Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016263

Physical Location & Seq

Genomic Coordinates Forward (+)

51914892 .. 51917627

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGTGTTACAGAGTAGTAAATTGAATCTCTGTCTGCTGCCCAAAATCAAAGTTTTGGGTTTGAGTGGCGGATTGGGAAGAAACCTGTTTTTGTATCACAGCACCTTGATCCTCTCTGTTGACTTTCTTCAGGTCCAAGCTTCCAAAAACATGAAGCTGAAAGTAGGCAATTCAGTGGAGGTGTTGAGAAAAGAAAATGATCTGTGTATGTCCTGGTTTTCAGGTAAAGTAATGGCAGTTGATGGCGATGACTTCATTGTGAGGTATATGTCACTTATAGACCGCAAAGAGGTGATGGCGGTGGAGAGGGTGTACAGAAAGGCCATTAGGCCTCGGCCTCCACATGCAAAGAAAGAGAAGGGATGGATTGTTGGTGATATGGTTGAAGTGTTTGATACGAAGTGTTGGAAGGTTGGGAAGGTAGCCAAGGTAGGGAAGAACAATCGAGTTGTCATTAGATTTCTCGGGTCCATTCAGCTTAAGGAATTTGATGAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAATAAGTGGTCAGTGATTGAGAAGGTTCAAAAGAAAAATCAGGTTAAGATTCGGAGCCATAGATGGGATCATTCAAAAGTTCAACTAGAGGCAAGTTGTGCAGAACCTTTATCAAAAGAGAAGAGAATTAGCTGCAAGAGAAGAAGATCAAACATTAATGTGGGAGCATGTGACAGGCCATCAATGAGTAACCATTGGCTGTACATGCAGGTAGATAAAACATCAAGGAACAACTCTAGTACTGATATAGATCCCAAAATGAGAAAGGCAACCAGCTATGAGATGCATAGATCTTTTGAGTCTACTCAGTGCACTGAGGATAGTTACCAGTGTTCTGTGGCTAGTTGTAGTATGAATGAGCTTTCCGGATCTCAAAATGGGAGTTCTGCAGAACTTGGAGAAGATATTTGTGATAGTTCTGACGCAGAGTCATCATTTCCATCTTCGGCTGGGAAAAAACTCTCAGCTCCATTACCAGAGCCTTATGTGCTCGATGTTGACATCCACAAATTAGAGCTTCACGCATACAAGTCGACTTTGCAGGTGCTCTATGCTTCAGGTCCCTTGAGTTGGGAGCAGGAATCCCTCCTAACGAATCTTCGTCTGTCCCTTCATATAACAAATGAGGAACATTTGCTGCATTTGAGGCACCTCTTATCTTCTCAGGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

400

Amino Acids

45.49

Weight (kDa)

