Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Reverse (-)

27633621 .. 27637348

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGTATGGAAAAATCCAACAAATATATGAACATAACAATATTATAATATATGAATCGGTTATACTAACCCAAAACCCACAAACCCCTTTAACAAATTCAAACCCACCTCTCTGTCTCACTCTCACTCTCTCTCTCCACAACATTTCCACTTCCATGGAAGAAACACTACCAATGTTAACCACTCGCCGGACTGACCAAAGCCCCGTCAACCACCGTGACCACCTCCCCAAAAGCCCAAGAGTTCCAATGGAGTTTCTCTCAAGGTCATGGAGTGCCTCAGCTCTTGAAGTCTCCAAAGCTCTGTCTCAGTCTCACCCTCCTCCGCTGCCTCCTCCTCCTCCTTCATGCATGGCTAATTCCAAGTCCTCAAACAGCTCTTCCTCCTGCACCACCACCGCAACCACTACCACTCCTTCCATTCCTGAAGATATCGCAGGAGAAGCAGAGGAGCTGCCGTCCCTCCCCGGAAACCAATTTTACTTTGCTTCCTCTGTCACTTCCCAACTTGTCCTTGACCGCATTATGTCACAGTCCATGAGAGAGGAAGTGTCTCCATTGACATCAGGGAGGCTCTCACACAGCAGCGGACCTCTGAACAATGGTGGTTCTCTAACAGAGACAGATAGCCCTCCAGTCTCACCCTCCGATGAGTTCGACGACGTCGTTAAGTATTTTCGAACCCACAACAGCATACAAAACCTGTTCAACGGCAGCCGGAGCAGCGCTGGAACTGGCAACAATGCCCCTAGCGGCGGAGCCAAGACGGTGGGGAGGTGGCTGAAAGAGAGAAAAGAGAAGAAAAAGGAGGAGACGAGAGTGCACAATGCGCAGGTCCACGCGGCGGTTTCAGTTGCTGCGGTGGCTGCTGCAGTGGCCGCCATTGCTGCAGCCACAGCGGCTTCTTCGGGGTCGAGAAAAAACGATCAAGCAGGGAAGACTGACATGGCAGTGGCGTCTGCCGCCACGTTGGTAGCTGCTCAATGTGCCGAGGCTGCGGAAGCTATGGGAGCTGAGCATGACCATCTTACTTCAGTGGTCAGCTCCGCCGTTAATGTTCATTCACATGATGATATTACCACCCTCACTGCAGCTGCTGCGACAGCTTTACGAGGGGCAGCGACCCTAAAGGCAAGGGCAATGAAGGAGGTGTGGAACATATCAGCAGTGATTCCAGTGGAAAAGGGAATGGGAATCGGAGTCTGCGGTGGTAAAACTAACAACAACGGTGGTGATCGCAGCAGCGGCAGCAGCTTTAGTGATCGATCTTGTCCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

426

Amino Acids

44.63

Weight (kDa)

