Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016263

Physical Location & Seq

Genomic Coordinates Forward (+)

52855239 .. 52857683

Gene Structure 2445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAAGCTGAAAGTAGGCAATTCAGTGGAGGTGTTGAGAAAAGAAAATGATCTGTGTATGTCCTGGTTTTCAGGTAAAGTAATGGCCGTTGATGGCGATGACTTCATTGTGAGGTATAAGTCACTTATAGACCGCAAAGAGGTGATGGCGGTGGAGAGGGTGTACAGAAAGGCCATTAGGCCTCGGCCTCCACATGCAAAGAAAGAGAAGGGATGGATTGTTGGTGATATGGTTGAAGTGTTTGATACGAAGTGTTGGAAGGTTGGGAAGGTAGCCAAGGTAGGGAAGAACAATCGAGTTGTCATTAGATTTCTCGGGTCCATTCAGCTTAAGGAATTTGATGAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAATAAGTGGTCAGTGATTGAGAAGGTTCAAAAGAATAATCAGATTAAGATTCGGAGCCATAGATGGGATCATTCAAAAGTTCAACTAGAGGCAAGTTGTGCAGAACCTTTCTCAAAAGAGAAGAGAATTAGTTGCAAGAGAAGAAGATCAAACATTAATGTGGGAGCATGTGACAGGCCATCAATGAGTAACCATTGGCTGTACATGCAGGTAGATAAAACATCAAGGAACAACTCTAGTACTGATATAAATCCCAAAATGAGAAAGGCAACCAGCTATGGGATGCATAGATCTTTTGAGTCTACTCAGTGCACTGAGGATAGTTACCCGTGTTCTGTGGCTAGTTGTAGTATGAATGAGCTTTCCGGCTCTCAAAATGGGAGTTCTGCAGAACTTGGAGAAGATATTTGTGATAGTTCTGACGCAGAGTCATCATTTCCATCTTCGGCTGGGAAAAAACTCTCAGCTCCATTACCAGAGCCTTATGTGCTCGATGTTGACATCCACAAATTAGAGCTTCACGCATACAAGTCGACTTTGCATGTGCTCTATGCTTCAGGTCCCTTGAGTTGGGAGCAGGAATCCCTCCTAACGAATCTTCGTCTGTCCCTTCATATAACAAATGAGGAACATTTGCTGCATGTGAGGCACCTCTTATCTTCTCAGGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet ENT

Protein Analysis

350

Amino Acids

39.96

Weight (kDa)

