pycom03g20730

Auxin canalisation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
21165314 .. 21169904
4591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20730.6

Sequence Viewer

Length: 1512 bp
ATGGAAGAAACACTACCAATGTTAACCACTCGCCGGACTGACCAGAGTCCGGTCAACCACCGTGACCACCTCCCCAAAAGCCCAAGAGTTCCAATGGAGTTTCTCTCAAGGTCATGGAGTGCCTCTGCTCTTGAAGTCTCCAAAGCTCTGTCTCAGTCTCACCATCCTCCTCTGCCTCCTTCATGCATGGCTAATTCCAAGTCCTCAACCAACTCTTCCTCTTGCACCACCACCGCAACCACCACCACTCCTTCCATTCCTGAAGACATTGCCGAAAAAGCAGAGAAGCTGCAGGCGCTTCCCGTAAACCAATTTTACTTTGCTTCCTCTGTCACTTCCCAGCTCGTCCTTGACCGCATTATGTCACAGTCCATGAGAGAGGAATTGTCTCCATTGACATCAGGGAGGCTCTCACACAGCAGTGAACCTCTGAACAATGGTGGTTCTCTAGCAGAGACAGATAGCCTTCCAGTCTCTCCCTCCGATGAGTTCGACGACGTCGTTAAGTATTTTCGAACCCACAACAGCATACAAAACCTATTCAACGGCAGCCGTAGCAGCGCTGGAAATGGAAACAATGCCCCTAGCGGCGGAGCCAAGACGGTGGGGAGATGGCTGAAGGAGAGAAAAGAGAAGAAAAAGGAGGAGACAAGGGTGCACAATGCGCAGGTCCATGCTGCAGTTTCAGTTGCTGCGGTGGCTGCCGCTGTGGCCGCCACTGCTGCAGGCACGGCAGCTTCTTCAGGGTCAAGAAAGAACGATCAAGCAGGGAAGACAGACATGGCGGTGGCTTGTGCCGCCACGTTGGTAGCTGCTCAATGTGCTGAGGCTGCGGAGGCTATGGGAGCTGACCATGACCATCTTACTTCTGTCGTCAGCTCCGCCGTTAATGTTCGCTCTCGTGACGATATTACCACTCTCACTGCAGCTGCTGCCACAGCTTTACGAGGGGCAGCGACCCTAAAGGCAAGGGCAATGAAGGAGGCGTGGAACATATCCGCAGTGATTCCAGTGGAAAAGGGAATGGGAATCGGAGTCTGCGCTGGTAAAGCTAACAACAACAACGGTGGTGATCGCAGCAGCGGCAGCAGCAGCTTTAGTGACGATCTTGTCCCTGTTGACCCTACGTTTCTTGGGGTCTCTAACCAAGACCTCCTTGCTAGGGGCACTGAACTCCTCAAACGCACACGAAAAGGTGATCTCCACTGGAAACTAGTGTCTGTTTACATTCACCGAACCGGACAGGTGATGCTGAAAATGAAGAGCAAACACGTTGCAGGAACTTTCACCAAGAAGAAGAAGAATGTTGTGTTGGAGGTGTGCAAGAGCATGCCGGCATGGCCCGGGAGACACTTGTTCGACGACGGAGACCAGCGTCGTTACTTTGGGCTGAAGACAGAAGCGAGAGGCATTGTTGAGTTCGAGTGCAAGAACCAGAGAGAACACGACGTCTGGACTCGCGGCGTTTCGGGGCTGCTGTCTATTGTCGCCGACAGAAAGAGCAGGCATTGA

Protein Analysis

504

Amino Acids

53.96

Weight (kDa)