6.5

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AatII	GACGTC	1 cut(s)	663
Acc16I	TGCGCA	1 cut(s)	828
Acc36I	ACCTGC	1 cut(s)	820
AccII	CGCG	1 cut(s)	839
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	444, 1014
AcyI	GRCGYC	2 cut(s)	660, 953
AfeI	AGCGCT	1 cut(s)	724
AfiI	CCNNNNNNNGG	3 cut(s)	186, 752, 841
AgsI	TTSAA	3 cut(s)	99, 287, 706
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	8 cut(s)	119, 295, 309, 315, 555, 611, 640, 803
Alw44I	GTGCAC	1 cut(s)	818
AlwNI	CAGNNNCTG	2 cut(s)	854, 1094
Aor51HI	AGCGCT	1 cut(s)	724
AoxI	GGCC	1 cut(s)	873
ApaLI	GTGCAC	1 cut(s)	818
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	725, 829
AspS9I	GGNCC	2 cut(s)	587, 832
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	305, 630, 1241
AsuII	TTCGAA	1 cut(s)	676
AvaII	GGWCC	2 cut(s)	587, 832
BaeGI	GKGCMC	1 cut(s)	822
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	1 cut(s)	822
BbvCI	CCTCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	1029
BceAI	ACGGC	3 cut(s)	439, 724, 1031
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	8 cut(s)	119, 295, 309, 315, 555, 611, 640, 803
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	3 cut(s)	867, 885, 1086
BfoI	RGCGCY	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	820
BglI	GCCNNNNNGGC	1 cut(s)	896
BlpI	GCTNAGC	1 cut(s)	1011
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	2 cut(s)	587, 832
BmgT120I	GGNCC	2 cut(s)	587, 832
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	941
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	1011
Bpu14I	TTCGAA	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	1261
BsaHI	GRCGYC	2 cut(s)	660, 953
BsaJI	CCNNGG	3 cut(s)	153, 463, 987
BsaXI	ACNNNNNCTCC	4 cut(s)	394, 424, 440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 752, 841
Bse1I	ACTGG	3 cut(s)	632, 736, 1172
Bse3DI	GCAATG	2 cut(s)	879, 1143
BseCI	ATCGAT	1 cut(s)	1261
BseDI	CCNNGG	3 cut(s)	153, 463, 987
BseLI	CCNNNNNNNGG	3 cut(s)	186, 752, 841
BseMI	GCAATG	2 cut(s)	879, 1143
BseMII	CTCAG	3 cut(s)	291, 320, 1002
BseNI	ACTGG	3 cut(s)	632, 736, 1172
BseRI	GAGGAG	6 cut(s)	309, 321, 324, 327, 461, 821
BseSI	GKGCMC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	1 cut(s)	875
BshVI	ATCGAT	1 cut(s)	1261
BsiHKAI	GWGCWC	1 cut(s)	822
BsiSI	CCGG	3 cut(s)	187, 465, 715
BslFI	GGGAC	2 cut(s)	442, 1254
BslI	CCNNNNNNNGG	3 cut(s)	186, 752, 841
BsmAI	GTCTC	8 cut(s)	119, 295, 309, 315, 555, 611, 640, 803
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	2 cut(s)	442, 1254
BsnI	GGCC	1 cut(s)	875
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp143I	GATC	4 cut(s)	922, 1231, 1258, 1262
Bsp1720I	GCTNAGC	1 cut(s)	1011
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	3 cut(s)	290, 319, 1003
BspDI	ATCGAT	1 cut(s)	1261
BspFNI	CGCG	1 cut(s)	839
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	3 cut(s)	871, 889, 1090
BspMI	ACCTGC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	676
BsrDI	GCAATG	2 cut(s)	879, 1143
BsrI	ACTGG	3 cut(s)	632, 736, 1172
BssECI	CCNNGG	3 cut(s)	153, 463, 987
BssMI	GATC	4 cut(s)	922, 1231, 1258, 1262
BssNI	GRCGYC	2 cut(s)	660, 953
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	4 cut(s)	215, 531, 766, 1226
Bst6I	CTCTTC	1 cut(s)	382
BstACI	GRCGYC	2 cut(s)	660, 953
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstBI	TTCGAA	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	277, 306, 1011
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	839
BstH2I	RGCGCY	1 cut(s)	726
BstHHI	GCGC	2 cut(s)	725, 829
BstKTI	GATC	4 cut(s)	925, 1234, 1261, 1265
BstMAI	GTCTC	8 cut(s)	119, 295, 309, 315, 555, 611, 640, 803
BstMBI	GATC	4 cut(s)	922, 1231, 1258, 1262
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	3 cut(s)	867, 885, 1086
BstSLI	GKGCMC	1 cut(s)	822
BstUI	CGCG	1 cut(s)	839
BstV2I	GAAGAC	1 cut(s)	941
BstXI	CCANNNNNNTGG	2 cut(s)	154, 766
Bsu15I	ATCGAT	1 cut(s)	1261
BsuRI	GGCC	1 cut(s)	875
BsuTUI	ATCGAT	1 cut(s)	1261
BtgI	CCRYGG	1 cut(s)	153
BtsI	GCAGTG	4 cut(s)	876, 954, 1083, 1170
BtsIMutI	CAGTG	6 cut(s)	876, 954, 1038, 1083, 1170, 1179
BveI	ACCTGC	1 cut(s)	820
CaiI	CAGNNNCTG	2 cut(s)	854, 1094
CfoI	GCGC	2 cut(s)	725, 829
Cfr13I	GGNCC	2 cut(s)	587, 832
ClaI	ATCGAT	1 cut(s)	1261
CseI	GACGC	1 cut(s)	942
CspCI	CAANNNNNGTGG	2 cut(s)	1207, 1242
CviAII	CATG	8 cut(s)	154, 267, 345, 349, 535, 943, 1016, 1064
DdeI	CTNAG	3 cut(s)	277, 306, 1011
