Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Reverse (-)

18920189 .. 18924051

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGTGTGTGTATATATCTCTCTTTGGAATGTTGATCCCAAAACCCACTTCTTCCCCTCATCAAATTTCAAACCCATTTTTTCCTGTGTCACCAAACCCAAGAAAGAACCCACCTTTAATGGAAGAAACACTCCCAATGCTAAGCTCTCGCCGGCCGGAGCAGACTCCGGTGGGGCTTGACAACCTCCCCAAAAGCCCAAGAGTCCCAATGGAGTTTCTCTCAAGGTCTTGGAGTGCTTCTGCCCTTGAAGTTTCCAAAGCTCTGTCTCAAGCCCCTCCTCTGCCTCCATGCATGAACTCCAAGTCCACCCTCAGCTCTTCTTCTTGCACCACCACCACAACAGCTTCTATACCCGAAGATGTCGCCGGAGAATCTGAAGAAGTGACTCCAGTTCTGTCCGGGAATCAGTTCTACTTTGCTACCTCTGCTACTTCTCAGCTAGTCCTTGACCGCATTATGTCACAGTCCATGAGAGAGGAAGTGTCACCATTAACATCAGGGAGGCTTTCACACAGCTCTGGACCATTGAACGCCGGAGGCTCATTTGAGACAGACAGCCCTCCGGTTTCTCCATCGGAGGAGTTCGACGACGTCGTTAAGTTCTTTCGCAACCACAACAGCATAAACCAGTTGTTCAACAACGGCAGCCGAAGCAGCGCTGCGAATGTCAGTAGTACCCCTGCTACCGGGGGAGCTAAGACAGTTGGGAGGTGGTTGAAGGATCGAAAGGAGAAGAAAAAGGAGGAGACGAGAGTCCACAATGCCCAAGTTCACGCTGCAGTTTCAGTGGCCGCAGTGGCTGCAGCTGTAGCTGCCATTGCTGCAGCCACAGCCGCTTCGTCTTCAACCTCATCAAGAAAGAACAACGAACAAGCGGCCAAGACAGACATGGCTGTGGCATCTGCTGCTACATTGGTAGCTGCACAGTGTGCTGAGGCTGCAGAGGCTATGGGAGCTGAGCATGACCATCTTACATCTATGGTTAGCTCTGCAGTCAATGTTCGCTCTCATGATGATATTACCACTCTCACTGCTGCTGCTGCAACAGCTTTAAGAGGAGCAGCAACACTCAAGGCAAGGGCAATGAAGGAGGTCTGGAACATAGCAGCGGTGATACCAGTGGAAAAAGGAATGGGAATTGGGGTCTGTGGTAAAGGCAACAACAACAACAGCAATAGCAGCTTTAGTAGTAGTGAAGAGCTTGTCCCTGCTCCTAACACTTTTCTTGGGGCCTCTAATCAAGACCTGCTTGCTAGGGGAACTGAACTTCTCAAACGCACCCGAAAAGGTGATCTTCACTGGAAAGTAGTTTCTGTTTATATTCATCGAACAGGCCAGGTGATGCTGAAAATGAAGAGCAAACATGTTGCAGGAACATTCACCAAAAAGAAAAAGAATGTTGTTTTGGAGGTGTGCAAGAACATGCCGGCATGGCCCGGAAGGCACTTGTTCGATGGTGGAGAGCAGCGTCGTTACTTTGGGCTGAAAACAGAATCGCGAGGAGTCGTGGAGTTTGAGTGCAAGAATCAGAGGGAACATGACGTCTGGACTCATGGAGTTTCAAGGCTGCTCTCTATTGTAGCCGAGAGAAAGAACGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

535

Amino Acids

57.28

Weight (kDa)

