Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016172

Physical Location & Seq

Genomic Coordinates Reverse (-)

34377265 .. 34378703

Gene Structure 1439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGAAAAACTCAAATATGGCTGCAATTTTTCTTTTCCTTCTTCTTCTTCTTCAAGTTGCAGCTGCTCAACAAGGGAATATCAGCCTAGGTGCTTCTCTATATCCCAATAACAACTCATACTGGTTATCGAATTCGGGTCAGTTTGCTTTTGGCTTCTACAGGCAAGGAAATGACCTTGCTGTAGGCATCTGGTTCGAGAAAACCAATCCGAAAACAGTCATCTGGACAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTCAATTGACTGTGAGGGACAGTGGAGTTGAGCTCAGTTCAACCAGCAAGAATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTTTCAGGGCCGCCATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAAGATCATTTGGCAGACTTTTGATGTTCCAACAGATACCATTGTATCGGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCATCTCAAACATGAATCACGCAAGTGGAAGGTTTCAGGTGATCATGCAGAGTGATGGCAACCTAGTTCAGTATCCAGTTGGTCCATTTACATTGAGTACTGATCAATATGCTTATTGGGCCTCTGGGACAGTCGGAGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGGGGGGCTCTATCTTCTTAATTCCACTGGTTTCAAGATAAAAAGTATTGCCGGTCAGCAAGGCCTTTCTATGTATCGTGGCTATCGTCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTGGTTAAGAATGGTTCCTGGTCAATTGAGTGGTCATCAACTGATAATAAGTGTGCTCCTCTTGGCCTCTGTGGCCTAAATTCTTATTGTGTACTTGTGGAACAGGAACCTTCTTGTGTATGTCTCCCTGGTTTCACTTTCATCGACGAGGGCCAAAGATATTTAGGCTGCAAGAGAAACTTGAGTGCAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGCTGATGTGGATAACATAGATTGGGAAAACACTCCATACTCTATTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGTAACTGTGAAGTTGCAGTATTTAGGGACCAACAGTGCAAAAAACAAAAACTTCCCCTAAGATTTGGAAGAACTGGCCCAACCGATATGGCGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTACAAATAGGGTGAGCAAGGGAAGAAAAAAAGTTGAAATTGTTGTAAATAGTTATTATTTAGTGGGCATTCTTGTAATTATCCAATTAGGGATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

453

Amino Acids

49.67

Weight (kDa)