DpnI	GATC	4 cut(s)	924, 1233, 1260, 1264
DpnII	GATC	4 cut(s)	922, 1231, 1258, 1262
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
EciI	GGCGGA	2 cut(s)	768, 1033
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	587, 832
Eco47III	AGCGCT	1 cut(s)	724
Eco57I	CTGAAG	2 cut(s)	444, 1014
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	8 cut(s)	157, 270, 348, 352, 538, 946, 1019, 1067
FaqI	GGGAC	2 cut(s)	442, 1254
FatI	CATG	8 cut(s)	153, 266, 344, 348, 534, 942, 1015, 1063
FspBI	CTAG	1 cut(s)	747
FspI	TGCGCA	1 cut(s)	828
GlaI	GCGC	2 cut(s)	724, 828
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	3 cut(s)	187, 465, 715
HgaI	GACGC	1 cut(s)	942
HhaI	GCGC	2 cut(s)	725, 829
Hin1I	GRCGYC	2 cut(s)	660, 953
Hin1II	CATG	8 cut(s)	157, 270, 348, 352, 538, 946, 1019, 1067
Hin6I	GCGC	2 cut(s)	723, 827
HinP1I	GCGC	2 cut(s)	723, 827
HincII	GTYRAC	2 cut(s)	177, 208
HindII	GTYRAC	2 cut(s)	177, 208
HinfI	GANTC	4 cut(s)	53, 1168, 1191, 1197
HpaI	GTTAAC	1 cut(s)	177
HpaII	CCGG	3 cut(s)	187, 465, 715
HphI	GGTGA	3 cut(s)	305, 630, 1241
Hpy166II	GTNNAC	4 cut(s)	177, 208, 820, 835
Hpy188I	TCNGA	3 cut(s)	594, 646, 1196
Hpy188III	TCNNGA	3 cut(s)	284, 422, 912
Hpy8I	GTNNAC	4 cut(s)	177, 208, 820, 835
Hpy99I	CGWCG	3 cut(s)	659, 662, 665
HpyAV	CCTTC	3 cut(s)	351, 423, 1135
HpyCH4III	ACNGT	4 cut(s)	215, 531, 766, 1226
HpyCH4IV	ACGT	2 cut(s)	660, 965
HpyCH4V	TGCA	6 cut(s)	348, 387, 820, 869, 887, 1088
HpyF3I	CTNAG	3 cut(s)	277, 306, 1011
HpySE526I	ACGT	2 cut(s)	660, 965
Hsp92I	GRCGYC	2 cut(s)	660, 953
Hsp92II	CATG	8 cut(s)	157, 270, 348, 352, 538, 946, 1019, 1067
HspAI	GCGC	2 cut(s)	723, 827
KspAI	GTTAAC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	922, 1231, 1258, 1262
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	5 cut(s)	448, 717, 755, 1007, 1046
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	660, 965
MaeIII	GTNAC	3 cut(s)	215, 493, 525
MalI	GATC	4 cut(s)	924, 1233, 1260, 1264
MboI	GATC	4 cut(s)	922, 1231, 1258, 1262
MboII	GAAGA	6 cut(s)	170, 369, 437, 808, 894, 946
MhlI	GDGCHC	1 cut(s)	822
MluCI	AATT	3 cut(s)	94, 355, 473
MlyI	GAGTC	1 cut(s)	1206
MmeI	TCCRAC	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	4 cut(s)	89, 176, 666, 1050
MslI	CAYNNNNRTG	3 cut(s)	152, 947, 1062
MspA1I	CMGCKG	5 cut(s)	325, 585, 896, 1091, 1242
MspI	CCGG	3 cut(s)	187, 465, 715
MspR9I	CCNGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	839
NciI	CCSGG	1 cut(s)	465
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	922, 1231, 1258, 1262
NlaIII	CATG	8 cut(s)	157, 270, 348, 352, 538, 946, 1019, 1067
NlaIV	GGNNCC	1 cut(s)	757
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	3 cut(s)	215, 493, 525
NsbI	TGCGCA	1 cut(s)	828
NsiI	ATGCAT	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	53, 1168, 1191
PflFI	GACNNNGTC	1 cut(s)	659
PleI	GAGTC	1 cut(s)	1205
PpsI	GAGTC	1 cut(s)	1205
PsiI	TTATAA	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	587, 832
PstI	CTGCAG	3 cut(s)	871, 889, 1090
PstNI	CAGNNNCTG	2 cut(s)	854, 1094
PsyI	GACNNNGTC	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	1091
RseI	CAYNNNNRTG	3 cut(s)	152, 947, 1062
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	89, 176, 666, 1050
Sau3AI	GATC	4 cut(s)	922, 1231, 1258, 1262
Sau96I	GGNCC	2 cut(s)	587, 832
SchI	GAGTC	1 cut(s)	1206
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	822
SfcI	CTRYAG	3 cut(s)	867, 885, 1086
SfuI	TTCGAA	1 cut(s)	676
SinI	GGWCC	2 cut(s)	587, 832
SmiMI	CAYNNNNRTG	3 cut(s)	152, 947, 1062
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	94, 355, 473
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	4 cut(s)	215, 531, 766, 1226
TaiI	ACGT	2 cut(s)	663, 968
TaqI	TCGA	4 cut(s)	654, 676, 911, 1261
TasI	AATT	3 cut(s)	94, 355, 473
TauI	GCSGC	6 cut(s)	753, 842, 878, 899, 962, 1245
TfiI	GAWTC	3 cut(s)	53, 1168, 1191
Tru1I	TTAA	4 cut(s)	89, 176, 666, 1050
Tru9I	TTAA	4 cut(s)	89, 176, 666, 1050
TscAI	CASTG	6 cut(s)	876, 954, 1038, 1090, 1170, 1179
TseFI	GTSAC	3 cut(s)	215, 493, 525
Tsp45I	GTSAC	3 cut(s)	215, 493, 525
TspDTI	ATGAA	5 cut(s)	42, 66, 333, 1046, 1154
TspRI	CASTG	6 cut(s)	876, 954, 1038, 1090, 1170, 1179
Tth111I	GACNNNGTC	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	587, 832
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	747
ZraI	GACGTC	1 cut(s)	661
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.