9.16

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	56 - 114	2.2e-11	Agenet domain
ENT	PF03735	343 - 389	3.8e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22820
rosa_chinensis	RchiOBHm_Chr6g0289741
rosa_laevigata	RLG00000012270
rosa_multiflora	Rmu_sc0005640.1_g000017
rosa_roxburghii	Rroxscaffold_7G00177600 Rroxscaffold_7G00178100
rosa_rugosa	Rorug06G0206100 Rorug06G0206200 Rorug06G0206300 Rorug06G0206300
rosa_samantha	Rh6AG318100 Rh6BG325400 Rh6CG331000 Rh6DG316700
rosa_wichuraiana	Rw6G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1060
Acc36I	ACCTGC	2 cut(s)	727, 1060
AccB1I	GGYRCC	1 cut(s)	1176
AccI	GTMKAC	2 cut(s)	830, 1061
AccIII	TCCGGA	1 cut(s)	893
AciI	CCGC	3 cut(s)	69, 283, 299
AclWI	GGATC	6 cut(s)	103, 515, 531, 603, 773, 904
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	2 cut(s)	113, 1068
AfaI	GTAC	3 cut(s)	314, 731, 769
AfiI	CCNNNNNNNGG	4 cut(s)	289, 432, 592, 1098
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	5 cut(s)	25, 386, 557, 603, 611
AhdI	GACNNNNNGTC	1 cut(s)	955
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	9 cut(s)	140, 157, 478, 518, 660, 804, 889, 995, 1045
AluI	AGCT	9 cut(s)	140, 157, 478, 518, 660, 804, 889, 995, 1045
Alw21I	GWGCWC	3 cut(s)	842, 1020, 1077
Alw44I	GTGCAC	1 cut(s)	838
AlwI	GGATC	6 cut(s)	103, 515, 531, 603, 773, 904
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	893
AoxI	GGCC	4 cut(s)	321, 329, 335, 704
ApaLI	GTGCAC	1 cut(s)	838
ApeKI	GCWGC	3 cut(s)	37, 660, 1165
ApoI	RAATTY	1 cut(s)	485
AseI	ATTAAT	1 cut(s)	684
AspS9I	GGNCC	3 cut(s)	133, 468, 1088
AsuHPI	GGTGA	2 cut(s)	304, 386
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	133, 468, 1088
AxyI	CCTNAGG	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	842
BanI	GGYRCC	1 cut(s)	1176
Bbv12I	GWGCWC	3 cut(s)	842, 1020, 1077
BbvI	GCAGC	3 cut(s)	24, 647, 1152
BccI	CCATC	6 cut(s)	236, 289, 357, 585, 715, 976
BcgI	CGANNNNNNTGC	2 cut(s)	1041, 1075
BciT130I	CCWGG	1 cut(s)	214
BfaI	CTAG	3 cut(s)	614, 765, 870
BfmI	CTRYAG	1 cut(s)	915
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	727, 1060
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	3 cut(s)	38, 661, 1166
BlsI	GCNGC	3 cut(s)	39, 662, 1167
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	3 cut(s)	133, 468, 1088
BmeRI	GACNNNNNGTC	1 cut(s)	955
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	3 cut(s)	133, 468, 1088
BmiI	GGNNCC	4 cut(s)	469, 584, 1090, 1178
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	1114
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	332, 426
BsaWI	WCCGGW	1 cut(s)	893
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 432, 592, 1098
Bse1I	ACTGG	1 cut(s)	856
Bse21I	CCTNAGG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	777
BseAI	TCCGGA	1 cut(s)	893
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	332, 426
BseGI	GGATG	2 cut(s)	368, 1029
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	289, 432, 592, 1098
BseMII	CTCAG	4 cut(s)	494, 834, 848, 1005
BseNI	ACTGG	1 cut(s)	856
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	3 cut(s)	24, 647, 1152
BseYI	CCCAGC	1 cut(s)	977
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	4 cut(s)	323, 331, 337, 706
BshNI	GGYRCC	1 cut(s)	1176
BsiHKAI	GWGCWC	3 cut(s)	842, 1020, 1077
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	894
BslFI	GGGAC	2 cut(s)	1074, 1120
BslI	CCNNNNNNNGG	4 cut(s)	289, 432, 592, 1098
BsmFI	GGGAC	2 cut(s)	1074, 1120