9.32

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	63 - 377	3e-110	Auxin canalisation
PH_2	PF08458	422 - 527	1.8e-44	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	594, 1545
Acc36I	ACCTGC	1 cut(s)	1254
AccII	CGCG	1 cut(s)	1498
AciI	CCGC	5 cut(s)	451, 792, 834, 875, 1109
AclWI	GGATC	2 cut(s)	28, 729
AcoI	YGGCCR	3 cut(s)	152, 789, 876
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	591, 1542
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	1 cut(s)	676
AfeI	AGCGCT	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	1363
AgsI	TTSAA	7 cut(s)	69, 248, 529, 637, 718, 846, 1563
AjnI	CCWGG	1 cut(s)	1335
AjuI	GAANNNNNNNTTGG	4 cut(s)	31, 63, 1388, 1420
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
Alw26I	GTCTC	3 cut(s)	270, 542, 740
AlwI	GGATC	2 cut(s)	28, 729
AlwNI	CAGNNNCTG	1 cut(s)	800
Aor51HI	AGCGCT	1 cut(s)	658
AoxI	GGCC	6 cut(s)	152, 789, 876, 1230, 1333, 1433
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	3 cut(s)	521, 1230, 1434
AsuC2I	CCSGG	3 cut(s)	400, 688, 1437
AsuHPI	GGTGA	6 cut(s)	81, 477, 1123, 1301, 1351, 1372
AvaII	GGWCC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	834
BbvCI	CCTCAGC	2 cut(s)	311, 933
BccI	CCATC	3 cut(s)	580, 975, 1448
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	1337
BcnI	CCSGG	3 cut(s)	400, 688, 1437
BcoDI	GTCTC	3 cut(s)	270, 542, 740
BfaI	CTAG	2 cut(s)	440, 1254
BfmI	CTRYAG	6 cut(s)	777, 801, 807, 822, 939, 990
BfoI	RGCGCY	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	1254
BglI	GCCNNNNNGGC	3 cut(s)	797, 1432, 1441
BlpI	GCTNAGC	2 cut(s)	140, 957
Bme1390I	CCNGG	4 cut(s)	400, 688, 1337, 1437
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	521, 1230, 1434
BmiI	GGNNCC	1 cut(s)	1231
BmrFI	CCNGG	4 cut(s)	400, 688, 1337, 1437
BmsI	GCATC	2 cut(s)	908, 1332
BoxI	GACNNNNGTC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	2 cut(s)	311, 933
Bpu1102I	GCTNAGC	2 cut(s)	140, 957
BpuEI	CTTGAG	3 cut(s)	205, 252, 1055
BpuMI	CCSGG	3 cut(s)	400, 688, 1437
BsaHI	GRCGYC	2 cut(s)	591, 1542
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	2 cut(s)	166, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	1502, 1532
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse118I	RCCGGY	2 cut(s)	150, 1426
Bse1I	ACTGG	4 cut(s)	389, 628, 1118, 1304
Bse3DI	GCAATG	2 cut(s)	816, 1089
BseBI	CCWGG	1 cut(s)	1337
BseDI	CCNNGG	1 cut(s)	687
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMI	GCAATG	2 cut(s)	816, 1089
BseMII	CTCAG	4 cut(s)	325, 449, 924, 948
BseNI	ACTGG	4 cut(s)	389, 628, 1118, 1304
BseRI	GAGGAG	5 cut(s)	267, 593, 758, 1071, 1515
BseX3I	CGGCCG	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	906
Bsh1236I	CGCG	1 cut(s)	1498
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	6 cut(s)	154, 791, 878, 1232, 1335, 1435
BsiEI	CGRYCG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	188, 1190
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	3 cut(s)	270, 542, 740
BsmBI	CGTCTC	1 cut(s)	740
BsmFI	GGGAC	2 cut(s)	188, 1190
BsnI	GGCC	6 cut(s)	154, 791, 878, 1232, 1335, 1435
Bsp143I	GATC	3 cut(s)	33, 721, 1291
Bsp1720I	GCTNAGC	2 cut(s)	140, 957
Bsp68I	TCGCGA	1 cut(s)	1498
BspACI	CCGC	5 cut(s)	451, 792, 834, 875, 1109
BspANI	GGCC	6 cut(s)	154, 791, 878, 1232, 1335, 1435
BspCNI	CTCAG	4 cut(s)	324, 448, 925, 949
