Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342515.1

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Reverse (-)

77 .. 897

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342515.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgaaggaggtgtggaacatagcagcagtgataccagtggaaaaaggaatgggaatcggggtctgtggtaaaggcaataacaacagcaatggcagctttagtagcagtgaagagcttgttcctgctcctaacacttttcttggggcctctaaccaagacctgcttgctaggggaactgaactcctcaaacgcacccgaaaaggtgatcttcactggaaagtagtatctgtttatattcatcgaacaggccaggtgatgctgaaaatgaagagcaaacatgttgcaggaacattcaccaaaaagaaaaagaatgttgtgttggaagtgtgcaagaacatgccggcatggcctgggaggcacttgttcgagggtggagagcagcgccgttactttggactgaaaacagaatcgcgaggagtcgtggagtttgagtgcaagaatcagagggaacatgacgtctggactcatggagtttcgaggctgctctctattgtagccgagagaaagaacatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

172

Amino Acids

19.33

Weight (kDa)

9.89

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	168
AccII	CGCG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	249, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	2 cut(s)	96, 115
AluI	AGCT	2 cut(s)	96, 115
AoxI	GGCC	3 cut(s)	144, 247, 347
ApeKI	GCWGC	4 cut(s)	23, 93, 379, 481
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	215, 265, 286
BbvI	GCAGC	4 cut(s)	35, 105, 391, 468
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	251, 351
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	385
BfuAI	ACCTGC	1 cut(s)	168
BglI	GCCNNNNNGGC	2 cut(s)	346, 355
BisI	GCNGC	4 cut(s)	24, 94, 380, 482
BlsI	GCNGC	4 cut(s)	25, 95, 381, 483
Bme1390I	CCNGG	2 cut(s)	251, 351
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	251, 351
BmsI	GCATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	35, 218
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	251, 351
BseDI	CCNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	35, 218
BseRI	GAGGAG	2 cut(s)	173, 429
BseXI	GCAGC	4 cut(s)	35, 105, 391, 468
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	3 cut(s)	146, 249, 349
BsiSI	CCGG	1 cut(s)	341
BsnI	GGCC	3 cut(s)	146, 249, 349
Bsp143I	GATC	1 cut(s)	205
Bsp68I	TCGCGA	1 cut(s)	412
BspANI	GGCC	3 cut(s)	146, 249, 349
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	168
BspQI	GCTCTTC	2 cut(s)	105, 263
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	35, 218
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	251, 351
Bst6I	CTCTTC	2 cut(s)	105, 263
BstACI	GRCGYC	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	165, 342
BstFNI	CGCG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 102, 346, 355
BstNI	CCWGG	2 cut(s)	251, 351
BstNSI	RCATGY	3 cut(s)	281, 340, 514
BstSCI	CCNGG	2 cut(s)	249, 349
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	4 cut(s)	35, 105, 391, 468
BsuRI	GGCC	3 cut(s)	146, 249, 349
BtsI	GCAGTG	2 cut(s)	33, 112
BtsIMutI	CAGTG	4 cut(s)	33, 42, 112, 211
BtuMI	TCGCGA	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	165, 342
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	6 cut(s)	278, 337, 345, 452, 467, 511
CviJI	RGCY	7 cut(s)	96, 115, 146, 249, 349, 481, 497
CviKI_1	RGCY	7 cut(s)	96, 115, 146, 249, 349, 481, 497
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	105, 263
EarI	CTCTTC	2 cut(s)	105, 263
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	249, 349
EcoT22I	ATGCAT	1 cut(s)	516
FaeI	CATG	6 cut(s)	281, 340, 348, 455, 470, 514
FaiI	YATR	8 cut(s)	20, 234, 279, 338, 346, 453, 468, 512
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 192, 224
FatI	CATG	6 cut(s)	277, 336, 344, 451, 466, 510
Fnu4HI	GCNGC	4 cut(s)	24, 94, 380, 482
Fsp4HI	GCNGC	4 cut(s)	24, 94, 380, 482
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	4 cut(s)	24, 94, 380, 482
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	146, 249, 349
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	6 cut(s)	281, 340, 348, 455, 470, 514
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	5 cut(s)	54, 407, 417, 439, 463
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	3 cut(s)	215, 265, 286
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	2 cut(s)	411, 460
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	4 cut(s)	284, 330, 435, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 102, 346, 355
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	281, 340, 348, 455, 470, 514
HspAI	GCGC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	205
LguI	GCTCTTC	2 cut(s)	105, 263
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	4 cut(s)	35, 105, 391, 468
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	122, 200, 280
MlyI	GAGTC	2 cut(s)	426, 457
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	7 cut(s)	157, 194, 348, 361, 407, 438, 471
Mph1103I	ATGCAT	1 cut(s)	516
MroNI	GCCGGC	1 cut(s)	340
MseI	TTAA	1 cut(s)	517
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	251, 351
MvaI	CCWGG	2 cut(s)	251, 351
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	4 cut(s)	93, 102, 346, 355
NaeI	GCCGGC	1 cut(s)	342
NdeII	GATC	1 cut(s)	205
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	281, 340, 348, 455, 470, 514
NlaIV	GGNNCC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	3 cut(s)	281, 340, 514
PciI	ACATGT	1 cut(s)	277
PciSI	GCTCTTC	2 cut(s)	105, 263
PdiI	GCCGGC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	54, 407, 439
PkrI	GCNGC	4 cut(s)	25, 95, 381, 483
PleI	GAGTC	2 cut(s)	425, 457
PpsI	GAGTC	2 cut(s)	425, 457
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	249, 349
PspGI	CCWGG	2 cut(s)	249, 349
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	144
RruI	TCGCGA	1 cut(s)	412
SapI	GCTCTTC	2 cut(s)	105, 263
SaqAI	TTAA	1 cut(s)	517
SatI	GCNGC	4 cut(s)	24, 94, 380, 482
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	2 cut(s)	426, 457
ScrFI	CCNGG	2 cut(s)	251, 351
SetI	ASST	7 cut(s)	12, 98, 117, 162, 205, 255, 459
SfaNI	GCATC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	249, 349
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	241, 366, 476
TfiI	GAWTC	3 cut(s)	54, 407, 439
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TscAI	CASTG	4 cut(s)	33, 42, 112, 218
TseI	GCWGC	4 cut(s)	23, 93, 379, 481
TspDTI	ATGAA	3 cut(s)	17, 227, 281
TspRI	CASTG	4 cut(s)	33, 42, 112, 218
XceI	RCATGY	3 cut(s)	281, 340, 514
XspI	CTAG	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.