9.32

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1109
AatII GACGTC 2 cut(s) 501, 1452
Acc16I TGCGCA 1 cut(s) 666
Acc36I ACCTGC 1 cut(s) 658
AccII CGCG 1 cut(s) 1461
AcoI YGGCCR 1 cut(s) 711
AcuI CTGAAG 4 cut(s) 282, 638, 726, 1412
AcyI GRCGYC 2 cut(s) 498, 1449
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 4 cut(s) 33, 49, 590, 1162
AflIII ACRYGT 1 cut(s) 1270
AgsI TTSAA 2 cut(s) 134, 544
AhlI ACTAGT 1 cut(s) 1213
AjuI GAANNNNNNNTTGG 2 cut(s) 1295, 1327
AleI CACNNNNGTG 1 cut(s) 420
Alw21I GWGCWC 1 cut(s) 660
Alw44I GTGCAC 1 cut(s) 656
AlwNI CAGNNNCTG 2 cut(s) 692, 932
Ama87I CYCGRG 1 cut(s) 1343
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 711, 1340
ApaLI GTGCAC 1 cut(s) 656
AspLEI GCGC 4 cut(s) 298, 563, 667, 1043
AspS9I GGNCC 2 cut(s) 670, 1341
AsuC2I CCSGG 2 cut(s) 1344, 1345
AsuHPI GGTGA 6 cut(s) 152, 1082, 1208, 1223, 1258, 1279
AsuII TTCGAA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 1343
AvaII GGWCC 1 cut(s) 670
BaeGI GKGCMC 2 cut(s) 660, 1169
BarI GAAGNNNNNNTAC 1 cut(s) 29
BauI CACGAG 1 cut(s) 900
BbsI GAAGAC 3 cut(s) 270, 779, 1400
Bbv12I GWGCWC 1 cut(s) 660
BbvCI CCTCAGC 1 cut(s) 825
BccI CCATC 3 cut(s) 171, 606, 867
BceAI ACGGC 4 cut(s) 537, 562, 747, 869
BcnI CCSGG 2 cut(s) 1344, 1345
BcuI ACTAGT 1 cut(s) 1213
BfaI CTAG 4 cut(s) 449, 585, 1161, 1214
BfmI CTRYAG 4 cut(s) 290, 678, 723, 924
BfoI RGCGCY 2 cut(s) 299, 564
BfuAI ACCTGC 1 cut(s) 658
BglI GCCNNNNNGGC 2 cut(s) 710, 1339
Bme1390I CCNGG 2 cut(s) 1344, 1345
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 1343
BmgT120I GGNCC 2 cut(s) 670, 1341
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 2 cut(s) 1344, 1345
BmsI GCATC 1 cut(s) 1239
BoxI GACNNNNGTC 2 cut(s) 45, 1374
BpiI GAAGAC 3 cut(s) 270, 779, 1400
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 825
Bpu14I TTCGAA 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 2 cut(s) 1344, 1345
BsaHI GRCGYC 2 cut(s) 498, 1449
BsaI GGTCTC 2 cut(s) 1144, 1362
BsaJI CCNNGG 1 cut(s) 1343
BsaWI WCCGGW 2 cut(s) 49, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 49, 590, 1162
Bse118I RCCGGY 1 cut(s) 1333
Bse1I ACTGG 3 cut(s) 470, 1010, 1211
Bse3DI GCAATG 2 cut(s) 267, 981
BseDI CCNNGG 1 cut(s) 1343
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 4 cut(s) 33, 49, 590, 1162
BseMI GCAATG 2 cut(s) 267, 981
BseMII CTCAG 2 cut(s) 167, 816
BseNI ACTGG 3 cut(s) 470, 1010, 1211
BseRI GAGGAG 3 cut(s) 159, 659, 1166
BseSI GKGCMC 2 cut(s) 660, 1169
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 1461
BshFI GGCC 2 cut(s) 713, 1342