7.37

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	72 - 160	2.6e-12	D-mannose binding lectin
S_locus_glycop	PF00954	253 - 315	2e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03150
fragaria_vesca	FvH4_2g23390
malus_domestica	MD03G1263400.v1.1 MD11G1284200.v1.1
prunus_persica	Prupe.8G239800_v2.0.a1
pyrus_communis	pycom03g21090 pycom11g25160
rosa_chinensis	RchiOBHm_Chr6g0290851
rosa_laevigata	RLG00000012168
rosa_multiflora	Rmu_sc0009276.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176690
rosa_rugosa	Rorug06G0215200 Rorug06G0215300
rosa_samantha	Rh6AG325800
rosa_wichuraiana	Rw6G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	372, 1217
AcsI	RAATTY	3 cut(s)	130, 346, 886
AfaI	GTAC	5 cut(s)	601, 797, 900, 1243, 1264
AgsI	TTSAA	7 cut(s)	53, 275, 312, 345, 417, 709, 1298
AjnI	CCWGG	2 cut(s)	824, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AleI	CACNNNNGTG	1 cut(s)	525
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
AluBI	AGCT	4 cut(s)	62, 304, 493, 641
AluI	AGCT	4 cut(s)	62, 304, 493, 641
Alw21I	GWGCWC	2 cut(s)	306, 865
Alw26I	GTCTC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	475
AoxI	GGCC	7 cut(s)	369, 621, 736, 871, 880, 958, 1201
ApeKI	GCWGC	5 cut(s)	20, 59, 62, 469, 975
ApoI	RAATTY	3 cut(s)	130, 346, 886
Asp700I	GAANNNNTTC	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	85
AspS9I	GGNCC	6 cut(s)	369, 584, 621, 958, 1153, 1202
AsuHPI	GGTGA	4 cut(s)	553, 1022, 1231, 1285
AvaII	GGWCC	2 cut(s)	584, 1153
AvrII	CCTAGG	1 cut(s)	85
BaeI	ACNNNNGTAYC	4 cut(s)	444, 444, 477, 477
BanII	GRGCYC	2 cut(s)	306, 684
Bbv12I	GWGCWC	2 cut(s)	306, 865
BbvI	GCAGC	5 cut(s)	7, 49, 71, 481, 962
BccI	CCATC	4 cut(s)	512, 551, 773, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	826, 936
BciVI	GTATCC	1 cut(s)	585
BclI	TGATCA	3 cut(s)	543, 604, 667
BcoDI	GTCTC	1 cut(s)	935
BfaI	CTAG	2 cut(s)	86, 566
BfmI	CTRYAG	3 cut(s)	157, 180, 802
BfuI	GTATCC	1 cut(s)	585
BglI	GCCNNNNNGGC	1 cut(s)	879
BisI	GCNGC	6 cut(s)	21, 60, 63, 372, 470, 976
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	6 cut(s)	22, 61, 64, 373, 471, 977
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	826, 936
Bme18I	GGWCC	2 cut(s)	584, 1153
BmgT120I	GGNCC	6 cut(s)	369, 584, 621, 958, 1153, 1202
BmiI	GGNNCC	3 cut(s)	823, 915, 1154
BmrFI	CCNGG	2 cut(s)	826, 936
BmsI	GCATC	3 cut(s)	195, 229, 763
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpuEI	CTTGAG	1 cut(s)	1009
BsaJI	CCNNGG	2 cut(s)	85, 934
BsaWI	WCCGGW	1 cut(s)	789
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	4 cut(s)	125, 578, 706, 1204
BseBI	CCWGG	2 cut(s)	826, 936
BseDI	CCNNGG	2 cut(s)	85, 934
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	4 cut(s)	125, 578, 706, 1204
BseRI	GAGGAG	2 cut(s)	490, 855
BseXI	GCAGC	5 cut(s)	7, 49, 71, 481, 962
BseYI	CCCAGC	2 cut(s)	354, 641
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	7 cut(s)	371, 623, 738, 873, 882, 960, 1203
BsiHKAI	GWGCWC	2 cut(s)	306, 865
BsiSI	CCGG	2 cut(s)	726, 790
BslFI	GGGAC	4 cut(s)	302, 640, 643, 1166
BsmAI	GTCTC	1 cut(s)	935
BsmFI	GGGAC	4 cut(s)	302, 640, 643, 1166
BsmI	GAATGC	2 cut(s)	328, 1329
BsnI	GGCC	7 cut(s)	371, 623, 738, 873, 882, 960, 1203
Bsp1286I	GDGCHC	3 cut(s)	306, 684, 865
Bsp143I	GATC	4 cut(s)	420, 543, 604, 667
BspACI	CCGC	2 cut(s)	372, 1217
BspANI	GGCC	7 cut(s)	371, 623, 738, 873, 882, 960, 1203
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	3 cut(s)	823, 915, 1154
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	4 cut(s)	125, 578, 706, 1204
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	85, 934
BssMI	GATC	4 cut(s)	420, 543, 604, 667
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	826, 936
Bst4CI	ACNGT	8 cut(s)	217, 283, 293, 634, 806, 1115, 1133, 1161
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	305, 1184
BstKTI	GATC	4 cut(s)	423, 546, 607, 670
BstMAI	GTCTC	1 cut(s)	935
BstMBI	GATC	4 cut(s)	420, 543, 604, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 620, 879
BstNI	CCWGG	2 cut(s)	826, 936
BstSCI	CCNGG	2 cut(s)	824, 934
BstSFI	CTRYAG	3 cut(s)	157, 180, 802
BstV1I	GCAGC	5 cut(s)	7, 49, 71, 481, 962
BsuI	GTATCC	1 cut(s)	585
BsuRI	GGCC	7 cut(s)	371, 623, 738, 873, 882, 960, 1203
BtsIMutI	CAGTG	3 cut(s)	298, 699, 1166
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	6 cut(s)	369, 584, 621, 958, 1153, 1202
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	5 cut(s)	600, 796, 899, 1242, 1263
CviAII	CATG	3 cut(s)	376, 514, 547
CviQI	GTAC	5 cut(s)	600, 796, 899, 1242, 1263
DdeI	CTNAG	2 cut(s)	305, 1184
