Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Reverse (-)

20855525 .. 20859243

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGAAGAGAAACTGCCAATGCTAAGCACTCGCCGGACTGAGCAGAACCCAATCAACCTTGACCACCTGCCCAAAAGCCCAAGAGCTCCAATGGAGTTTCTGTCAAGGTCTTGGAGTGCCTCTGCTCTTGAAGTCTCCAAAGCTCTGTCTCATCCTACTCCTCCTCTGCCTCCTTCGTGCATGGCTTCTTCCAAGTCTTCTTCAAACAGCTCTTCTTCATGCAACACCACAACCACCACTTCCACTATACCTGAAGACATTGCTGGAGAGTCAGAGGAGCTGCCAGTTCTCTCTGGCCATCAGTTTTACTTTGCTTCCTCTGTAACTTCTCAGCTTGTGCTTGATCGCATTATGTCTCAGTCCATGAGAGAGGAAGTGTCTCCATTAACATCAGGCAGGCTCTCACACAGCAGTGGACCTTTGAACGCTGGTGGTTCTCTAACAGAGACAGATAGCCCTCCAGTTTCTCCCTCTGAGGAATACGACGACGTCGTTAAGTACTTTCGAACCCACAACAGCATCCACAACCTATTCAACGGCAGCCGCAGCGGTGCCGGAAATGCCAACAATACCCCTGCTGCTGGAGGGGCCAAGACGGTGGGGAGGTGGCTGAAAGAGAGAAAAGAGAAGAAAAAGGAGGAGACAAGAGTCCACAATGCACAGGTCCACGCAGCTGTTTCAGTTGCCGCGGTGGCTGCTGCTGTGGCCACCATTGCTGCAGCCACAGCGGCTTCTTCAGCGTCAAGAAAGAACGAACAAGCAGCCAAGACAGACATGGCTGTGGCATCTGCTGCCACGCTTGTAGCTGCTCAATGTGCTGAGGCTGCAGAAGCCATGGGAGCTGAGCATGACCATCTCACTTCTGTGGTCAGCTCTGCTGTTAATGTTCGCTCTCACGACGACATTACCACTCTCACAGCTGCCGCTGCCACAGCTTTAAGAGGGGCAGCGACCCTAAAGGCAAGGGCAATGAAGGAGGTGTGGAACATAGCAGCAGTGATACCAGTGGAAAAGGGAATGGGAATCGGAGTCTGCGGAAAAGCTAATAATGGTGAAAGCAATGGCAGCTTTAGTGATGAGCTCGTTGTTCCTTCTCCTCTAGACACTACCTTTCTTGGGGTCTGTAACCAAGACCTCCTTGCTAGGGGCACTGAGCTCCTCAAACGCACACGAAAAGGCGATCTGCACTGGAAAATAGTATCTGTTTATATTCACCGAACAGGCCAGGTGATGCTAAAAATGAAGAGCAAACACGTAGCAGGAACTTTCACCAAGAAGAAAAAGAATGTTGTGTTGGAGGTCTGCAAGAACATGTCTGCATGGCCAGGAAGACACTTGTTCGACGATGGAGAGCAGCGTCGTTACTTTGGGCTGAAAACAGAGGCACGAGGGGTCGTAGAGTTCGAGTGTAAGAACCAGAGAGAGCATGACGTGTGGACGCATGGAGTTTCAAGGCTGCTGTCTATTGTCGCCGAGAGGAAGAACAGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

498

Amino Acids

53.37

Weight (kDa)