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 1343
BsiSI CCGG 5 cut(s) 34, 50, 1239, 1334, 1344
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 4 cut(s) 33, 49, 590, 1162
BsmFI GGGAC 1 cut(s) 1097
BsnI GGCC 2 cut(s) 713, 1342
Bso31I GGTCTC 2 cut(s) 1144, 1362
BsoBI CYCGRG 1 cut(s) 1343
Bsp119I TTCGAA 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 660, 1169
Bsp143I GATC 4 cut(s) 760, 1072, 1105, 1198
BspANI GGCC 2 cut(s) 713, 1342
BspCNI CTCAG 2 cut(s) 166, 817
BspFNI CGCG 1 cut(s) 1461
BspLI GGNNCC 1 cut(s) 595
BspMAI CTGCAG 4 cut(s) 294, 682, 727, 928
BspMI ACCTGC 1 cut(s) 658
BspQI GCTCTTC 1 cut(s) 1256
BspT104I TTCGAA 1 cut(s) 514
BspTNI GGTCTC 2 cut(s) 1144, 1362
BsrDI GCAATG 2 cut(s) 267, 981
BsrFI RCCGGY 1 cut(s) 1333
BsrI ACTGG 3 cut(s) 470, 1010, 1211
BssAI RCCGGY 1 cut(s) 1333
BssECI CCNNGG 1 cut(s) 1343
BssMI GATC 4 cut(s) 760, 1072, 1105, 1198
BssNI GRCGYC 2 cut(s) 498, 1449
BssSI CACGAG 1 cut(s) 900
Bst2BI CACGAG 1 cut(s) 900
Bst4CI ACNGT 4 cut(s) 62, 369, 604, 1067
Bst6I CTCTTC 2 cut(s) 220, 1256
BstACI GRCGYC 2 cut(s) 498, 1449
BstAPI GCANNNNNTGC 1 cut(s) 932
BstBI TTCGAA 1 cut(s) 514
BstC8I GCNNGC 5 cut(s) 294, 727, 1331, 1335, 1505
BstDEI CTNAG 2 cut(s) 153, 825
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 1461
BstH2I RGCGCY 2 cut(s) 299, 564
BstHHI GCGC 4 cut(s) 298, 563, 667, 1043
BstKTI GATC 4 cut(s) 763, 1075, 1108, 1201
BstMBI GATC 4 cut(s) 760, 1072, 1105, 1198
BstNSI RCATGY 1 cut(s) 1333
BstPAI GACNNNNGTC 2 cut(s) 45, 1374
BstSCI CCNGG 2 cut(s) 1342, 1343
BstSFI CTRYAG 4 cut(s) 290, 678, 723, 924
BstSLI GKGCMC 2 cut(s) 660, 1169
BstUI CGCG 1 cut(s) 1461
BstV2I GAAGAC 3 cut(s) 270, 779, 1400
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuRI GGCC 2 cut(s) 713, 1342
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 4 cut(s) 427, 717, 921, 1008
BtsIMutI CAGTG 7 cut(s) 427, 717, 921, 1008, 1017, 1167, 1204
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 5 cut(s) 294, 727, 1331, 1335, 1505
CaiI CAGNNNCTG 2 cut(s) 692, 932
CfoI GCGC 4 cut(s) 298, 563, 667, 1043
Cfr10I RCCGGY 1 cut(s) 1333
Cfr13I GGNCC 2 cut(s) 670, 1341
Cfr9I CCCGGG 1 cut(s) 1343
CseI GACGC 1 cut(s) 1364
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 9 cut(s) 114, 183, 187, 373, 674, 781, 854, 1330, 1338
DdeI CTNAG 2 cut(s) 153, 825
DpnI GATC 4 cut(s) 762, 1074, 1107, 1200
DpnII GATC 4 cut(s) 760, 1072, 1105, 1198
DrdI GACNNNNNNGTC 1 cut(s) 1109
DseDI GACNNNNNNGTC 1 cut(s) 1109
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 220, 1256
EarI CTCTTC 2 cut(s) 220, 1256
