Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016263

Physical Location & Seq

Genomic Coordinates Reverse (-)

16932797 .. 16934923

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGATTTTCAAAACTAACCCAAATCACCAATCAAATCCCATCCCAGGAATTGGATTTCAATGGAAGAAAGCACCATTCTGCATAATTAAACAAGTCCCAGGTCCAAGCTTGAAAGATTCCAAAAACATGAAGCTGAAAGTAGGCAATTCAGTGGAGGTGTTGAGAAAAGAAAATGATCTGTGTATGTCCTGGTTTTCAGGTAAAGTAATGGCAGTCGATGGCGATGACTTCATTGTGAGGTATAAGTCACTTATAGACCGCAAAGAGGTGATGGCGGTGGAGAGGGTGTACAGAAAGGCCATTAGGCCTCGGTCTCCACATGCAAAGAAAGAGAAGGGATGGATTGTTGGTGATATGGTTGAAGTGTTTGATACGAAGTGTTGGAAGGTTGGGAAGGTAGCCAAGCTAGGGAAGAACAATCGAGTTGTCATTAGATTTCTCGGGTCCATTCAGCTTAAGGAATTTGATGAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAATAAGTGGTCAGTGATTGAGAAGGTTCAAAAGAAAAATCAGATTAAGATTCGGAGCCATAGATGGGATCATTCAAAAGTTCAACCAGAGGCAAGTTGTGCAGAACCTTTCTCAAAAGAGAAGAGAATTAGCTGCAAGAGAAGAAGATCAAACATTAATGTGGGAGCATGTGACAGGCCACCAATGAGTAACCATTGGCTGTACATGCAGGTAGATAAAACATCAAGGAACAACTCTAGTACTGATATAGATCCCAAAATGAGAGAGGCAACCAGCTATGGGATGCATAGATCTTTTGAGTCTACTCAGTGCACTGAGGACAGTTACCAGTGTTCTGTGGCTAGTTGTAGTATGAATGAGCTTTCCGCCTCTCAAAATGGGAGTTCTGCAGAACTTGGAGAAGATATTTGTGATAGTTCTGACGCAGAGTCATCATTTCCATCTTCGGCTGGGAAAAAACTCTCAGCTCCATTACCAGAGCCTTATGTGCTCGATGTTGACATCCACAAATTAGAGCTTCACGCATACAAGTCGACTTTGCAGGTGCTCTATGCTTCAGGTCCCTTGAGTTGGGAGCAGGAATCCCTCCTAACGAATCTTCGTCTGTCCCTTCATATAACAAATGAGGAACATTTGCTGCATTTGAGGCACCTCTTATCTTCTCAGGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

393

Amino Acids

44.71

Weight (kDa)