BsnI	GGCC	4 cut(s)	323, 331, 337, 706
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	842, 1020, 1077
Bsp13I	TCCGGA	1 cut(s)	893
Bsp1407I	TGTACA	2 cut(s)	312, 729
Bsp143I	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
BspACI	CCGC	3 cut(s)	69, 283, 299
BspANI	GGCC	4 cut(s)	323, 331, 337, 706
BspCNI	CTCAG	4 cut(s)	495, 835, 847, 1004
BspEI	TCCGGA	1 cut(s)	893
BspLI	GGNNCC	4 cut(s)	469, 584, 1090, 1178
BspMAI	CTGCAG	1 cut(s)	919
BspMI	ACCTGC	2 cut(s)	727, 1060
BspPI	GGATC	6 cut(s)	103, 515, 531, 603, 773, 904
BspT107I	GGYRCC	1 cut(s)	1176
BspTI	CTTAAG	1 cut(s)	479
BsrGI	TGTACA	2 cut(s)	312, 729
BsrI	ACTGG	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	332, 426
BssMI	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	644
BstAFI	CTTAAG	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstAUI	TGTACA	2 cut(s)	312, 729
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	5 cut(s)	503, 834, 843, 991, 1191
BstF5I	GGATG	2 cut(s)	368, 1029
BstKTI	GATC	9 cut(s)	111, 202, 510, 526, 598, 677, 781, 821, 899
BstMBI	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
BstMWI	GCNNNNNNNGC	4 cut(s)	626, 733, 1015, 1174
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	347, 699, 736
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	842
BstV1I	GCAGC	3 cut(s)	24, 647, 1152
BstX2I	RGATCY	3 cut(s)	778, 818, 896
BstYI	RGATCY	3 cut(s)	778, 818, 896
Bsu36I	CCTNAGG	1 cut(s)	503
BsuRI	GGCC	4 cut(s)	323, 331, 337, 706
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	368, 1029
BtsIMutI	CAGTG	5 cut(s)	180, 546, 840, 842, 863
BveI	ACCTGC	2 cut(s)	727, 1060
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	133, 468, 1088
CseI	GACGC	1 cut(s)	959
Csp6I	GTAC	3 cut(s)	313, 730, 768
CviAII	CATG	4 cut(s)	151, 344, 696, 733
CviQI	GTAC	3 cut(s)	313, 730, 768
DdeI	CTNAG	5 cut(s)	503, 834, 843, 991, 1191
DpnI	GATC	9 cut(s)	110, 201, 509, 525, 597, 676, 780, 820, 898
DpnII	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
DriI	GACNNNNNGTC	1 cut(s)	955
Eam1104I	CTCTTC	1 cut(s)	644
Eam1105I	GACNNNNNGTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	644
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	426
Eco147I	AGGCCT	1 cut(s)	331
Eco47I	GGWCC	3 cut(s)	133, 468, 1088
Eco57I	CTGAAG	2 cut(s)	113, 1068
Eco81I	CCTNAGG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	1088
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	4 cut(s)	154, 347, 699, 736
FaqI	GGGAC	2 cut(s)	1074, 1120
FatI	CATG	4 cut(s)	150, 343, 695, 732
FblI	GTMKAC	2 cut(s)	830, 1061
Fnu4HI	GCNGC	3 cut(s)	38, 661, 1166
FokI	GGATG	2 cut(s)	375, 1016
Fsp4HI	GCNGC	3 cut(s)	38, 661, 1166
FspBI	CTAG	3 cut(s)	614, 765, 870
GluI	GCNGC	3 cut(s)	38, 661, 1166
GsaI	CCCAGC	1 cut(s)	981
HaeIII	GGCC	4 cut(s)	323, 331, 337, 706
HapII	CCGG	1 cut(s)	894
HgaI	GACGC	1 cut(s)	959
Hin1II	CATG	4 cut(s)	154, 347, 699, 736
HincII	GTYRAC	3 cut(s)	121, 1027, 1062
HindII	GTYRAC	3 cut(s)	121, 1027, 1062
HindIII	AAGCTT	2 cut(s)	138, 516
HinfI	GANTC	6 cut(s)	25, 577, 827, 956, 1109, 1123
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	2 cut(s)	304, 386
Hpy166II	GTNNAC	6 cut(s)	121, 313, 831, 840, 1027, 1062
Hpy188I	TCNGA	3 cut(s)	528, 582, 949
Hpy188III	TCNNGA	1 cut(s)	894
Hpy8I	GTNNAC	6 cut(s)	121, 313, 831, 840, 1027, 1062
HpyAV	CCTTC	5 cut(s)	352, 403, 412, 544, 1148
HpyCH4V	TGCA	9 cut(s)	347, 629, 663, 736, 814, 840, 917, 1069, 1168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	626, 733, 1015, 1174