EciI GGCGGA 2 cut(s) 606, 871
Eco31I GGTCTC 2 cut(s) 1144, 1362
Eco47I GGWCC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 562
Eco57I CTGAAG 4 cut(s) 282, 638, 726, 1412
Eco88I CYCGRG 1 cut(s) 1343
EcoT22I ATGCAT 1 cut(s) 188
FaeI CATG 9 cut(s) 117, 186, 190, 376, 677, 784, 857, 1333, 1341
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FaqI GGGAC 1 cut(s) 1097
FatI CATG 9 cut(s) 113, 182, 186, 372, 673, 780, 853, 1329, 1337
FokI GGATG 1 cut(s) 150
FspBI CTAG 4 cut(s) 449, 585, 1161, 1214
FspI TGCGCA 1 cut(s) 666
GlaI GCGC 4 cut(s) 297, 562, 666, 1042
GsaI CCCAGC 1 cut(s) 343
HaeII RGCGCY 2 cut(s) 299, 564
HaeIII GGCC 2 cut(s) 713, 1342
HapII CCGG 5 cut(s) 34, 50, 1239, 1334, 1344
HgaI GACGC 1 cut(s) 1364
HhaI GCGC 4 cut(s) 298, 563, 667, 1043
Hin1I GRCGYC 2 cut(s) 498, 1449
Hin1II CATG 9 cut(s) 117, 186, 190, 376, 677, 784, 857, 1333, 1341
Hin6I GCGC 4 cut(s) 296, 561, 665, 1041
HinP1I GCGC 4 cut(s) 296, 561, 665, 1041
HincII GTYRAC 3 cut(s) 24, 55, 1120
HindII GTYRAC 3 cut(s) 24, 55, 1120
HinfI GANTC 5 cut(s) 46, 1006, 1029, 1035, 1456
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 5 cut(s) 34, 50, 1239, 1334, 1344
HphI GGTGA 6 cut(s) 152, 1082, 1208, 1223, 1258, 1279
Hpy166II GTNNAC 7 cut(s) 24, 55, 307, 425, 658, 1120, 1225
Hpy188I TCNGA 3 cut(s) 432, 484, 1034
Hpy188III TCNNGA 5 cut(s) 131, 260, 750, 902, 1453
Hpy8I GTNNAC 7 cut(s) 24, 55, 307, 425, 658, 1120, 1225
Hpy99I CGWCG 7 cut(s) 497, 500, 503, 1364, 1367, 1380, 1451
HpyAV CCTTC 5 cut(s) 189, 261, 476, 613, 973
HpyCH4III ACNGT 4 cut(s) 62, 369, 604, 1067
HpyCH4IV ACGT 5 cut(s) 498, 803, 1127, 1272, 1449
HpyF3I CTNAG 2 cut(s) 153, 825
HpySE526I ACGT 5 cut(s) 498, 803, 1127, 1272, 1449
Hsp92I GRCGYC 2 cut(s) 498, 1449
Hsp92II CATG 9 cut(s) 117, 186, 190, 376, 677, 784, 857, 1333, 1341
HspAI GCGC 4 cut(s) 296, 561, 665, 1041
KroI GCCGGC 1 cut(s) 1333
KroNI GCCGGC 1 cut(s) 1335
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 4 cut(s) 760, 1072, 1105, 1198
LguI GCTCTTC 1 cut(s) 1256
LmnI GCTCC 3 cut(s) 593, 845, 884
LweI GCATC 1 cut(s) 1239
MaeI CTAG 4 cut(s) 449, 585, 1161, 1214
MaeII ACGT 5 cut(s) 498, 803, 1127, 1272, 1449
MaeIII GTNAC 6 cut(s) 62, 331, 363, 902, 1100, 1379
MalI GATC 4 cut(s) 762, 1074, 1107, 1200
MboI GATC 4 cut(s) 760, 1072, 1105, 1198
MhlI GDGCHC 2 cut(s) 660, 1169
MluCI AATT 3 cut(s) 193, 311, 383
MlyI GAGTC 3 cut(s) 55, 1044, 1450
MmeI TCCRAC 1 cut(s) 1293
Mph1103I ATGCAT 1 cut(s) 188
MroNI GCCGGC 1 cut(s) 1333
MseI TTAA 3 cut(s) 23, 504, 888
MslI CAYNNNNRTG 2 cut(s) 420, 785
MspA1I CMGCKG 3 cut(s) 707, 929, 1083
