Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Reverse (-)

52297388 .. 52301219

Gene Structure 3832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG334400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAAGAAACACTCCCAATGTTGAGCTCTCGCCGGCCGGAGCAGACTCCGGTGGGTCTTGACAACCTCCCCAAAAGCCCAAGAGTCCCAATGGAGTTCCTCTCAAGGTCTTGGAGTGCTTCTGCTCTTGAAGTCTCCAAAGCTCTGTCTCAACCACCCCCTGTTCCTCAATGCATGAACTCTAAGTCCACCCACAACTCTTCTTCTTGCACCACCACCACAGCAGCTTCTATACCCGAAGATGTAGCCGGAGAATCTGAAGAGACTCCAGTTCTGTCTGGGAATCAATTCTACTTTGCTACCTCTGCTACTTCTCAGTTGGTCCTGGACCGCATTATGTCACAGTCCATGAGAGAGGAAGTGTCACCATTAACATCAGGGAGGCTTTCACACAGCTCTGGACCATTGAACGCCGGAGGCTCATTTGAGACTGATAGCCCTCCTGTTTCTCCATCGGAGGAGTTCGACGACGTCGTTAAGTTCTTCCGCAACCACAACAGCATAAACCAGCTGTTCAACAACGGCAGTCGGAGCAGCGCTGTAAATGTCAGTAGTACCCCTGCTACCGGGGGAGCCAAGACAGTTGGGAGATGGTTGAAGGATCGAAAAGAGAAGAAAAAGGAGGAGACTAGAGTCCACAATGCTCAAGTCCACGCAGCCGTTTCAGTTGCCGCAGTGGCTGCTGCTGTAGCTGCCATTGCGGCAGCCACAGCCGCTTCTTCTTCAACCTCATCAAGAAAGAACAACGAACAAGCGGCCAAGACGGATATGGCTGTGGCATCTGCTGCTACATTGGTAGCTGCACAATGTGCTGAAGCTGCAGAGGCGATGGGAGCTGAGCATGACCATCTTACTTCTGTGGTTAGCTCTGCAGTCAATGTTCGCTCTCATGATGATATTACCACTCTCACTGCTGCCGCTGCCACAGCTTTAAGAGGTGCAGCGACTCTCAAGGCAAGGGCAATGAAGGAGGTGTGGAACATAGCAGCAGTGATACCAGTGGAAAAAGGAATGGGAATCGGGGTCTGTGGTAAAGGCAATAACAACAGCAATGGCAGCTTTAGTAGCAGTGAAGAGCTTGTCCCTGCTCCTAACACTTTTCTTGGGGCCTCTAACCAAGACCTGCTTGCTAGGGGAACTGAACTCCTCAAACGCACCCGAAAAGGTGATCTTCACTGGAAAGTAGTATCTGTTTATATTCATCGAACAGGCCAGGTAAGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

408

Amino Acids

42.9

Weight (kDa)