9.02

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	75
AatII	GACGTC	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	551
AccII	CGCG	1 cut(s)	689
AciI	CCGC	7 cut(s)	544, 549, 687, 689, 728, 924, 1035
AcoI	YGGCCR	3 cut(s)	295, 705, 1322
AcuI	CTGAAG	2 cut(s)	273, 720
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	581, 1116, 1144
AflIII	ACRYGT	3 cut(s)	1252, 1311, 1431
AgsI	TTSAA	5 cut(s)	131, 204, 424, 535, 1452
AjiI	CACGTC	1 cut(s)	1432
AjnI	CCWGG	2 cut(s)	1224, 1324
AjuI	GAANNNNNNNTTGG	2 cut(s)	1277, 1309
AleI	CACNNNNGTG	2 cut(s)	411, 863
Alw21I	GWGCWC	3 cut(s)	88, 1083, 1158
Alw26I	GTCTC	6 cut(s)	139, 153, 360, 384, 440, 635
AoxI	GGCC	5 cut(s)	295, 588, 705, 1222, 1322
AspS9I	GGNCC	3 cut(s)	416, 588, 664
AsuHPI	GGTGA	4 cut(s)	1064, 1205, 1240, 1261
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	416, 664
BaeGI	GKGCMC	1 cut(s)	1151
BalI	TGGCCA	3 cut(s)	297, 707, 1324
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	3 cut(s)	88, 1083, 1158
BauI	CACGAG	1 cut(s)	1386
BbsI	GAAGAC	3 cut(s)	189, 261, 1336
Bbv12I	GWGCWC	3 cut(s)	88, 1083, 1158
BbvCI	CCTCAGC	1 cut(s)	819
BccI	CCATC	3 cut(s)	306, 861, 1340
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	2 cut(s)	1226, 1326
BcoDI	GTCTC	6 cut(s)	139, 153, 360, 384, 440, 635
BfaI	CTAG	2 cut(s)	1100, 1143
BfmI	CTRYAG	2 cut(s)	717, 825
BfuAI	ACCTGC	1 cut(s)	75
BglI	GCCNNNNNGGC	2 cut(s)	692, 728
BlpI	GCTNAGC	2 cut(s)	23, 843
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	1226, 1326
Bme18I	GGWCC	2 cut(s)	416, 664
BmgBI	CACGTC	1 cut(s)	1432
BmgT120I	GGNCC	3 cut(s)	416, 588, 664
BmiI	GGNNCC	2 cut(s)	553, 589
BmrFI	CCNGG	2 cut(s)	1226, 1326
BmsI	GCATC	3 cut(s)	528, 794, 1221
BoxI	GACNNNNGTC	1 cut(s)	647
BpiI	GAAGAC	3 cut(s)	189, 261, 1336
BpmI	CTGGAG	3 cut(s)	285, 444, 603
Bpu10I	CCTNAGC	1 cut(s)	819
Bpu1102I	GCTNAGC	2 cut(s)	23, 843
Bpu14I	TTCGAA	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	1255
BsaHI	GRCGYC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	687, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 1116, 1144
Bse1I	ACTGG	4 cut(s)	284, 461, 1004, 1193
Bse3DI	GCAATG	4 cut(s)	258, 711, 975, 1066
BseBI	CCWGG	2 cut(s)	1226, 1326
BseDI	CCNNGG	2 cut(s)	687, 834
BseGI	GGATG	2 cut(s)	151, 519
BseLI	CCNNNNNNNGG	3 cut(s)	581, 1116, 1144
BseMI	GCAATG	4 cut(s)	258, 711, 975, 1066
BseMII	CTCAG	7 cut(s)	30, 344, 371, 465, 810, 834, 1143
BseNI	ACTGG	4 cut(s)	284, 461, 1004, 1193
BseRI	GAGGAG	6 cut(s)	150, 153, 290, 653, 1086, 1148
BseSI	GKGCMC	1 cut(s)	1151
BsgI	GTGCAG	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	689
BshFI	GGCC	5 cut(s)	297, 590, 707, 1224, 1324
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	3 cut(s)	88, 1083, 1158
BsiSI	CCGG	2 cut(s)	34, 555
BslI	CCNNNNNNNGG	3 cut(s)	581, 1116, 1144
BsmAI	GTCTC	6 cut(s)	139, 153, 360, 384, 440, 635
BsnI	GGCC	5 cut(s)	297, 590, 707, 1224, 1324
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	4 cut(s)	88, 1083, 1151, 1158
Bsp143I	GATC	2 cut(s)	343, 1180
Bsp1720I	GCTNAGC	2 cut(s)	23, 843
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	7 cut(s)	544, 549, 687, 689, 728, 924, 1035
BspANI	GGCC	5 cut(s)	297, 590, 707, 1224, 1324
BspCNI	CTCAG	7 cut(s)	31, 343, 370, 466, 811, 835, 1144
