Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Forward (+)

59601 .. 62958

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002902.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

atggaagaaacactcccaatgttgagctctcgccggccggagcagactacggtgggacttgacaacctccccaaaagcccaagagtcccaatggagttcctctcaaggtcttggagtgcttctgctcttgaagtctccaaagctctgtctcaaccaccccctgttcctcaatacatgaactctaagtccacccacaactcttcttcttgcaccaccaccacaacagcttctatacccgaagatgtagccggagaatctgaagagactccagttctgtctgggaatcaattctactttgctacctctgctacttctcagttggtcctggaccgcattatgtcacagtccatgagagaggaagtgtcaccattaacatcagggaggctttcacacagctctggaccattgaacgccggaggctcatttgagactgatagccctcctgtttctccatcggaggagttcgacgacgtcgttaagttcttccgcaaccacaacagcataaaccagctgttcaacaacggcagtcggagcagcgctgtaaatgtcagtagtacccctgccaccgggggagccaagacagttgggagatggttgaaggatcgaaaagagaagaaaaaggaggagactagagtccacaatgctcaagtccacgcagctgtttcagttgccgcagtggctgcagctgtagctgccattgcggcagccacagccgcttcttcttcaacctcatcaagcaagaacaacgaacaagcggccaagacggatatggctgtggcatctgctgctacattggtagctgcacaatgtgctgaagctgcagaggctatgggagctgagcatgaccatcttacttctgtggttagctctgcagtcaatgttcgctctcatgatgatattaccactctcactgctgccgctgccacagctttaagaggtgcagcgacactcaaggcaagggcaatgaaggaggtgtggaacatagcagcagtgataccagtggaaaaaggaatgggaatcggggtctgtggtaaaggcaataacaacagcaatggcagctttagtagcagtgaagagcttgttcctgctcctaacacttttcttggggcctctaaccaagatctgcttgctaggggaactgaactcctcaaacgcacccgaaaaggtgatcttcactggaaagtagtatctgtttatattcatcgaacaggccaggtgatgctgaaaatgaagagcaaacatgttgcaggaacattcaccaaaaagaaaaagaatgttgtgttggaagtgtgcaagaacatgccggcatggcctgggaggcacttgttcgagggtggagagcagcgccgttactttggactgaaaacagaatcgcgaggagtcgtggagtttgagtgcaagaatcagagggaacatgacgtctggactcatggagtttcgaggctgctctctattgtagccgagagaaagaacatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

493

Amino Acids

52.83

Weight (kDa)

