Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016172

Physical Location & Seq

Genomic Coordinates Forward (+)

19139176 .. 19143073

Gene Structure 3898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACTACGATTCGGAGATTTTGCTGCAATGATCTGCTTCGTTTCACTTCGGTCAATCTCGACCACCTCACTGAGACTTTCAATATGTCGTTCTATATGACCTATTTGGCGAGATGGCCCGACTATTTTCACGTCGCCGAAGCCCCCGGAAATCGAATCATGGGTTACATTATGGGGAAGGTTGAAGGGCAAGGTGAGTCGTGGCATGGTCATGTGACTGCGGTGACTGTTTCTCCTGAATATCGGAGGCAGCAACTGGCGAAGAAGCTCATGAACCTACTTGAAGACTTCAGCGATAAGATTGACAAGGGTTACTTTGTTGATCTTTTTGTGAGAGCATCAAATACTCCAGCCATAAAGATGTATGAGAAGCTTGGTTATATAATCTATAGACGAGTGCTACGGTATTATTCAGGGGAAGAAGATGGATTAGATATGAGAAAAGCATTATCTCGGGATGTTGAAAGGAAATCAGTCATACCCCTCAAAAGGCCAGTTACTCCTGATGAATTAGAGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

175

Amino Acids

20.47

Weight (kDa)

7.75

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	26 - 127	1.8e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	40 - 128	1.2e-10	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	41 - 128	2.4e-12	Acetyltransferase (GNAT) domain
FR47	PF08445	70 - 131	9.6e-08	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03150
fragaria_vesca	FvH4_2g23390
malus_domestica	MD03G1263400.v1.1 MD11G1284200.v1.1
prunus_persica	Prupe.8G239800_v2.0.a1
pyrus_communis	pycom03g21090 pycom11g25160
rosa_chinensis	RchiOBHm_Chr6g0290851
rosa_laevigata	RLG00000012168
rosa_multiflora	Rmu_sc0009276.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176690
rosa_rugosa	Rorug06G0215200 Rorug06G0215300
rosa_samantha	Rh6AG325800
rosa_wichuraiana	Rw6G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	82, 185, 284, 464
AjiI	CACGTC	1 cut(s)	133
AluBI	AGCT	2 cut(s)	268, 373
AluI	AGCT	2 cut(s)	268, 373
Alw26I	GTCTC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	116, 491
ApeKI	GCWGC	2 cut(s)	24, 250
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	206, 235
AvaI	CYCGRG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	11, 262
BccI	CCATC	2 cut(s)	108, 419
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	2 cut(s)	25, 251
BlsI	GCNGC	2 cut(s)	26, 252
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	261, 494
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	261, 494
BseXI	GCAGC	2 cut(s)	11, 262
BshFI	GGCC	2 cut(s)	118, 493
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	118, 493
BsoBI	CYCGRG	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	31, 322
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	118, 493
BspCNI	CTCAG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	261, 494
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	31, 322
Bst4CI	ACNGT	2 cut(s)	229, 405
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	34, 325
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	31, 322
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	11, 262
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	118, 493
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	4 cut(s)	160, 206, 212, 271
CviJI	RGCY	6 cut(s)	118, 143, 268, 353, 373, 493
CviKI_1	RGCY	6 cut(s)	118, 143, 268, 353, 373, 493
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	33, 324
DpnII	GATC	2 cut(s)	31, 322
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	453
FaeI	CATG	4 cut(s)	163, 209, 215, 274
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	4 cut(s)	159, 205, 211, 270
Fnu4HI	GCNGC	2 cut(s)	25, 251
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	25, 251
GluI	GCNGC	2 cut(s)	25, 251
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	118, 493
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	4 cut(s)	163, 209, 215, 274
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	10, 156, 197
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	206, 235
Hpy188I	TCNGA	2 cut(s)	15, 246
Hpy188III	TCNNGA	5 cut(s)	59, 236, 271, 455, 503
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	172, 179
HpyCH4III	ACNGT	2 cut(s)	229, 405
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	163, 209, 215, 274
Kzo9I	GATC	2 cut(s)	31, 322
LpnPI	CCDG	7 cut(s)	160, 242, 249, 363, 399, 507, 516
Lsp1109I	GCAGC	2 cut(s)	11, 262
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	5 cut(s)	164, 214, 223, 311, 496
MalI	GATC	2 cut(s)	33, 324
MboI	GATC	2 cut(s)	31, 322
MboII	GAAGA	4 cut(s)	274, 296, 431, 434
MluCI	AATT	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	77, 240, 494
MslI	CAYNNNNRTG	2 cut(s)	210, 359
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	31, 322
NlaIII	CATG	4 cut(s)	163, 209, 215, 274
NmuCI	GTSAC	2 cut(s)	214, 223
PagI	TCATGA	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	10, 156
PkrI	GCNGC	2 cut(s)	26, 252
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	256
RseI	CAYNNNNRTG	2 cut(s)	210, 359
SatI	GCNGC	2 cut(s)	25, 251
Sau3AI	GATC	2 cut(s)	31, 322
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	8 cut(s)	69, 104, 135, 183, 196, 270, 279, 375
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	210, 359
Sse9I	AATT	1 cut(s)	509
SsiI	CCGC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	229, 405
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	60, 154
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	10, 156
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	214, 223
TseI	GCWGC	2 cut(s)	24, 250
Tsp45I	GTSAC	2 cut(s)	214, 223
TspDTI	ATGAA	2 cut(s)	287, 522
TspRI	CASTG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.