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	2 cut(s)	553, 589
BspMAI	CTGCAG	2 cut(s)	721, 829
BspMI	ACCTGC	1 cut(s)	75
BspQI	GCTCTTC	2 cut(s)	217, 1238
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	4 cut(s)	258, 711, 975, 1066
BsrI	ACTGG	4 cut(s)	284, 461, 1004, 1193
BssECI	CCNNGG	2 cut(s)	687, 834
BssMI	GATC	2 cut(s)	343, 1180
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	1386
BssT1I	CCWWGG	1 cut(s)	834
Bst2BI	CACGAG	1 cut(s)	1386
Bst2UI	CCWGG	2 cut(s)	1226, 1326
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	2 cut(s)	217, 1238
BstACI	GRCGYC	1 cut(s)	489
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	1255
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	8 cut(s)	23, 39, 330, 357, 474, 819, 843, 1152
BstDSI	CCRYGG	2 cut(s)	687, 834
BstF5I	GGATG	2 cut(s)	151, 519
BstFNI	CGCG	1 cut(s)	689
BstKTI	GATC	2 cut(s)	346, 1183
BstMAI	GTCTC	6 cut(s)	139, 153, 360, 384, 440, 635
BstMBI	GATC	2 cut(s)	343, 1180
BstNI	CCWGG	2 cut(s)	1226, 1326
BstNSI	RCATGY	1 cut(s)	1315
BstPAI	GACNNNNGTC	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	1224, 1324
BstSFI	CTRYAG	2 cut(s)	717, 825
BstSLI	GKGCMC	1 cut(s)	1151
BstUI	CGCG	1 cut(s)	689
BstV2I	GAAGAC	3 cut(s)	189, 261, 1336
BstXI	CCANNNNNNTGG	1 cut(s)	598
BsuRI	GGCC	5 cut(s)	297, 590, 707, 1224, 1324
BtgI	CCRYGG	2 cut(s)	687, 834
BtrI	CACGTC	1 cut(s)	1432
BtsCI	GGATG	2 cut(s)	151, 519
BtsI	GCAGTG	2 cut(s)	418, 1002
BtsIMutI	CAGTG	5 cut(s)	418, 1002, 1011, 1149, 1186
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	416, 588, 664
Cfr42I	CCGCGG	1 cut(s)	690
CseI	GACGC	3 cut(s)	729, 1346, 1447
Csp6I	GTAC	1 cut(s)	499
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	8 cut(s)	23, 39, 330, 357, 474, 819, 843, 1152
DpnI	GATC	2 cut(s)	345, 1182
DpnII	GATC	2 cut(s)	343, 1180
EaeI	YGGCCR	3 cut(s)	295, 705, 1322
Eam1104I	CTCTTC	2 cut(s)	217, 1238
EarI	CTCTTC	2 cut(s)	217, 1238
Ecl136II	GAGCTC	3 cut(s)	86, 1081, 1156
Eco130I	CCWWGG	1 cut(s)	834
Eco24I	GRGCYC	3 cut(s)	88, 1083, 1158
Eco47I	GGWCC	2 cut(s)	416, 664
Eco53kI	GAGCTC	3 cut(s)	86, 1081, 1156
Eco57I	CTGAAG	2 cut(s)	273, 720
EcoICRI	GAGCTC	3 cut(s)	86, 1081, 1156
EcoRII	CCWGG	2 cut(s)	1224, 1324
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	3 cut(s)	88, 1083, 1158
ErhI	CCWWGG	1 cut(s)	834
FalI	AAGNNNNNCTT	2 cut(s)	1122, 1154
FokI	GGATG	2 cut(s)	138, 506
FriOI	GRGCYC	3 cut(s)	88, 1083, 1158
FspBI	CTAG	2 cut(s)	1100, 1143
GsuI	CTGGAG	3 cut(s)	285, 444, 603
HaeIII	GGCC	5 cut(s)	297, 590, 707, 1224, 1324
HapII	CCGG	2 cut(s)	34, 555
HgaI	GACGC	3 cut(s)	729, 1346, 1447
Hin1I	GRCGYC	1 cut(s)	489
HinfI	GANTC	4 cut(s)	269, 648, 1023, 1029
HpaII	CCGG	2 cut(s)	34, 555
HphI	GGTGA	4 cut(s)	1064, 1205, 1240, 1261
Hpy166II	GTNNAC	4 cut(s)	416, 652, 667, 1437
Hpy188I	TCNGA	3 cut(s)	274, 475, 1028
Hpy188III	TCNNGA	4 cut(s)	128, 744, 896, 1100
Hpy8I	GTNNAC	4 cut(s)	416, 652, 667, 1437
Hpy99I	CGWCG	6 cut(s)	488, 491, 494, 902, 1346, 1362
HpyAV	CCTTC	3 cut(s)	183, 967, 1101
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	3 cut(s)	489, 1254, 1431
HpyCH4V	TGCA	8 cut(s)	180, 222, 659, 719, 827, 1186, 1305, 1319
HpyF3I	CTNAG	8 cut(s)	23, 39, 330, 357, 474, 819, 843, 1152
HpySE526I	ACGT	3 cut(s)	489, 1254, 1431
Hsp92I	GRCGYC	1 cut(s)	489