BspFNI	CGCG	1 cut(s)	1498
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	1 cut(s)	1231
BspMAI	CTGCAG	5 cut(s)	781, 805, 826, 943, 994
BspMI	ACCTGC	1 cut(s)	1254
BspPI	GGATC	2 cut(s)	28, 729
BspQI	GCTCTTC	3 cut(s)	322, 1191, 1349
BsrDI	GCAATG	2 cut(s)	816, 1089
BsrFI	RCCGGY	2 cut(s)	150, 1426
BsrI	ACTGG	4 cut(s)	389, 628, 1118, 1304
BssAI	RCCGGY	2 cut(s)	150, 1426
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	3 cut(s)	33, 721, 1291
BssNI	GRCGYC	2 cut(s)	591, 1542
Bst2UI	CCWGG	1 cut(s)	1337
Bst4CI	ACNGT	3 cut(s)	465, 703, 927
Bst6I	CTCTTC	3 cut(s)	322, 1191, 1349
BstACI	GRCGYC	2 cut(s)	591, 1542
BstAPI	GCANNNNNTGC	3 cut(s)	800, 905, 929
BstC8I	GCNNGC	3 cut(s)	152, 1251, 1428
BstDEI	CTNAG	6 cut(s)	140, 311, 435, 696, 933, 957
BstFNI	CGCG	1 cut(s)	1498
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	3 cut(s)	36, 724, 1294
BstMAI	GTCTC	3 cut(s)	270, 542, 740
BstMBI	GATC	3 cut(s)	33, 721, 1291
BstMCI	CGRYCG	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	1337
BstNSI	RCATGY	2 cut(s)	1367, 1426
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	4 cut(s)	398, 686, 1335, 1435
BstSFI	CTRYAG	6 cut(s)	777, 801, 807, 822, 939, 990
BstUI	CGCG	1 cut(s)	1498
BstV2I	GAAGAC	1 cut(s)	834
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	6 cut(s)	154, 791, 878, 1232, 1335, 1435
BtsI	GCAGTG	2 cut(s)	801, 1029
BtsIMutI	CAGTG	6 cut(s)	792, 801, 932, 1029, 1125, 1297
BtuMI	TCGCGA	1 cut(s)	1498
BveI	ACCTGC	1 cut(s)	1254
Cac8I	GCNNGC	3 cut(s)	152, 1251, 1428
CaiI	CAGNNNCTG	1 cut(s)	800
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	1 cut(s)	659
Cfr10I	RCCGGY	2 cut(s)	150, 1426
Cfr13I	GGNCC	3 cut(s)	521, 1230, 1434
CseI	GACGC	1 cut(s)	1457
Csp6I	GTAC	1 cut(s)	675
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	6 cut(s)	140, 311, 435, 696, 933, 957
DpnI	GATC	3 cut(s)	35, 723, 1293
DpnII	GATC	3 cut(s)	33, 721, 1291
DraIII	CACNNNGTG	1 cut(s)	929
EaeI	YGGCCR	3 cut(s)	152, 789, 876
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	3 cut(s)	322, 1191, 1349
EarI	CTCTTC	3 cut(s)	322, 1191, 1349
EclXI	CGGCCG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	521
Eco47III	AGCGCT	1 cut(s)	658
Eco52I	CGGCCG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	1230
EcoRII	CCWGG	1 cut(s)	1335
EcoT22I	ATGCAT	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	740
FalI	AAGNNNNNCTT	4 cut(s)	1233, 1265, 1278, 1310
FaqI	GGGAC	2 cut(s)	188, 1190
FspBI	CTAG	2 cut(s)	440, 1254
GlaI	GCGC	1 cut(s)	658
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	6 cut(s)	154, 791, 878, 1232, 1335, 1435
HgaI	GACGC	1 cut(s)	1457
HhaI	GCGC	1 cut(s)	659
Hin1I	GRCGYC	2 cut(s)	591, 1542
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HphI	GGTGA	6 cut(s)	81, 477, 1123, 1301, 1351, 1372
Hpy166II	GTNNAC	3 cut(s)	306, 757, 772
Hpy188I	TCNGA	3 cut(s)	376, 577, 1530
Hpy188III	TCNNGA	7 cut(s)	519, 855, 1010, 1096, 1241, 1497, 1546
Hpy8I	GTNNAC	3 cut(s)	306, 757, 772
Hpy99I	CGWCG	4 cut(s)	590, 593, 596, 1473
HpyAV	CCTTC	3 cut(s)	712, 1081, 1434
HpyCH4III	ACNGT	3 cut(s)	465, 703, 927
HpyCH4IV	ACGT	3 cut(s)	591, 1542, 1596
HpyF3I	CTNAG	6 cut(s)	140, 311, 435, 696, 933, 957
HpySE526I	ACGT	3 cut(s)	591, 1542, 1596
Hsp92I	GRCGYC	2 cut(s)	591, 1542
HspAI	GCGC	1 cut(s)	657
KroI	GCCGGC	2 cut(s)	150, 1426