7.75

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	24 - 337	9.6e-111	Auxin canalisation
PH_2	PF08458	381 - 406	5.8e-06	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	1131
AciI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
AclWI	GGATC	2 cut(s)	609, 1215
AcoI	YGGCCR	2 cut(s)	35, 756
AcuI	CTGAAG	2 cut(s)	279, 834
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	1 cut(s)	556
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	566
AgsI	TTSAA	5 cut(s)	131, 409, 517, 598, 726
AjnI	CCWGG	2 cut(s)	324, 1212
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	5 cut(s)	139, 153, 257, 422, 620
AlwI	GGATC	2 cut(s)	609, 1215
AlwNI	CAGNNNCTG	1 cut(s)	680
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	4 cut(s)	35, 756, 1107, 1210
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	4 cut(s)	322, 328, 401, 1107
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	357, 1178
AvaII	GGWCC	3 cut(s)	322, 328, 401
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	4 cut(s)	460, 585, 823, 855
BceAI	ACGGC	2 cut(s)	538, 644
BciT130I	CCWGG	2 cut(s)	326, 1214
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BfaI	CTAG	2 cut(s)	630, 1131
BfmI	CTRYAG	3 cut(s)	687, 819, 870
BfoI	RGCGCY	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	1131
BglI	GCCNNNNNGGC	2 cut(s)	677, 701
BlpI	GCTNAGC	1 cut(s)	837
Bme1390I	CCNGG	3 cut(s)	326, 568, 1214
Bme18I	GGWCC	3 cut(s)	322, 328, 401
BmgT120I	GGNCC	4 cut(s)	322, 328, 401, 1107
BmiI	GGNNCC	2 cut(s)	574, 1108
BmrFI	CCNGG	3 cut(s)	326, 568, 1214
BmsI	GCATC	1 cut(s)	788
BoxI	GACNNNNGTC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	3 cut(s)	88, 630, 935
BpuMI	CCSGG	1 cut(s)	568
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	33
Bse1I	ACTGG	3 cut(s)	269, 998, 1181
Bse3DI	GCAATG	3 cut(s)	696, 969, 1057
BseBI	CCWGG	2 cut(s)	326, 1214
BseDI	CCNNGG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	3 cut(s)	696, 969, 1057
BseMII	CTCAG	2 cut(s)	329, 828
BseNI	ACTGG	3 cut(s)	269, 998, 1181
BseRI	GAGGAG	3 cut(s)	473, 638, 1136
BseX3I	CGGCCG	1 cut(s)	35
BsgI	GTGCAG	2 cut(s)	786, 960
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	4 cut(s)	37, 758, 1109, 1212
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	34, 38, 50, 249, 414, 567
BslFI	GGGAC	2 cut(s)	71, 1067
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BsmFI	GGGAC	2 cut(s)	71, 1067
BsnI	GGCC	4 cut(s)	37, 758, 1109, 1212
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	601, 1168, 1220
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
BspANI	GGCC	4 cut(s)	37, 758, 1109, 1212
BspCNI	CTCAG	2 cut(s)	328, 829
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	574, 1108
BspMAI	CTGCAG	2 cut(s)	823, 874
BspMI	ACCTGC	1 cut(s)	1131
BspPI	GGATC	2 cut(s)	609, 1215
BspQI	GCTCTTC	1 cut(s)	1068
BsrDI	GCAATG	3 cut(s)	696, 969, 1057
BsrFI	RCCGGY	1 cut(s)	33
BsrI	ACTGG	3 cut(s)	269, 998, 1181
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	3 cut(s)	601, 1168, 1220
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	326, 1214
Bst4CI	ACNGT	2 cut(s)	345, 583
Bst6I	CTCTTC	3 cut(s)	205, 255, 1068
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	3 cut(s)	680, 785, 809
BstC8I	GCNNGC	2 cut(s)	35, 1128
BstDEI	CTNAG	3 cut(s)	183, 315, 837
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	3 cut(s)	604, 1171, 1223
BstMAI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BstMBI	GATC	3 cut(s)	601, 1168, 1220
BstMCI	CGRYCG	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	326, 1214
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	3 cut(s)	324, 566, 1212
BstSFI	CTRYAG	3 cut(s)	687, 819, 870
BstX2I	RGATCY	1 cut(s)	1220
BstYI	RGATCY	1 cut(s)	1220
BstZI	CGGCCG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	37, 758, 1109, 1212
BtgZI	GCGATG	1 cut(s)	842
BtsI	GCAGTG	4 cut(s)	681, 909, 996, 1075
BtsIMutI	CAGTG	6 cut(s)	681, 909, 996, 1005, 1075, 1174
BveI	ACCTGC	1 cut(s)	1131
Cac8I	GCNNGC	2 cut(s)	35, 1128
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	4 cut(s)	322, 328, 401, 1107
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	4 cut(s)	175, 349, 842, 890
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	3 cut(s)	183, 315, 837
DpnI	GATC	3 cut(s)	603, 1170, 1222
DpnII	GATC	3 cut(s)	601, 1168, 1220
DraIII	CACNNNGTG	1 cut(s)	809
EaeI	YGGCCR	2 cut(s)	35, 756
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	205, 255, 1068
EarI	CTCTTC	3 cut(s)	205, 255, 1068