9.1

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	6 - 64	5.4e-12	Agenet domain
ENT	PF03735	293 - 338	3.3e-12	ENT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22820
rosa_chinensis	RchiOBHm_Chr6g0289741
rosa_laevigata	RLG00000012270
rosa_multiflora	Rmu_sc0005640.1_g000017
rosa_roxburghii	Rroxscaffold_7G00177600 Rroxscaffold_7G00178100
rosa_rugosa	Rorug06G0206100 Rorug06G0206200 Rorug06G0206300 Rorug06G0206300
rosa_samantha	Rh6AG318100 Rh6BG325400 Rh6CG331000 Rh6DG316700
rosa_wichuraiana	Rw6G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	1026
AccI	GTMKAC	2 cut(s)	680, 911
AciI	CCGC	2 cut(s)	133, 149
AclWI	GGATC	3 cut(s)	365, 381, 453
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	3 cut(s)	164, 581, 619
AfiI	CCNNNNNNNGG	5 cut(s)	139, 282, 442, 657, 948
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	236, 407, 453, 461
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	7 cut(s)	7, 328, 368, 654, 739, 845, 895
AluI	AGCT	7 cut(s)	7, 328, 368, 654, 739, 845, 895
Alw21I	GWGCWC	3 cut(s)	692, 870, 927
Alw44I	GTGCAC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	365, 381, 453
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	5 cut(s)	84, 171, 179, 185, 554
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	1015
ApoI	RAATTY	1 cut(s)	335
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	318, 938
AsuHPI	GGTGA	2 cut(s)	154, 236
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	318, 938
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	1026
Bbv12I	GWGCWC	3 cut(s)	692, 870, 927
BbvI	GCAGC	1 cut(s)	1002
BccI	CCATC	6 cut(s)	86, 139, 207, 435, 565, 826
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	891, 925
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	3 cut(s)	464, 615, 720
BfmI	CTRYAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	1 cut(s)	1016
BlsI	GCNGC	1 cut(s)	1017
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	318, 938
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	318, 938
BmiI	GGNNCC	4 cut(s)	319, 434, 940, 1028
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	964
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	182, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 282, 442, 657, 948
Bse21I	CCTNAGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	182, 276
BseGI	GGATG	3 cut(s)	218, 666, 879
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	5 cut(s)	139, 282, 442, 657, 948
BseMII	CTCAG	4 cut(s)	344, 684, 698, 855
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	1002
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	5 cut(s)	86, 173, 181, 187, 556
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	3 cut(s)	692, 870, 927
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	744
BslFI	GGGAC	2 cut(s)	924, 970
BslI	CCNNNNNNNGG	5 cut(s)	139, 282, 442, 657, 948
BsmFI	GGGAC	2 cut(s)	924, 970
BsnI	GGCC	5 cut(s)	86, 173, 181, 187, 556
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	692, 870, 927
Bsp1407I	TGTACA	2 cut(s)	162, 579
Bsp143I	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
BspACI	CCGC	2 cut(s)	133, 149
BspANI	GGCC	5 cut(s)	86, 173, 181, 187, 556
BspCNI	CTCAG	4 cut(s)	345, 685, 697, 854
BspLI	GGNNCC	4 cut(s)	319, 434, 940, 1028
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	3 cut(s)	365, 381, 453
BspT107I	GGYRCC	1 cut(s)	1026
BspTI	CTTAAG	1 cut(s)	329
BsrGI	TGTACA	2 cut(s)	162, 579
BssECI	CCNNGG	2 cut(s)	182, 276
BssMI	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	494
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	2 cut(s)	162, 579
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	5 cut(s)	353, 684, 693, 841, 1041
BstF5I	GGATG	3 cut(s)	218, 666, 879
BstKTI	GATC	6 cut(s)	52, 360, 376, 448, 527, 671
BstMBI	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 583, 865, 1024
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	5 cut(s)	197, 549, 586, 923, 1022
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	1 cut(s)	1002
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	5 cut(s)	86, 173, 181, 187, 556
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	218, 666, 879
BtsIMutI	CAGTG	4 cut(s)	30, 396, 690, 692
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	318, 938
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	163, 580, 618
CviAII	CATG	5 cut(s)	194, 546, 583, 920, 1019
CviQI	GTAC	3 cut(s)	163, 580, 618
DdeI	CTNAG	5 cut(s)	353, 684, 693, 841, 1041