KroNI	GCCGGC	2 cut(s)	152, 1428
Kzo9I	GATC	3 cut(s)	33, 721, 1291
LguI	GCTCTTC	3 cut(s)	322, 1191, 1349
LmnI	GCTCC	5 cut(s)	157, 692, 953, 1058, 1216
LweI	GCATC	2 cut(s)	908, 1332
MaeI	CTAG	2 cut(s)	440, 1254
MaeII	ACGT	3 cut(s)	591, 1542, 1596
MaeIII	GTNAC	5 cut(s)	87, 382, 459, 483, 1472
MalI	GATC	3 cut(s)	35, 723, 1293
MboI	GATC	3 cut(s)	33, 721, 1291
MluCI	AATT	2 cut(s)	63, 1137
MlyI	GAGTC	6 cut(s)	157, 210, 379, 762, 1512, 1543
Mph1103I	ATGCAT	1 cut(s)	293
MroNI	GCCGGC	2 cut(s)	150, 1426
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	5 cut(s)	116, 491, 597, 1052, 1603
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	2 cut(s)	806, 1109
MspR9I	CCNGG	4 cut(s)	400, 688, 1337, 1437
MvaI	CCWGG	1 cut(s)	1337
MvnI	CGCG	1 cut(s)	1498
NaeI	GCCGGC	2 cut(s)	152, 1428
NciI	CCSGG	3 cut(s)	400, 688, 1437
NdeII	GATC	3 cut(s)	33, 721, 1291
NgoMIV	GCCGGC	2 cut(s)	150, 1426
NlaIV	GGNNCC	1 cut(s)	1231
NmuCI	GTSAC	4 cut(s)	87, 382, 459, 483
NruI	TCGCGA	1 cut(s)	1498
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	2 cut(s)	1367, 1426
PagI	TCATGA	1 cut(s)	1009
PciI	ACATGT	1 cut(s)	1363
PciSI	GCTCTTC	3 cut(s)	322, 1191, 1349
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PdiI	GCCGGC	2 cut(s)	152, 1428
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	371, 403, 1493, 1525
PflFI	GACNNNGTC	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	398
PleI	GAGTC	6 cut(s)	157, 209, 379, 761, 1511, 1543
PpsI	GAGTC	6 cut(s)	157, 209, 379, 761, 1511, 1543
PscI	ACATGT	1 cut(s)	1363
PshAI	GACNNNNGTC	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	1335
PspGI	CCWGG	1 cut(s)	1335
PspN4I	GGNNCC	1 cut(s)	1231
PspPI	GGNCC	3 cut(s)	521, 1230, 1434
PstI	CTGCAG	5 cut(s)	781, 805, 826, 943, 994
PstNI	CAGNNNCTG	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	806
RruI	TCGCGA	1 cut(s)	1498
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
RseI	CAYNNNNRTG	1 cut(s)	893
SapI	GCTCTTC	3 cut(s)	322, 1191, 1349
SaqAI	TTAA	5 cut(s)	116, 491, 597, 1052, 1603
Sau3AI	GATC	3 cut(s)	33, 721, 1291
Sau96I	GGNCC	3 cut(s)	521, 1230, 1434
SchI	GAGTC	6 cut(s)	157, 210, 379, 762, 1512, 1543
ScrFI	CCNGG	4 cut(s)	400, 688, 1337, 1437
SfaNI	GCATC	2 cut(s)	908, 1332
SfcI	CTRYAG	6 cut(s)	777, 801, 807, 822, 939, 990
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	3 cut(s)	220, 267, 1070
SmoI	CTYRAG	3 cut(s)	220, 267, 1070
Sse9I	AATT	2 cut(s)	63, 1137
SsiI	CCGC	5 cut(s)	451, 792, 834, 875, 1109
SspMI	CTAG	2 cut(s)	440, 1254
StyD4I	CCNGG	4 cut(s)	398, 686, 1335, 1435
TaaI	ACNGT	3 cut(s)	465, 703, 927
TaiI	ACGT	3 cut(s)	594, 1545, 1599
TaqI	TCGA	4 cut(s)	585, 724, 1327, 1452
TasI	AATT	2 cut(s)	63, 1137
TauI	GCSGC	3 cut(s)	794, 836, 878
TfiI	GAWTC	4 cut(s)	371, 403, 1493, 1525
Tru1I	TTAA	5 cut(s)	116, 491, 597, 1052, 1603
Tru9I	TTAA	5 cut(s)	116, 491, 597, 1052, 1603
TscAI	CASTG	6 cut(s)	792, 801, 932, 1036, 1125, 1304
TseFI	GTSAC	4 cut(s)	87, 382, 459, 483
Tsp45I	GTSAC	4 cut(s)	87, 382, 459, 483
TspDTI	ATGAA	4 cut(s)	308, 1100, 1313, 1367
TspRI	CASTG	6 cut(s)	792, 801, 932, 1036, 1125, 1304
Tth111I	GACNNNGTC	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	2 cut(s)	1367, 1426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	2 cut(s)	440, 1254
ZraI	GACGTC	2 cut(s)	592, 1543
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.