9.14

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	474, 1422
AccII	CGCG	1 cut(s)	1375
AciI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
AclWI	GGATC	1 cut(s)	609
AcoI	YGGCCR	2 cut(s)	35, 756
AcuI	CTGAAG	2 cut(s)	279, 834
AcyI	GRCGYC	2 cut(s)	471, 1419
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	1 cut(s)	556
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	1240
AgsI	TTSAA	5 cut(s)	131, 409, 517, 598, 726
AjnI	CCWGG	3 cut(s)	324, 1212, 1312
AjuI	GAANNNNNNNTTGG	2 cut(s)	1265, 1297
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	5 cut(s)	139, 153, 257, 422, 620
AlwI	GGATC	1 cut(s)	609
AlwNI	CAGNNNCTG	1 cut(s)	680
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	5 cut(s)	35, 756, 1107, 1210, 1310
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	539, 1347
AspS9I	GGNCC	4 cut(s)	322, 328, 401, 1107
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	4 cut(s)	357, 1178, 1228, 1249
AvaII	GGWCC	3 cut(s)	322, 328, 401
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	3 cut(s)	460, 585, 855
BceAI	ACGGC	2 cut(s)	538, 1332
BciT130I	CCWGG	3 cut(s)	326, 1214, 1314
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BfaI	CTAG	2 cut(s)	630, 1131
BfmI	CTRYAG	4 cut(s)	681, 687, 819, 870
BfoI	RGCGCY	2 cut(s)	540, 1348
BglI	GCCNNNNNGGC	4 cut(s)	677, 701, 1309, 1318
BglII	AGATCT	1 cut(s)	1120
BlpI	GCTNAGC	1 cut(s)	837
Bme1390I	CCNGG	4 cut(s)	326, 568, 1214, 1314
Bme18I	GGWCC	3 cut(s)	322, 328, 401
BmgT120I	GGNCC	4 cut(s)	322, 328, 401, 1107
BmiI	GGNNCC	2 cut(s)	574, 1108
BmrFI	CCNGG	4 cut(s)	326, 568, 1214, 1314
BmsI	GCATC	2 cut(s)	788, 1209
BoxI	GACNNNNGTC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	3 cut(s)	88, 630, 935
BpuMI	CCSGG	1 cut(s)	568
BsaHI	GRCGYC	2 cut(s)	471, 1419
BsaJI	CCNNGG	2 cut(s)	567, 1313
BsaXI	ACNNNNNCTCC	2 cut(s)	1379, 1409
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	2 cut(s)	33, 1303
Bse1I	ACTGG	3 cut(s)	269, 998, 1181
Bse3DI	GCAATG	3 cut(s)	696, 969, 1057
BseBI	CCWGG	3 cut(s)	326, 1214, 1314
BseDI	CCNNGG	2 cut(s)	567, 1313
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	3 cut(s)	696, 969, 1057
BseMII	CTCAG	2 cut(s)	329, 828
BseNI	ACTGG	3 cut(s)	269, 998, 1181
BseRI	GAGGAG	4 cut(s)	473, 638, 1136, 1392
BseX3I	CGGCCG	1 cut(s)	35
BsgI	GTGCAG	2 cut(s)	786, 960
Bsh1236I	CGCG	1 cut(s)	1375
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	5 cut(s)	37, 758, 1109, 1212, 1312
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	34, 38, 249, 414, 567, 1304
BslFI	GGGAC	2 cut(s)	69, 71
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BsmFI	GGGAC	2 cut(s)	69, 71
BsnI	GGCC	5 cut(s)	37, 758, 1109, 1212, 1312
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	601, 1120, 1168
Bsp1720I	GCTNAGC	1 cut(s)	837
Bsp68I	TCGCGA	1 cut(s)	1375
BspACI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
BspANI	GGCC	5 cut(s)	37, 758, 1109, 1212, 1312
BspCNI	CTCAG	2 cut(s)	328, 829
BspFNI	CGCG	1 cut(s)	1375
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	574, 1108
BspMAI	CTGCAG	3 cut(s)	685, 823, 874
BspPI	GGATC	1 cut(s)	609
BspQI	GCTCTTC	2 cut(s)	1068, 1226
BsrDI	GCAATG	3 cut(s)	696, 969, 1057
BsrFI	RCCGGY	2 cut(s)	33, 1303
BsrI	ACTGG	3 cut(s)	269, 998, 1181
BssAI	RCCGGY	2 cut(s)	33, 1303
BssECI	CCNNGG	2 cut(s)	567, 1313