DpnI	GATC	4 cut(s)	422, 545, 606, 669
DpnII	GATC	4 cut(s)	420, 543, 604, 667
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	2 cut(s)	306, 684
Eco47I	GGWCC	2 cut(s)	584, 1153
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	824, 934
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	306, 684
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	3 cut(s)	379, 517, 550
FalI	AAGNNNNNCTT	6 cut(s)	243, 275, 311, 343, 971, 1003
FaqI	GGGAC	4 cut(s)	302, 640, 643, 1166
FatI	CATG	3 cut(s)	375, 513, 546
FbaI	TGATCA	3 cut(s)	543, 604, 667
Fnu4HI	GCNGC	6 cut(s)	21, 60, 63, 372, 470, 976
FriOI	GRGCYC	2 cut(s)	306, 684
Fsp4HI	GCNGC	6 cut(s)	21, 60, 63, 372, 470, 976
FspBI	CTAG	2 cut(s)	86, 566
GluI	GCNGC	6 cut(s)	21, 60, 63, 372, 470, 976
GsaI	CCCAGC	2 cut(s)	358, 645
HaeIII	GGCC	7 cut(s)	371, 623, 738, 873, 882, 960, 1203
HapII	CCGG	2 cut(s)	726, 790
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	379, 517, 550
HinfI	GANTC	3 cut(s)	383, 413, 517
HpaII	CCGG	2 cut(s)	726, 790
HphI	GGTGA	4 cut(s)	553, 1022, 1231, 1285
Hpy166II	GTNNAC	1 cut(s)	899
Hpy188I	TCNGA	4 cut(s)	210, 412, 638, 765
Hpy188III	TCNNGA	5 cut(s)	196, 223, 236, 665, 709
Hpy8I	GTNNAC	1 cut(s)	899
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	4 cut(s)	47, 337, 525, 927
HpyCH4III	ACNGT	8 cut(s)	217, 283, 293, 634, 806, 1115, 1133, 1161
HpyCH4V	TGCA	8 cut(s)	23, 59, 550, 978, 995, 1005, 1142, 1164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 620, 879
HpyF3I	CTNAG	2 cut(s)	305, 1184
Hsp92II	CATG	3 cut(s)	379, 517, 550
Ksp22I	TGATCA	3 cut(s)	543, 604, 667
Kzo9I	GATC	4 cut(s)	420, 543, 604, 667
LmnI	GCTCC	2 cut(s)	638, 868
Lsp1109I	GCAGC	5 cut(s)	7, 49, 71, 481, 962
LweI	GCATC	3 cut(s)	195, 229, 763
MaeI	CTAG	2 cut(s)	86, 566
MaeIII	GTNAC	3 cut(s)	389, 1127, 1219
MalI	GATC	4 cut(s)	422, 545, 606, 669
MboI	GATC	4 cut(s)	420, 543, 604, 667
MboII	GAAGA	8 cut(s)	32, 35, 38, 41, 342, 680, 1206, 1296
MfeI	CAATTG	2 cut(s)	275, 831
MhlI	GDGCHC	3 cut(s)	306, 684, 865
MmeI	TCCRAC	2 cut(s)	470, 616
MnlI	CCTC	9 cut(s)	279, 410, 511, 634, 668, 876, 884, 949, 1102
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	3 cut(s)	246, 693, 813
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	726, 790
MspR9I	CCNGG	2 cut(s)	826, 936
MunI	CAATTG	2 cut(s)	275, 831
Mva1269I	GAATGC	2 cut(s)	328, 1329
MvaI	CCWGG	2 cut(s)	826, 936
MwoI	GCNNNNNNNGC	3 cut(s)	368, 620, 879
NdeII	GATC	4 cut(s)	420, 543, 604, 667
NlaIII	CATG	3 cut(s)	379, 517, 550
NlaIV	GGNNCC	3 cut(s)	823, 915, 1154
NmuCI	GTSAC	1 cut(s)	1219
OliI	CACNNNNGTG	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	757
PctI	GAATGC	2 cut(s)	328, 1329
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	383, 413, 517
PkrI	GCNGC	6 cut(s)	22, 61, 64, 373, 471, 977
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	824, 934
PspFI	CCCAGC	2 cut(s)	354, 641
PspGI	CCWGG	2 cut(s)	824, 934
PspN4I	GGNNCC	3 cut(s)	823, 915, 1154
PspPI	GGNCC	6 cut(s)	369, 584, 621, 958, 1153, 1202
PstNI	CAGNNNCTG	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	5 cut(s)	601, 797, 900, 1243, 1264
RsaNI	GTAC	5 cut(s)	600, 796, 899, 1242, 1263
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	246, 693, 813
SatI	GCNGC	6 cut(s)	21, 60, 63, 372, 470, 976
Sau3AI	GATC	4 cut(s)	420, 543, 604, 667
Sau96I	GGNCC	6 cut(s)	369, 584, 621, 958, 1153, 1202
ScaI	AGTACT	1 cut(s)	601
ScrFI	CCNGG	2 cut(s)	826, 936
SduI	GDGCHC	3 cut(s)	306, 684, 865
SfaNI	GCATC	3 cut(s)	195, 229, 763
SfcI	CTRYAG	3 cut(s)	157, 180, 802
SfiI	GGCCNNNNNGGCC	1 cut(s)	879
SinI	GGWCC	2 cut(s)	584, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	988
SmoI	CTYRAG	1 cut(s)	988
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	372, 1217
SspMI	CTAG	2 cut(s)	86, 566
SstI	GAGCTC	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	824, 934
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	8 cut(s)	217, 283, 293, 634, 806, 1115, 1133, 1161
TaqI	TCGA	3 cut(s)	128, 195, 951
TatI	WGTACW	3 cut(s)	599, 795, 898
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	3 cut(s)	383, 413, 517
Tru1I	TTAA	3 cut(s)	246, 693, 813
Tru9I	TTAA	3 cut(s)	246, 693, 813
TscAI	CASTG	3 cut(s)	298, 706, 1166
TseFI	GTSAC	1 cut(s)	1219
TseI	GCWGC	5 cut(s)	20, 59, 62, 469, 975
Tsp45I	GTSAC	1 cut(s)	1219
TspDTI	ATGAA	5 cut(s)	17, 530, 937, 1014, 1032
TspRI	CASTG	3 cut(s)	298, 706, 1166
VpaK11BI	GGWCC	2 cut(s)	584, 1153
XapI	RAATTY	3 cut(s)	130, 346, 886
XmaJI	CCTAGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	2 cut(s)	86, 566
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.