9.2

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	48 - 106	1e-10	Agenet domain
ENT	PF03735	335 - 381	3.7e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22820
rosa_chinensis	RchiOBHm_Chr6g0289741
rosa_laevigata	RLG00000012270
rosa_multiflora	Rmu_sc0005640.1_g000017
rosa_roxburghii	Rroxscaffold_7G00177600 Rroxscaffold_7G00178100
rosa_rugosa	Rorug06G0206100 Rorug06G0206200 Rorug06G0206300 Rorug06G0206300
rosa_samantha	Rh6AG318100 Rh6BG325400 Rh6CG331000 Rh6DG316700
rosa_wichuraiana	Rw6G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1036
Acc36I	ACCTGC	2 cut(s)	703, 1036
AccB1I	GGYRCC	1 cut(s)	1152
AccB7I	CCANNNNNTGG	1 cut(s)	50
AccI	GTMKAC	2 cut(s)	806, 1037
AciI	CCGC	3 cut(s)	259, 275, 870
AclWI	GGATC	4 cut(s)	491, 507, 579, 749
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	1044
AfaI	GTAC	3 cut(s)	290, 707, 745
AfiI	CCNNNNNNNGG	7 cut(s)	44, 50, 265, 408, 568, 783, 1074
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	7 cut(s)	10, 59, 112, 362, 533, 579, 587
AhdI	GACNNNNNGTC	1 cut(s)	931
AjnI	CCWGG	3 cut(s)	43, 97, 188
Alw21I	GWGCWC	3 cut(s)	818, 996, 1053
Alw26I	GTCTC	1 cut(s)	318
Alw44I	GTGCAC	1 cut(s)	814
AlwI	GGATC	4 cut(s)	491, 507, 579, 749
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	297, 305, 680
ApaLI	GTGCAC	1 cut(s)	814
ApeKI	GCWGC	2 cut(s)	636, 1141
ApoI	RAATTY	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	660
AspS9I	GGNCC	3 cut(s)	101, 444, 1064
AsuHPI	GGTGA	3 cut(s)	17, 280, 362
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	101, 444, 1064
AxyI	CCTNAGG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	818
BanI	GGYRCC	1 cut(s)	1152
Bbv12I	GWGCWC	3 cut(s)	818, 996, 1053
BbvI	GCAGC	2 cut(s)	623, 1128
BccI	CCATC	6 cut(s)	47, 212, 265, 333, 561, 952
BcgI	CGANNNNNNTGC	2 cut(s)	1017, 1051
BciT130I	CCWGG	3 cut(s)	45, 99, 190
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	407, 741, 846
BfmI	CTRYAG	1 cut(s)	891
BfrI	CTTAAG	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	703, 1036
BglII	AGATCT	1 cut(s)	794
BisI	GCNGC	2 cut(s)	637, 1142
BlsI	GCNGC	2 cut(s)	638, 1143
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	3 cut(s)	45, 99, 190
Bme18I	GGWCC	3 cut(s)	101, 444, 1064
BmeRI	GACNNNNNGTC	1 cut(s)	931
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	101, 444, 1064
BmiI	GGNNCC	4 cut(s)	445, 560, 1066, 1154
BmrFI	CCNGG	3 cut(s)	45, 99, 190
BmsI	GCATC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	1090
BsaBI	GATNNNNATC	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	43, 97, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 50, 265, 408, 568, 783, 1074
Bse1I	ACTGG	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	479
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	3 cut(s)	45, 99, 190
BseDI	CCNNGG	3 cut(s)	43, 97, 308
BseGI	GGATG	4 cut(s)	39, 344, 792, 1005
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	7 cut(s)	44, 50, 265, 408, 568, 783, 1074
BseMII	CTCAG	4 cut(s)	470, 810, 824, 981
BseNI	ACTGG	1 cut(s)	832
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	2 cut(s)	623, 1128
BseYI	CCCAGC	1 cut(s)	953
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	299, 307, 682
BshNI	GGYRCC	1 cut(s)	1152
BsiHKAI	GWGCWC	3 cut(s)	818, 996, 1053
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	3 cut(s)	80, 1050, 1096
BslI	CCNNNNNNNGG	7 cut(s)	44, 50, 265, 408, 568, 783, 1074
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	3 cut(s)	80, 1050, 1096
