATT	3 cut(s)	254, 423, 805
MlyI	GAGTC	2 cut(s)	605, 734
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	8 cut(s)	24, 52, 69, 111, 117, 267, 379, 607
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	2 cut(s)	249, 342
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	395, 502, 783
NdeII	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
NlaIII	CATG	3 cut(s)	116, 468, 505
NlaIV	GGNNCC	2 cut(s)	238, 353
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	39, 467
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	3 cut(s)	116, 468, 505
PceI	AGGCCT	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	53, 431
PleI	GAGTC	2 cut(s)	604, 733
PpsI	GAGTC	2 cut(s)	604, 733
PspFI	CCCAGC	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	238, 353
PspPI	GGNCC	2 cut(s)	237, 396
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	547, 587
RsaI	GTAC	3 cut(s)	83, 500, 538
RsaNI	GTAC	3 cut(s)	82, 499, 537
SaqAI	TTAA	2 cut(s)	249, 342
SatI	GCNGC	2 cut(s)	52, 430
Sau3AI	GATC	7 cut(s)	259, 276, 292, 364, 443, 547, 587
Sau96I	GGNCC	2 cut(s)	237, 396
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	605, 734
SduI	GDGCHC	2 cut(s)	611, 788
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	254, 423, 805
SseBI	AGGCCT	1 cut(s)	100
SsiI	CCGC	2 cut(s)	52, 68
SspMI	CTAG	3 cut(s)	383, 534, 639
StuI	AGGCCT	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	190, 452
TaqI	TCGA	2 cut(s)	214, 788
TasI	AATT	3 cut(s)	254, 423, 805
TatI	WGTACW	3 cut(s)	81, 498, 536
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	2 cut(s)	249, 342
Tru9I	TTAA	2 cut(s)	249, 342
TscAI	CASTG	4 cut(s)	315, 611, 616, 632
TseFI	GTSAC	2 cut(s)	39, 467
TseI	GCWGC	1 cut(s)	429
Tsp45I	GTSAC	2 cut(s)	39, 467
TspDTI	ATGAA	2 cut(s)	13, 665
TspRI	CASTG	4 cut(s)	315, 611, 616, 632
Vha464I	CTTAAG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	3 cut(s)	116, 468, 505
XmiI	GTMKAC	1 cut(s)	599
XspI	CTAG	3 cut(s)	383, 534, 639
ZrmI	AGTACT	1 cut(s)	538
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.