Ecl136II	GAGCTC	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	3 cut(s)	322, 328, 401
Eco47III	AGCGCT	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	279, 834
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	1107
EcoRII	CCWGG	2 cut(s)	324, 1212
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	4 cut(s)	178, 352, 845, 893
FalI	AAGNNNNNCTT	4 cut(s)	1110, 1142, 1155, 1187
FaqI	GGGAC	2 cut(s)	71, 1067
FatI	CATG	4 cut(s)	174, 348, 841, 889
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	630, 1131
GlaI	GCGC	1 cut(s)	538
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	4 cut(s)	37, 758, 1109, 1212
HapII	CCGG	6 cut(s)	34, 38, 50, 249, 414, 567
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	178, 352, 845, 893
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	8 cut(s)	46, 84, 254, 265, 283, 633, 946, 1017
HpaII	CCGG	6 cut(s)	34, 38, 50, 249, 414, 567
HphI	GGTGA	2 cut(s)	357, 1178
Hpy166II	GTNNAC	3 cut(s)	189, 637, 652
Hpy188I	TCNGA	3 cut(s)	259, 457, 531
Hpy188III	TCNNGA	6 cut(s)	59, 128, 399, 735, 890, 1224
Hpy8I	GTNNAC	3 cut(s)	189, 637, 652
Hpy99I	CGWCG	3 cut(s)	470, 473, 476
HpyAV	CCTTC	2 cut(s)	592, 961
HpyCH4III	ACNGT	2 cut(s)	345, 583
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	6 cut(s)	174, 210, 803, 821, 872, 941
HpyF3I	CTNAG	3 cut(s)	183, 315, 837
HpySE526I	ACGT	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	178, 352, 845, 893
HspAI	GCGC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	33
KroNI	GCCGGC	1 cut(s)	35
Kzo9I	GATC	3 cut(s)	601, 1168, 1220
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	5 cut(s)	40, 531, 572, 833, 1093
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	2 cut(s)	630, 1131
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	339, 363
MalI	GATC	3 cut(s)	603, 1170, 1222
MboI	GATC	3 cut(s)	601, 1168, 1220
MflI	RGATCY	1 cut(s)	1220
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	5 cut(s)	40, 93, 259, 642, 940
MmeI	TCCRAC	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	3 cut(s)	371, 477, 932
MspA1I	CMGCKG	2 cut(s)	511, 920
MspI	CCGG	6 cut(s)	34, 38, 50, 249, 414, 567
MspR9I	CCNGG	3 cut(s)	326, 568, 1214
MvaI	CCWGG	2 cut(s)	326, 1214
NaeI	GCCGGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	601, 1168, 1220
NgoMIV	GCCGGC	1 cut(s)	33
NlaIII	CATG	4 cut(s)	178, 352, 845, 893
NlaIV	GGNNCC	2 cut(s)	574, 1108
NmuCI	GTSAC	2 cut(s)	339, 363
NsiI	ATGCAT	1 cut(s)	176
PagI	TCATGA	1 cut(s)	889
PciSI	GCTCTTC	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdiI	GCCGGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	254, 283, 1017
PflFI	GACNNNGTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	324
PleI	GAGTC	5 cut(s)	40, 92, 259, 641, 940
PpsI	GAGTC	5 cut(s)	40, 92, 259, 641, 940
PshAI	GACNNNNGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	324, 1212
PspGI	CCWGG	2 cut(s)	324, 1212
PspN4I	GGNNCC	2 cut(s)	574, 1108
PspPI	GGNCC	4 cut(s)	322, 328, 401, 1107
PstI	CTGCAG	2 cut(s)	823, 874
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	1220
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	1068
SaqAI	TTAA	3 cut(s)	371, 477, 932
Sau3AI	GATC	3 cut(s)	601, 1168, 1220
Sau96I	GGNCC	4 cut(s)	322, 328, 401, 1107
SchI	GAGTC	5 cut(s)	40, 93, 259, 642, 940
ScrFI	CCNGG	3 cut(s)	326, 568, 1214
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	788
SfcI	CTRYAG	3 cut(s)	687, 819, 870
SinI	GGWCC	3 cut(s)	322, 328, 401
SmlI	CTYRAG	3 cut(s)	103, 645, 950
SmoI	CTYRAG	3 cut(s)	103, 645, 950
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
SspMI	CTAG	2 cut(s)	630, 1131
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	324, 566, 1212
TaaI	ACNGT	2 cut(s)	345, 583
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	3 cut(s)	465, 604, 1204
TasI	AATT	1 cut(s)	287
TauI	GCSGC	5 cut(s)	674, 704, 716, 758, 920
TfiI	GAWTC	3 cut(s)	254, 283, 1017
Tru1I	TTAA	3 cut(s)	371, 477, 932
Tru9I	TTAA	3 cut(s)	371, 477, 932
TscAI	CASTG	6 cut(s)	681, 916, 996, 1005, 1075, 1181
TseFI	GTSAC	2 cut(s)	339, 363
Tsp45I	GTSAC	2 cut(s)	339, 363
TspDTI	ATGAA	3 cut(s)	191, 980, 1190
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	6 cut(s)	681, 916, 996, 1005, 1075, 1181
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	3 cut(s)	322, 328, 401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	2 cut(s)	630, 1131
ZraI	GACGTC	1 cut(s)	472
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.