DpnI	GATC	6 cut(s)	51, 359, 375, 447, 526, 670
DpnII	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
DriI	GACNNNNNGTC	1 cut(s)	805
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	494
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	318, 938
Eco57I	CTGAAG	1 cut(s)	918
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	5 cut(s)	197, 549, 586, 923, 1022
FaqI	GGGAC	2 cut(s)	924, 970
FatI	CATG	5 cut(s)	193, 545, 582, 919, 1018
FblI	GTMKAC	2 cut(s)	680, 911
Fnu4HI	GCNGC	1 cut(s)	1016
FokI	GGATG	3 cut(s)	225, 673, 866
Fsp4HI	GCNGC	1 cut(s)	1016
FspBI	CTAG	3 cut(s)	464, 615, 720
GluI	GCNGC	1 cut(s)	1016
GsaI	CCCAGC	1 cut(s)	831
HaeIII	GGCC	5 cut(s)	86, 173, 181, 187, 556
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	5 cut(s)	197, 549, 586, 923, 1022
HincII	GTYRAC	2 cut(s)	877, 912
HindII	GTYRAC	2 cut(s)	877, 912
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	5 cut(s)	427, 677, 806, 959, 973
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	2 cut(s)	154, 236
Hpy166II	GTNNAC	5 cut(s)	163, 681, 690, 877, 912
Hpy188I	TCNGA	4 cut(s)	378, 420, 432, 799
Hpy8I	GTNNAC	5 cut(s)	163, 681, 690, 877, 912
HpyAV	CCTTC	5 cut(s)	202, 253, 262, 394, 998
HpyCH4V	TGCA	9 cut(s)	197, 479, 513, 586, 664, 690, 767, 919, 1018
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 583, 865, 1024
HpyF3I	CTNAG	5 cut(s)	353, 684, 693, 841, 1041
Hsp92II	CATG	5 cut(s)	197, 549, 586, 923, 1022
Kzo9I	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
LmnI	GCTCC	4 cut(s)	432, 542, 850, 952
Lsp1109I	GCAGC	1 cut(s)	1002
LweI	GCATC	1 cut(s)	651
MaeI	CTAG	3 cut(s)	464, 615, 720
MaeIII	GTNAC	5 cut(s)	120, 347, 548, 566, 701
MalI	GATC	6 cut(s)	51, 359, 375, 447, 526, 670
MboI	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
MboII	GAAGA	8 cut(s)	298, 511, 531, 534, 791, 813, 968, 1029
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	3 cut(s)	692, 870, 927
MluCI	AATT	4 cut(s)	19, 335, 504, 887
MlyI	GAGTC	2 cut(s)	686, 815
MmeI	TCCRAC	1 cut(s)	236
Mph1103I	ATGCAT	1 cut(s)	666
MseI	TTAA	3 cut(s)	330, 423, 534
MslI	CAYNNNNRTG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	476, 583, 865, 1024
NdeII	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
NlaIII	CATG	5 cut(s)	197, 549, 586, 923, 1022
NlaIV	GGNNCC	4 cut(s)	319, 434, 940, 1028
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	120, 548
NsiI	ATGCAT	1 cut(s)	666
NspI	RCATGY	5 cut(s)	197, 549, 586, 923, 1022
PceI	AGGCCT	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	427, 959, 973
PkrI	GCNGC	1 cut(s)	1017
PleI	GAGTC	2 cut(s)	685, 814
PpsI	GAGTC	2 cut(s)	685, 814
PpuMI	RGGWCCY	1 cut(s)	938
PshBI	ATTAAT	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	938
Psp6I	CCWGG	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	4 cut(s)	319, 434, 940, 1028
PspPI	GGNCC	2 cut(s)	318, 938
PspPPI	RGGWCCY	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	668
RsaI	GTAC	3 cut(s)	164, 581, 619
RsaNI	GTAC	3 cut(s)	163, 580, 618
RseI	CAYNNNNRTG	1 cut(s)	536
SalI	GTCGAC	1 cut(s)	910
SaqAI	TTAA	3 cut(s)	330, 423, 534
SatI	GCNGC	1 cut(s)	1016
Sau3AI	GATC	6 cut(s)	49, 357, 373, 445, 524, 668
Sau96I	GGNCC	2 cut(s)	318, 938
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	2 cut(s)	686, 815
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	3 cut(s)	692, 870, 927
SfaNI	GCATC	1 cut(s)	651
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	318, 938
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	329, 943
SmoI	CTYRAG	2 cut(s)	329, 943
Sse9I	AATT	4 cut(s)	19, 335, 504, 887
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	133, 149
SspMI	CTAG	3 cut(s)	464, 615, 720
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	276
TaqI	TCGA	3 cut(s)	295, 870, 911
TasI	AATT	4 cut(s)	19, 335, 504, 887
TatI	WGTACW	3 cut(s)	162, 579, 617
TfiI	GAWTC	3 cut(s)	427, 959, 973
Tru1I	TTAA	3 cut(s)	330, 423, 534
Tru9I	TTAA	3 cut(s)	330, 423, 534
TscAI	CASTG	4 cut(s)	30, 396, 692, 697
TseFI	GTSAC	2 cut(s)	120, 548
TseI	GCWGC	1 cut(s)	1015
Tsp45I	GTSAC	2 cut(s)	120, 548
TspDTI	ATGAA	5 cut(s)	17, 94, 357, 746, 980
TspRI	CASTG	4 cut(s)	30, 396, 692, 697
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	688
VpaK11BI	GGWCC	2 cut(s)	318, 938
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	5 cut(s)	197, 549, 586, 923, 1022
XmiI	GTMKAC	2 cut(s)	680, 911
XspI	CTAG	3 cut(s)	464, 615, 720
ZrmI	AGTACT	1 cut(s)	619
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.