HpyF3I	CTNAG	5 cut(s)	503, 834, 843, 991, 1191
Hsp92II	CATG	4 cut(s)	154, 347, 699, 736
Kpn2I	TCCGGA	1 cut(s)	893
Kzo9I	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
LmnI	GCTCC	4 cut(s)	582, 692, 1000, 1102
Lsp1109I	GCAGC	3 cut(s)	24, 647, 1152
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	3 cut(s)	614, 765, 870
MaeIII	GTNAC	6 cut(s)	6, 270, 497, 698, 716, 851
MalI	GATC	9 cut(s)	110, 201, 509, 525, 597, 676, 780, 820, 898
MboI	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
MflI	RGATCY	3 cut(s)	778, 818, 896
MhlI	GDGCHC	3 cut(s)	842, 1020, 1077
MluCI	AATT	5 cut(s)	20, 169, 485, 654, 1037
MlyI	GAGTC	2 cut(s)	836, 965
MmeI	TCCRAC	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	816
MroI	TCCGGA	1 cut(s)	893
MseI	TTAA	3 cut(s)	480, 573, 684
MslI	CAYNNNNRTG	1 cut(s)	686
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	626, 733, 1015, 1174
NdeII	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
NlaIII	CATG	4 cut(s)	154, 347, 699, 736
NlaIV	GGNNCC	4 cut(s)	469, 584, 1090, 1178
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	270, 698
NsiI	ATGCAT	1 cut(s)	816
NspI	RCATGY	3 cut(s)	347, 699, 736
PaqCI	CACCTGC	1 cut(s)	1060
PceI	AGGCCT	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	25, 577, 1109, 1123
PkrI	GCNGC	3 cut(s)	39, 662, 1167
PleI	GAGTC	2 cut(s)	835, 964
PpsI	GAGTC	2 cut(s)	835, 964
PpuMI	RGGWCCY	1 cut(s)	1088
PshBI	ATTAAT	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	1088
Psp6I	CCWGG	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	977
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	4 cut(s)	469, 584, 1090, 1178
PspPI	GGNCC	3 cut(s)	133, 468, 1088
PspPPI	RGGWCCY	1 cut(s)	1088
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	3 cut(s)	778, 818, 896
RsaI	GTAC	3 cut(s)	314, 731, 769
RsaNI	GTAC	3 cut(s)	313, 730, 768
RseI	CAYNNNNRTG	1 cut(s)	686
SalI	GTCGAC	1 cut(s)	1060
SaqAI	TTAA	3 cut(s)	480, 573, 684
SatI	GCNGC	3 cut(s)	38, 661, 1166
Sau3AI	GATC	9 cut(s)	108, 199, 507, 523, 595, 674, 778, 818, 896
Sau96I	GGNCC	3 cut(s)	133, 468, 1088
ScaI	AGTACT	1 cut(s)	769
SchI	GAGTC	2 cut(s)	836, 965
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	3 cut(s)	842, 1020, 1077
SfaNI	GCATC	1 cut(s)	801
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	3 cut(s)	133, 468, 1088
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	479, 1093
SmoI	CTYRAG	2 cut(s)	479, 1093
Sse9I	AATT	5 cut(s)	20, 169, 485, 654, 1037
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	69, 283, 299
SspMI	CTAG	3 cut(s)	614, 765, 870
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	426
TaqI	TCGA	3 cut(s)	445, 1020, 1061
TasI	AATT	5 cut(s)	20, 169, 485, 654, 1037
TatI	WGTACW	3 cut(s)	312, 729, 767
TfiI	GAWTC	4 cut(s)	25, 577, 1109, 1123
Tru1I	TTAA	3 cut(s)	480, 573, 684
Tru9I	TTAA	3 cut(s)	480, 573, 684
TscAI	CASTG	5 cut(s)	180, 546, 842, 847, 863
TseFI	GTSAC	2 cut(s)	270, 698
TseI	GCWGC	3 cut(s)	37, 660, 1165
Tsp45I	GTSAC	2 cut(s)	270, 698
TspDTI	ATGAA	5 cut(s)	167, 244, 507, 896, 1130
TspRI	CASTG	5 cut(s)	180, 546, 842, 847, 863
Vha464I	CTTAAG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	838
VpaK11BI	GGWCC	3 cut(s)	133, 468, 1088
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	3 cut(s)	347, 699, 736
XmiI	GTMKAC	2 cut(s)	830, 1061
XspI	CTAG	3 cut(s)	614, 765, 870
ZrmI	AGTACT	1 cut(s)	769
Zsp2I	ATGCAT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.