BsnI	GGCC	3 cut(s)	299, 307, 682
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	818, 996, 1053
Bsp1407I	TGTACA	2 cut(s)	288, 705
Bsp143I	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
BspACI	CCGC	3 cut(s)	259, 275, 870
BspANI	GGCC	3 cut(s)	299, 307, 682
BspCNI	CTCAG	4 cut(s)	471, 811, 823, 980
BspLI	GGNNCC	4 cut(s)	445, 560, 1066, 1154
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	2 cut(s)	703, 1036
BspPI	GGATC	4 cut(s)	491, 507, 579, 749
BspT107I	GGYRCC	1 cut(s)	1152
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	318
BsrGI	TGTACA	2 cut(s)	288, 705
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	3 cut(s)	43, 97, 308
BssMI	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
Bst2UI	CCWGG	3 cut(s)	45, 99, 190
Bst4CI	ACNGT	1 cut(s)	827
Bst6I	CTCTTC	1 cut(s)	620
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstAUI	TGTACA	2 cut(s)	288, 705
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	5 cut(s)	479, 810, 819, 967, 1167
BstF5I	GGATG	4 cut(s)	39, 344, 792, 1005
BstKTI	GATC	7 cut(s)	178, 486, 502, 574, 653, 757, 797
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
BstMWI	GCNNNNNNNGC	4 cut(s)	602, 709, 991, 1150
BstNI	CCWGG	3 cut(s)	45, 99, 190
BstNSI	RCATGY	3 cut(s)	323, 675, 712
BstSCI	CCNGG	3 cut(s)	43, 97, 188
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	2 cut(s)	623, 1128
BstX2I	RGATCY	2 cut(s)	754, 794
BstYI	RGATCY	2 cut(s)	754, 794
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	299, 307, 682
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	39, 344, 792, 1005
BtsIMutI	CAGTG	5 cut(s)	156, 522, 816, 818, 839
BveI	ACCTGC	2 cut(s)	703, 1036
Cac8I	GCNNGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	101, 444, 1064
CseI	GACGC	1 cut(s)	935
Csp6I	GTAC	3 cut(s)	289, 706, 744
CviAII	CATG	4 cut(s)	127, 320, 672, 709
CviQI	GTAC	3 cut(s)	289, 706, 744
DdeI	CTNAG	5 cut(s)	479, 810, 819, 967, 1167
DpnI	GATC	7 cut(s)	177, 485, 501, 573, 652, 756, 796
DpnII	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
DriI	GACNNNNNGTC	1 cut(s)	931
Eam1104I	CTCTTC	1 cut(s)	620
Eam1105I	GACNNNNNGTC	1 cut(s)	931
EarI	CTCTTC	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	3 cut(s)	101, 444, 1064
Eco57I	CTGAAG	1 cut(s)	1044
Eco81I	CCTNAGG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	1064
EcoRII	CCWGG	3 cut(s)	43, 97, 188
EcoT22I	ATGCAT	1 cut(s)	792
FaeI	CATG	4 cut(s)	130, 323, 675, 712
FaqI	GGGAC	3 cut(s)	80, 1050, 1096
FatI	CATG	4 cut(s)	126, 319, 671, 708
FblI	GTMKAC	2 cut(s)	806, 1037
Fnu4HI	GCNGC	2 cut(s)	637, 1142
FokI	GGATG	4 cut(s)	26, 351, 799, 992
Fsp4HI	GCNGC	2 cut(s)	637, 1142
FspBI	CTAG	3 cut(s)	407, 741, 846
GluI	GCNGC	2 cut(s)	637, 1142
GsaI	CCCAGC	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	299, 307, 682
HgaI	GACGC	1 cut(s)	935
Hin1II	CATG	4 cut(s)	130, 323, 675, 712
HincII	GTYRAC	2 cut(s)	1003, 1038
HindII	GTYRAC	2 cut(s)	1003, 1038
HindIII	AAGCTT	2 cut(s)	106, 492
HinfI	GANTC	6 cut(s)	116, 553, 803, 932, 1085, 1099
HphI	GGTGA	3 cut(s)	17, 280, 362
Hpy166II	GTNNAC	5 cut(s)	289, 807, 816, 1003, 1038
Hpy188I	TCNGA	4 cut(s)	504, 546, 558, 925
Hpy8I	GTNNAC	5 cut(s)	289, 807, 816, 1003, 1038
HpyAV	CCTTC	5 cut(s)	328, 379, 388, 520, 1124
HpyCH4III	ACNGT	1 cut(s)	827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	602, 709, 991, 1150
HpyF3I	CTNAG	5 cut(s)	479, 810, 819, 967, 1167
Hsp92II	CATG	4 cut(s)	130, 323, 675, 712