BssMI	GATC	3 cut(s)	601, 1120, 1168
BssNI	GRCGYC	2 cut(s)	471, 1419
Bst2UI	CCWGG	3 cut(s)	326, 1214, 1314
Bst4CI	ACNGT	3 cut(s)	52, 345, 583
Bst6I	CTCTTC	4 cut(s)	205, 255, 1068, 1226
BstACI	GRCGYC	2 cut(s)	471, 1419
BstAPI	GCANNNNNTGC	3 cut(s)	680, 785, 809
BstC8I	GCNNGC	3 cut(s)	35, 1128, 1305
BstDEI	CTNAG	3 cut(s)	183, 315, 837
BstFNI	CGCG	1 cut(s)	1375
BstH2I	RGCGCY	2 cut(s)	540, 1348
BstHHI	GCGC	2 cut(s)	539, 1347
BstKTI	GATC	3 cut(s)	604, 1123, 1171
BstMAI	GTCTC	5 cut(s)	139, 153, 257, 422, 620
BstMBI	GATC	3 cut(s)	601, 1120, 1168
BstMCI	CGRYCG	1 cut(s)	38
BstNI	CCWGG	3 cut(s)	326, 1214, 1314
BstNSI	RCATGY	3 cut(s)	1244, 1303, 1477
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	4 cut(s)	324, 566, 1212, 1312
BstSFI	CTRYAG	4 cut(s)	681, 687, 819, 870
BstUI	CGCG	1 cut(s)	1375
BstX2I	RGATCY	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	1120
BstZI	CGGCCG	1 cut(s)	35
BsuRI	GGCC	5 cut(s)	37, 758, 1109, 1212, 1312
BtsI	GCAGTG	4 cut(s)	681, 909, 996, 1075
BtsIMutI	CAGTG	6 cut(s)	681, 909, 996, 1005, 1075, 1174
BtuMI	TCGCGA	1 cut(s)	1375
Cac8I	GCNNGC	3 cut(s)	35, 1128, 1305
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	2 cut(s)	539, 1347
Cfr10I	RCCGGY	2 cut(s)	33, 1303
Cfr13I	GGNCC	4 cut(s)	322, 328, 401, 1107
Csp6I	GTAC	1 cut(s)	555
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	3 cut(s)	183, 315, 837
DpnI	GATC	3 cut(s)	603, 1122, 1170
DpnII	GATC	3 cut(s)	601, 1120, 1168
DraIII	CACNNNGTG	1 cut(s)	809
EaeI	YGGCCR	2 cut(s)	35, 756
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	4 cut(s)	205, 255, 1068, 1226
EarI	CTCTTC	4 cut(s)	205, 255, 1068, 1226
Ecl136II	GAGCTC	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	3 cut(s)	322, 328, 401
Eco47III	AGCGCT	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	279, 834
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	1107
EcoRII	CCWGG	3 cut(s)	324, 1212, 1312
EcoT22I	ATGCAT	1 cut(s)	1479
EcoT38I	GRGCYC	1 cut(s)	29
FalI	AAGNNNNNCTT	4 cut(s)	1110, 1142, 1155, 1187
FaqI	GGGAC	2 cut(s)	69, 71
FriOI	GRGCYC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	630, 1131
GlaI	GCGC	2 cut(s)	538, 1346
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	2 cut(s)	540, 1348
HaeIII	GGCC	5 cut(s)	37, 758, 1109, 1212, 1312
HapII	CCGG	6 cut(s)	34, 38, 249, 414, 567, 1304
HhaI	GCGC	2 cut(s)	539, 1347
Hin1I	GRCGYC	2 cut(s)	471, 1419
Hin6I	GCGC	2 cut(s)	537, 1345
HinP1I	GCGC	2 cut(s)	537, 1345
HpaII	CCGG	6 cut(s)	34, 38, 249, 414, 567, 1304
HphI	GGTGA	4 cut(s)	357, 1178, 1228, 1249
Hpy166II	GTNNAC	3 cut(s)	189, 637, 652
Hpy188I	TCNGA	4 cut(s)	259, 457, 531, 1407
Hpy188III	TCNNGA	5 cut(s)	128, 399, 890, 1374, 1423
Hpy8I	GTNNAC	3 cut(s)	189, 637, 652
Hpy99I	CGWCG	3 cut(s)	470, 473, 476
HpyAV	CCTTC	2 cut(s)	592, 961
HpyCH4III	ACNGT	3 cut(s)	52, 345, 583
HpyCH4IV	ACGT	2 cut(s)	471, 1419
HpyF3I	CTNAG	3 cut(s)	183, 315, 837
HpySE526I	ACGT	2 cut(s)	471, 1419
Hsp92I	GRCGYC	2 cut(s)	471, 1419
HspAI	GCGC	2 cut(s)	537, 1345
KroI	GCCGGC	2 cut(s)	33, 1303
KroNI	GCCGGC	2 cut(s)	35, 1305
Kzo9I	GATC	3 cut(s)	601, 1120, 1168
LguI	GCTCTTC	2 cut(s)	1068, 1226
LmnI	GCTCC	5 cut(s)	40, 531, 572, 833, 1093
LweI	GCATC	2 cut(s)	788, 1209
MaeI	CTAG	2 cut(s)	630, 1131
MaeII	ACGT	2 cut(s)	471, 1419
MaeIII	GTNAC	3 cut(s)	339, 363, 1349
