Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024712.1

Orthogroup ID

OG0009825

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2719

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024712.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ttcttccgcaaccacaacagcataaaccagctgttcaacaacggcagtcggagcagcgctgtaaatgtcagtagtacccctgccaccgggggagccaagacagttgggagatggttgaaggatcgaaaagagaagaaaaaggaggagactagagtccacaatgctcaagtccacgcagccgtttcagttgccgcagtttctgctgctgtagctgccattgcggcagccacagccgcttcttcttcaacttcatcaagaaagaacaacgaacaagcggccaagactgatatggctgtggcatctgctgctacgttggtagctgcacaatgtgctgaagctgcagaggctatgggagctgagcatgaccatcttacttctgtggttagctctgcagtcaatgttcgctctcatgatgatattaccactctcactgctgccgctgccacagctttaagaggtgcagcgacactcaaggcaagggcaatgaaggaggtgtggaacatagcagcagtgataccagtggaaaaaggaatgggaatcggggtctgtggtaaaggcaataacaacagcaatggcagctttagtagcagtgaagagcttgttcctgctcctaacacttttcttggggcctctaaccaagacctgcttgctaggggaactgaactcctcaaacgcacccgaaaagatgttgtgttggaagtgtgcaagaacatgccggcatggcctgggaggcacttgttcgagggtggagagcagcgccgttactttggactgaaaacagaatcgcgaggagtcgtggagtttgagtgcaagaatcagagggaacatgacgtctggactcatggagtttcgaggctgctctctattgtagccgagagaaagaacatgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010051 GO:0010087 GO:0010305 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

297

Amino Acids

31.57

Weight (kDa)