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	2 cut(s)	343, 1180
LguI	GCTCTTC	2 cut(s)	217, 1238
LmnI	GCTCC	4 cut(s)	91, 277, 839, 1161
LweI	GCATC	3 cut(s)	528, 794, 1221
MaeI	CTAG	2 cut(s)	1100, 1143
MaeII	ACGT	3 cut(s)	489, 1254, 1431
MaeIII	GTNAC	3 cut(s)	322, 1124, 1361
MalI	GATC	2 cut(s)	345, 1182
MboI	GATC	2 cut(s)	343, 1180
MhlI	GDGCHC	4 cut(s)	88, 1083, 1151, 1158
MlsI	TGGCCA	3 cut(s)	297, 707, 1324
MluNI	TGGCCA	3 cut(s)	297, 707, 1324
MlyI	GAGTC	3 cut(s)	278, 657, 1038
MmeI	TCCRAC	1 cut(s)	1275
Mox20I	TGGCCA	3 cut(s)	297, 707, 1324
MscI	TGGCCA	3 cut(s)	297, 707, 1324
MseI	TTAA	5 cut(s)	386, 495, 882, 938, 1492
MslI	CAYNNNNRTG	3 cut(s)	411, 779, 863
Msp20I	TGGCCA	3 cut(s)	297, 707, 1324
MspA1I	CMGCKG	6 cut(s)	549, 674, 689, 728, 920, 926
MspI	CCGG	2 cut(s)	34, 555
MspR9I	CCNGG	2 cut(s)	1226, 1326
MvaI	CCWGG	2 cut(s)	1226, 1326
MvnI	CGCG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	2 cut(s)	343, 1180
NlaIV	GGNNCC	2 cut(s)	553, 589
NspI	RCATGY	1 cut(s)	1315
NspV	TTCGAA	1 cut(s)	505
OliI	CACNNNNGTG	2 cut(s)	411, 863
PaqCI	CACCTGC	1 cut(s)	75
PciI	ACATGT	1 cut(s)	1311
PciSI	GCTCTTC	2 cut(s)	217, 1238
PcsI	WCGNNNNNNNCGW	2 cut(s)	489, 1401
PfeI	GAWTC	1 cut(s)	1023
PflFI	GACNNNGTC	1 cut(s)	488
PleI	GAGTC	3 cut(s)	277, 656, 1037
PpsI	GAGTC	3 cut(s)	277, 656, 1037
Ppu21I	YACGTR	1 cut(s)	1255
PscI	ACATGT	1 cut(s)	1311
PshAI	GACNNNNGTC	1 cut(s)	647
Psp124BI	GAGCTC	3 cut(s)	88, 1083, 1158
Psp6I	CCWGG	2 cut(s)	1224, 1324
PspGI	CCWGG	2 cut(s)	1224, 1324
PspN4I	GGNNCC	2 cut(s)	553, 589
PspPI	GGNCC	3 cut(s)	416, 588, 664
PstI	CTGCAG	2 cut(s)	721, 829
PsyI	GACNNNGTC	1 cut(s)	488
PvuII	CAGCTG	2 cut(s)	674, 920
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	3 cut(s)	411, 779, 863
SacI	GAGCTC	3 cut(s)	88, 1083, 1158
SacII	CCGCGG	1 cut(s)	690
SapI	GCTCTTC	2 cut(s)	217, 1238
SaqAI	TTAA	5 cut(s)	386, 495, 882, 938, 1492
Sau3AI	GATC	2 cut(s)	343, 1180
Sau96I	GGNCC	3 cut(s)	416, 588, 664
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	3 cut(s)	278, 657, 1038
ScrFI	CCNGG	2 cut(s)	1226, 1326
SduI	GDGCHC	4 cut(s)	88, 1083, 1151, 1158
SfaNI	GCATC	3 cut(s)	528, 794, 1221
SfcI	CTRYAG	2 cut(s)	717, 825
Sfr303I	CCGCGG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	505
SgrBI	CCGCGG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	416, 664
SmiMI	CAYNNNNRTG	3 cut(s)	411, 779, 863
SsiI	CCGC	7 cut(s)	544, 549, 687, 689, 728, 924, 1035
SspMI	CTAG	2 cut(s)	1100, 1143
SstI	GAGCTC	3 cut(s)	88, 1083, 1158
StyD4I	CCNGG	2 cut(s)	1224, 1324
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	3 cut(s)	492, 1257, 1434
TaqI	TCGA	3 cut(s)	505, 1341, 1404
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	4 cut(s)	546, 689, 731, 926
TfiI	GAWTC	1 cut(s)	1023
Tru1I	TTAA	5 cut(s)	386, 495, 882, 938, 1492
Tru9I	TTAA	5 cut(s)	386, 495, 882, 938, 1492
TscAI	CASTG	5 cut(s)	418, 1002, 1011, 1156, 1193
TspDTI	ATGAA	3 cut(s)	207, 986, 1256
TspRI	CASTG	5 cut(s)	418, 1002, 1011, 1156, 1193
Tth111I	GACNNNGTC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	416, 664
XbaI	TCTAGA	1 cut(s)	1099
XceI	RCATGY	1 cut(s)	1315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XspI	CTAG	2 cut(s)	1100, 1143
ZraI	GACGTC	1 cut(s)	490
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.