Kzo9I	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
LmnI	GCTCC	4 cut(s)	558, 668, 976, 1078
Lsp1109I	GCAGC	2 cut(s)	623, 1128
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	3 cut(s)	407, 741, 846
MaeIII	GTNAC	5 cut(s)	246, 473, 674, 692, 827
MalI	GATC	7 cut(s)	177, 485, 501, 573, 652, 756, 796
MboI	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
MboII	GAAGA	9 cut(s)	76, 424, 637, 657, 660, 917, 939, 1094, 1155
MflI	RGATCY	2 cut(s)	754, 794
MhlI	GDGCHC	3 cut(s)	818, 996, 1053
MluCI	AATT	6 cut(s)	48, 84, 145, 461, 630, 1013
MlyI	GAGTC	2 cut(s)	812, 941
MmeI	TCCRAC	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	792
MseI	TTAA	4 cut(s)	87, 456, 549, 660
MslI	CAYNNNNRTG	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	455
MspR9I	CCNGG	3 cut(s)	45, 99, 190
MvaI	CCWGG	3 cut(s)	45, 99, 190
MwoI	GCNNNNNNNGC	4 cut(s)	602, 709, 991, 1150
NdeII	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
NlaIII	CATG	4 cut(s)	130, 323, 675, 712
NlaIV	GGNNCC	4 cut(s)	445, 560, 1066, 1154
NmuCI	GTSAC	2 cut(s)	246, 674
NsiI	ATGCAT	1 cut(s)	792
NspI	RCATGY	3 cut(s)	323, 675, 712
PaqCI	CACCTGC	1 cut(s)	1036
PceI	AGGCCT	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	116, 553, 1085, 1099
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	638, 1143
PleI	GAGTC	2 cut(s)	811, 940
PpsI	GAGTC	2 cut(s)	811, 940
PpuMI	RGGWCCY	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	1064
Psp6I	CCWGG	3 cut(s)	43, 97, 188
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	3 cut(s)	43, 97, 188
PspN4I	GGNNCC	4 cut(s)	445, 560, 1066, 1154
PspPI	GGNCC	3 cut(s)	101, 444, 1064
PspPPI	RGGWCCY	1 cut(s)	1064
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	754, 794
RsaI	GTAC	3 cut(s)	290, 707, 745
RsaNI	GTAC	3 cut(s)	289, 706, 744
RseI	CAYNNNNRTG	1 cut(s)	662
SalI	GTCGAC	1 cut(s)	1036
SaqAI	TTAA	4 cut(s)	87, 456, 549, 660
SatI	GCNGC	2 cut(s)	637, 1142
Sau3AI	GATC	7 cut(s)	175, 483, 499, 571, 650, 754, 794
Sau96I	GGNCC	3 cut(s)	101, 444, 1064
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	2 cut(s)	812, 941
ScrFI	CCNGG	3 cut(s)	45, 99, 190
SduI	GDGCHC	3 cut(s)	818, 996, 1053
SfaNI	GCATC	1 cut(s)	777
SfcI	CTRYAG	1 cut(s)	891
SinI	GGWCC	3 cut(s)	101, 444, 1064
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	455, 1069
SmoI	CTYRAG	2 cut(s)	455, 1069
Sse9I	AATT	6 cut(s)	48, 84, 145, 461, 630, 1013
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	259, 275, 870
SspMI	CTAG	3 cut(s)	407, 741, 846
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	3 cut(s)	43, 97, 188
TaaI	ACNGT	1 cut(s)	827
TaqI	TCGA	4 cut(s)	216, 421, 996, 1037
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	6 cut(s)	48, 84, 145, 461, 630, 1013
TatI	WGTACW	3 cut(s)	288, 705, 743
TfiI	GAWTC	4 cut(s)	116, 553, 1085, 1099
Tru1I	TTAA	4 cut(s)	87, 456, 549, 660
Tru9I	TTAA	4 cut(s)	87, 456, 549, 660
TscAI	CASTG	5 cut(s)	156, 522, 818, 823, 839
TseFI	GTSAC	2 cut(s)	246, 674
TseI	GCWGC	2 cut(s)	636, 1141
Tsp45I	GTSAC	2 cut(s)	246, 674
TspDTI	ATGAA	5 cut(s)	143, 220, 483, 872, 1106
TspRI	CASTG	5 cut(s)	156, 522, 818, 823, 839
Van91I	CCANNNNNTGG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	455
VneI	GTGCAC	1 cut(s)	814
VpaK11BI	GGWCC	3 cut(s)	101, 444, 1064
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	3 cut(s)	323, 675, 712
XmiI	GTMKAC	2 cut(s)	806, 1037
XspI	CTAG	3 cut(s)	407, 741, 846
ZrmI	AGTACT	1 cut(s)	745
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.