MalI	GATC	3 cut(s)	603, 1122, 1170
MboI	GATC	3 cut(s)	601, 1120, 1168
MflI	RGATCY	1 cut(s)	1120
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	5 cut(s)	93, 259, 642, 1389, 1420
MmeI	TCCRAC	2 cut(s)	509, 1263
Mph1103I	ATGCAT	1 cut(s)	1479
MroNI	GCCGGC	2 cut(s)	33, 1303
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	4 cut(s)	371, 477, 932, 1480
MspA1I	CMGCKG	4 cut(s)	511, 659, 686, 920
MspI	CCGG	6 cut(s)	34, 38, 249, 414, 567, 1304
MspR9I	CCNGG	4 cut(s)	326, 568, 1214, 1314
MvaI	CCWGG	3 cut(s)	326, 1214, 1314
MvnI	CGCG	1 cut(s)	1375
NaeI	GCCGGC	2 cut(s)	35, 1305
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	601, 1120, 1168
NgoMIV	GCCGGC	2 cut(s)	33, 1303
NlaIV	GGNNCC	2 cut(s)	574, 1108
NmuCI	GTSAC	2 cut(s)	339, 363
NruI	TCGCGA	1 cut(s)	1375
NsiI	ATGCAT	1 cut(s)	1479
NspI	RCATGY	3 cut(s)	1244, 1303, 1477
PagI	TCATGA	1 cut(s)	889
PciI	ACATGT	1 cut(s)	1240
PciSI	GCTCTTC	2 cut(s)	1068, 1226
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdiI	GCCGGC	2 cut(s)	35, 1305
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	5 cut(s)	254, 283, 1017, 1370, 1402
PflFI	GACNNNGTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	324
PleI	GAGTC	5 cut(s)	92, 259, 641, 1388, 1420
PpsI	GAGTC	5 cut(s)	92, 259, 641, 1388, 1420
PscI	ACATGT	1 cut(s)	1240
PshAI	GACNNNNGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	3 cut(s)	324, 1212, 1312
PspGI	CCWGG	3 cut(s)	324, 1212, 1312
PspN4I	GGNNCC	2 cut(s)	574, 1108
PspPI	GGNCC	4 cut(s)	322, 328, 401, 1107
PstI	CTGCAG	3 cut(s)	685, 823, 874
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	1120
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	3 cut(s)	511, 659, 686
RruI	TCGCGA	1 cut(s)	1375
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	2 cut(s)	1068, 1226
SaqAI	TTAA	4 cut(s)	371, 477, 932, 1480
Sau3AI	GATC	3 cut(s)	601, 1120, 1168
Sau96I	GGNCC	4 cut(s)	322, 328, 401, 1107
SchI	GAGTC	5 cut(s)	93, 259, 642, 1389, 1420
ScrFI	CCNGG	4 cut(s)	326, 568, 1214, 1314
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	788, 1209
SfcI	CTRYAG	4 cut(s)	681, 687, 819, 870
SinI	GGWCC	3 cut(s)	322, 328, 401
SmlI	CTYRAG	3 cut(s)	103, 645, 950
SmoI	CTYRAG	3 cut(s)	103, 645, 950
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	7 cut(s)	331, 487, 672, 701, 714, 755, 918
SspMI	CTAG	2 cut(s)	630, 1131
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	4 cut(s)	324, 566, 1212, 1312
TaaI	ACNGT	3 cut(s)	52, 345, 583
TaiI	ACGT	2 cut(s)	474, 1422
TaqI	TCGA	5 cut(s)	465, 604, 1204, 1329, 1439
TasI	AATT	1 cut(s)	287
TauI	GCSGC	5 cut(s)	674, 704, 716, 758, 920
TfiI	GAWTC	5 cut(s)	254, 283, 1017, 1370, 1402
Tru1I	TTAA	4 cut(s)	371, 477, 932, 1480
Tru9I	TTAA	4 cut(s)	371, 477, 932, 1480
TscAI	CASTG	6 cut(s)	681, 916, 996, 1005, 1075, 1181
TseFI	GTSAC	2 cut(s)	339, 363
Tsp45I	GTSAC	2 cut(s)	339, 363
TspDTI	ATGAA	4 cut(s)	191, 980, 1190, 1244
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	6 cut(s)	681, 916, 996, 1005, 1075, 1181
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	3 cut(s)	322, 328, 401
XceI	RCATGY	3 cut(s)	1244, 1303, 1477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	2 cut(s)	630, 1131
ZraI	GACGTC	2 cut(s)	472, 1420
Zsp2I	ATGCAT	1 cut(s)	1479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.