MspI CCGG 5 cut(s) 34, 50, 1239, 1334, 1344
MspR9I CCNGG 2 cut(s) 1344, 1345
MvnI CGCG 1 cut(s) 1461
NaeI GCCGGC 1 cut(s) 1335
NciI CCSGG 2 cut(s) 1344, 1345
NdeII GATC 4 cut(s) 760, 1072, 1105, 1198
NgoMIV GCCGGC 1 cut(s) 1333
NlaIII CATG 9 cut(s) 117, 186, 190, 376, 677, 784, 857, 1333, 1341
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 5 cut(s) 62, 331, 363, 902, 1100
NsbI TGCGCA 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 1 cut(s) 1333
NspV TTCGAA 1 cut(s) 514
OliI CACNNNNGTG 1 cut(s) 420
PaeI GCATGC 1 cut(s) 1333
PciSI GCTCTTC 1 cut(s) 1256
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdiI GCCGGC 1 cut(s) 1335
PfeI GAWTC 2 cut(s) 1006, 1029
PflFI GACNNNGTC 1 cut(s) 497
PleI GAGTC 3 cut(s) 54, 1043, 1450
PpsI GAGTC 3 cut(s) 54, 1043, 1450
PshAI GACNNNNGTC 2 cut(s) 45, 1374
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 670, 1341
PstI CTGCAG 4 cut(s) 294, 682, 727, 928
PstNI CAGNNNCTG 2 cut(s) 692, 932
PsyI GACNNNGTC 1 cut(s) 497
PvuII CAGCTG 1 cut(s) 929
RseI CAYNNNNRTG 2 cut(s) 420, 785
SapI GCTCTTC 1 cut(s) 1256
SaqAI TTAA 3 cut(s) 23, 504, 888
Sau3AI GATC 4 cut(s) 760, 1072, 1105, 1198
Sau96I GGNCC 2 cut(s) 670, 1341
SchI GAGTC 3 cut(s) 55, 1044, 1450
ScrFI CCNGG 2 cut(s) 1344, 1345
SduI GDGCHC 2 cut(s) 660, 1169
SfaNI GCATC 1 cut(s) 1239
SfcI CTRYAG 4 cut(s) 290, 678, 723, 924
SfuI TTCGAA 1 cut(s) 514
SinI GGWCC 1 cut(s) 670
SmaI CCCGGG 1 cut(s) 1345
SmiMI CAYNNNNRTG 2 cut(s) 420, 785
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SpeI ACTAGT 1 cut(s) 1213
SphI GCATGC 1 cut(s) 1333
Sse9I AATT 3 cut(s) 193, 311, 383
SspMI CTAG 4 cut(s) 449, 585, 1161, 1214
StyD4I CCNGG 2 cut(s) 1342, 1343
TaaI ACNGT 4 cut(s) 62, 369, 604, 1067
TaiI ACGT 5 cut(s) 501, 806, 1130, 1275, 1452
TaqI TCGA 4 cut(s) 492, 514, 1359, 1422
TasI AATT 3 cut(s) 193, 311, 383
TauI GCSGC 6 cut(s) 591, 707, 716, 800, 1086, 1464
TfiI GAWTC 2 cut(s) 1006, 1029
Tru1I TTAA 3 cut(s) 23, 504, 888
Tru9I TTAA 3 cut(s) 23, 504, 888
TscAI CASTG 7 cut(s) 427, 724, 928, 1008, 1017, 1174, 1211
TseFI GTSAC 5 cut(s) 62, 331, 363, 902, 1100
Tsp45I GTSAC 5 cut(s) 62, 331, 363, 902, 1100
TspDTI ATGAA 3 cut(s) 171, 992, 1274
TspGWI ACGGA 1 cut(s) 1380
TspMI CCCGGG 1 cut(s) 1343
TspRI CASTG 7 cut(s) 427, 724, 928, 1008, 1017, 1174, 1211
Tth111I GACNNNGTC 1 cut(s) 497
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 670
XceI RCATGY 1 cut(s) 1333
XmaI CCCGGG 1 cut(s) 1343
XspI CTAG 4 cut(s) 449, 585, 1161, 1214
ZraI GACGTC 2 cut(s) 499, 1450
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.