9.54

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63300 AT3G63300
fragaria_vesca	FvH4_2g23080
malus_domestica	MD03G1259300.v1.1 MD11G1279900.v1.1
prunus_persica	Prupe.8G235800_v2.0.a1 Prupe.8G235800_v2.0.a1
pyrus_communis	pycom03g20730 pycom11g24760
rosa_chinensis	RchiOBHm_Chr6g0290221
rosa_laevigata	RLG00000012233
rosa_multiflora	Rmu_co8342515.1_g000001 Rmu_sc0002902.1_g000011 Rmu_sc0024712.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177230
rosa_rugosa	Rorug06G0211000.1
rosa_samantha	Rh6AG321300 Rh6BG328400 Rh6CG334400 Rh6DG321400
rosa_wichuraiana	Rw6G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	834
Acc36I	ACCTGC	1 cut(s)	651
AccII	CGCG	1 cut(s)	787
AciI	CCGC	6 cut(s)	7, 192, 221, 234, 275, 438
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	831
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	76
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	37, 118, 246
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	9 cut(s)	31, 212, 320, 338, 356, 387, 449, 579, 598
AluI	AGCT	9 cut(s)	31, 212, 320, 338, 356, 387, 449, 579, 598
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	3 cut(s)	276, 627, 722
AspLEI	GCGC	2 cut(s)	59, 759
AspS9I	GGNCC	1 cut(s)	627
AsuC2I	CCSGG	1 cut(s)	88
BccI	CCATC	2 cut(s)	105, 375
BceAI	ACGGC	3 cut(s)	58, 164, 744
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	150, 651
BfmI	CTRYAG	3 cut(s)	207, 339, 390
BfoI	RGCGCY	2 cut(s)	60, 760
BfuAI	ACCTGC	1 cut(s)	651
BglI	GCCNNNNNGGC	3 cut(s)	221, 721, 730
BlpI	GCTNAGC	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	88, 726
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	94, 628
BmrFI	CCNGG	2 cut(s)	88, 726
BmsI	GCATC	1 cut(s)	308
BoxI	GACNNNNGTC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	150, 455
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	87, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	3 cut(s)	216, 489, 577
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	87, 725
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	3 cut(s)	216, 489, 577
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	3 cut(s)	158, 656, 804
BsgI	GTGCAG	2 cut(s)	306, 480
Bsh1236I	CGCG	1 cut(s)	787
BshFI	GGCC	3 cut(s)	278, 629, 724
BsiSI	CCGG	2 cut(s)	87, 716
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	278, 629, 724
Bsp143I	GATC	1 cut(s)	121
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	787
BspACI	CCGC	6 cut(s)	7, 192, 221, 234, 275, 438
BspANI	GGCC	3 cut(s)	278, 629, 724
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	787
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	94, 628
BspMAI	CTGCAG	2 cut(s)	343, 394
BspMI	ACCTGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	588
BsrDI	GCAATG	3 cut(s)	216, 489, 577
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	87, 725
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	831
BstAPI	GCANNNNNTGC	3 cut(s)	200, 305, 329
BstC8I	GCNNGC	2 cut(s)	648, 717
BstDEI	CTNAG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	787
BstH2I	RGCGCY	2 cut(s)	60, 760
BstHHI	GCGC	2 cut(s)	59, 759
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	2 cut(s)	715, 889
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	86, 724
BstSFI	CTRYAG	3 cut(s)	207, 339, 390
BstUI	CGCG	1 cut(s)	787
BsuRI	GGCC	3 cut(s)	278, 629, 724
BtsI	GCAGTG	3 cut(s)	429, 516, 595
BtsIMutI	CAGTG	4 cut(s)	429, 516, 525, 595
BtuMI	TCGCGA	1 cut(s)	787
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	2 cut(s)	648, 717
CaiI	CAGNNNCTG	1 cut(s)	200
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	59, 759
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	7 cut(s)	362, 410, 712, 720, 827, 842, 886
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco47III	AGCGCT	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	724
EcoT22I	ATGCAT	1 cut(s)	891
FaeI	CATG	7 cut(s)	365, 413, 715, 723, 830, 845, 889
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FatI	CATG	7 cut(s)	361, 409, 711, 719, 826, 841, 885
FspBI	CTAG	2 cut(s)	150, 651
GlaI	GCGC	2 cut(s)	58, 758
HaeII	RGCGCY	2 cut(s)	60, 760
HaeIII	GGCC	3 cut(s)	278, 629, 724
HapII	CCGG	2 cut(s)	87, 716
HhaI	GCGC	2 cut(s)	59, 759
Hin1I	GRCGYC	1 cut(s)	831
Hin1II	CATG	7 cut(s)	365, 413, 715, 723, 830, 845, 889
Hin6I	GCGC	2 cut(s)	57, 757
HinP1I	GCGC	2 cut(s)	57, 757
HinfI	GANTC	6 cut(s)	153, 537, 782, 792, 814, 838
HpaII	CCGG	2 cut(s)	87, 716
Hpy166II	GTNNAC	2 cut(s)	157, 172
Hpy188I	TCNGA	2 cut(s)	51, 819
Hpy188III	TCNNGA	4 cut(s)	255, 410, 786, 835
Hpy8I	GTNNAC	2 cut(s)	157, 172
HpyAV	CCTTC	2 cut(s)	112, 481
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	311, 831
HpyCH4V	TGCA	7 cut(s)	323, 341, 392, 461, 705, 810, 889
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	2 cut(s)	311, 831
Hsp92I	GRCGYC	1 cut(s)	831
Hsp92II	CATG	7 cut(s)	365, 413, 715, 723, 830, 845, 889
HspAI	GCGC	2 cut(s)	57, 757
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	4 cut(s)	51, 92, 353, 613
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	2 cut(s)	150, 651
MaeII	ACGT	2 cut(s)	311, 831
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	145, 231, 234, 605
MlyI	GAGTC	3 cut(s)	162, 801, 832
MmeI	TCCRAC	2 cut(s)	29, 675
Mph1103I	ATGCAT	1 cut(s)	891
MroNI	GCCGGC	1 cut(s)	715
MseI	TTAA	2 cut(s)	452, 892
MspA1I	CMGCKG	2 cut(s)	31, 440
MspI	CCGG	2 cut(s)	87, 716
MspR9I	CCNGG	2 cut(s)	88, 726
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	787
NaeI	GCCGGC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	715
NlaIII	CATG	7 cut(s)	365, 413, 715, 723, 830, 845, 889
NlaIV	GGNNCC	2 cut(s)	94, 628
NruI	TCGCGA	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	2 cut(s)	715, 889
PagI	TCATGA	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	588
PdiI	GCCGGC	1 cut(s)	717
PfeI	GAWTC	3 cut(s)	537, 782, 814
PleI	GAGTC	3 cut(s)	161, 800, 832
PpsI	GAGTC	3 cut(s)	161, 800, 832
PshAI	GACNNNNGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	94, 628
PspPI	GGNCC	1 cut(s)	627
PstI	CTGCAG	2 cut(s)	343, 394
PstNI	CAGNNNCTG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	787
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	452, 892
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	3 cut(s)	162, 801, 832
ScrFI	CCNGG	2 cut(s)	88, 726
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	3 cut(s)	207, 339, 390
SmlI	CTYRAG	2 cut(s)	165, 470
SmoI	CTYRAG	2 cut(s)	165, 470
SsiI	CCGC	6 cut(s)	7, 192, 221, 234, 275, 438
SspMI	CTAG	2 cut(s)	150, 651
StyD4I	CCNGG	2 cut(s)	86, 724
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	314, 834
TaqI	TCGA	3 cut(s)	124, 741, 851
TauI	GCSGC	5 cut(s)	194, 224, 236, 278, 440
TfiI	GAWTC	3 cut(s)	537, 782, 814
Tru1I	TTAA	2 cut(s)	452, 892
Tru9I	TTAA	2 cut(s)	452, 892
TscAI	CASTG	4 cut(s)	436, 516, 525, 595
TspDTI	ATGAA	2 cut(s)	240, 500
TspRI	CASTG	4 cut(s)	436, 516, 525, 595
XceI	RCATGY	2 cut(s)	715, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	150, 651
ZraI	GACGTC	1 cut(s)	832
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.