MD11G1284200.v1.1

N-alpha-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016172
Physical Location & Seq
Forward (+)
40215468 .. 40218157
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1284200.v1.1.491

Sequence Viewer

Length: 525 bp
ATGACGACTATACGCAGATTCTGCTGCAATGATCTTCTTCGATTCAGCTCTGTGAATCTCGACCACCTCACTGAAACCTTCAATATGTCGTTTTACATGACGTATTTGGCGAGATGGCCCGACTACTTTCACGTTGCCGAAGCACCTGGACACCGAATCATGGGTTACATTATGGGAAAGGTTGAGGGGCAAGGTGAGTCATGGCATGGTCATGTAACTGCAGTAACCGTTTCCCCAGAATATCGCAGGCAGCAACTGGCCAAGAAGCTCATGAACTTGCTTGAAGAATTCAGCGATAAGATTGATAAGGGTTACTTTGTTGATCTTTTTGTGAGAGCATCTAACACCCCTGCCATAAAGATGTATGAAAAGCTTGGTTATGTAATCTATAGACGAGTGCTACGGTACTATTCAGGGGATGAAGATGGGTTAGATATGAGGAAAGCATTATCTCGAGACGTTGAAAAGAAGTCAATCATTCCCCTCAAACGCCCAGTTACTCCTGACGAATTAGAGTATGACTAA

Protein Analysis

175

Amino Acids

20.45

Weight (kDa)

7.76

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 26 - 127 2.9e-18 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 41 - 128 1.4e-12 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 41 - 128 1.5e-10 Acetyltransferase (GNAT) domain
FR47 PF08445 70 - 131 1.2e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03150
fragaria_vesca FvH4_2g23390
malus_domestica MD03G1263400.v1.1 MD11G1284200.v1.1
prunus_persica Prupe.8G239800_v2.0.a1
pyrus_communis pycom03g21090 pycom11g25160
rosa_chinensis RchiOBHm_Chr6g0290851
rosa_laevigata RLG00000012168
rosa_multiflora Rmu_sc0009276.1_g000006
rosa_roxburghii Rroxscaffold_7G00176690
rosa_rugosa Rorug06G0215200 Rorug06G0215300
rosa_samantha Rh6AG325800
rosa_wichuraiana Rw6G028330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 82, 284, 464
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 48, 268, 373
AluI AGCT 3 cut(s) 48, 268, 373
Alw26I GTCTC 1 cut(s) 450
AlwNI CAGNNNCTG 2 cut(s) 21, 256
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 116, 258
ApeKI GCWGC 2 cut(s) 24, 250
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 453
BalI TGGCCA 1 cut(s) 260
BbvI GCAGC 2 cut(s) 11, 262
BccI CCATC 2 cut(s) 108, 419
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 219, 388
BisI GCNGC 2 cut(s) 25, 251
BlsI GCNGC 2 cut(s) 26, 252
Bme1390I CCNGG 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 488
BmsI GCATC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 488
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 261, 494
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 261, 494
BseXI GCAGC 2 cut(s) 11, 262
BshFI GGCC 2 cut(s) 118, 260
BsiHKCI CYCGRG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 450
BsmBI CGTCTC 1 cut(s) 450
BsnI GGCC 2 cut(s) 118, 260
BsoBI CYCGRG 1 cut(s) 453
Bsp143I GATC 2 cut(s) 31, 322
BspANI GGCC 2 cut(s) 118, 260
BspHI TCATGA 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 2 cut(s) 261, 494
BssMI GATC 2 cut(s) 31, 322
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 229, 405
BstAPI GCANNNNNTGC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 34, 325
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 2 cut(s) 31, 322
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 219, 388
BstV1I GCAGC 2 cut(s) 11, 262
BsuRI GGCC 2 cut(s) 118, 260
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 248
CaiI CAGNNNCTG 2 cut(s) 21, 256
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 406
CviAII CATG 6 cut(s) 97, 160, 201, 206, 212, 271
CviJI RGCY 5 cut(s) 48, 118, 260, 268, 373
CviKI_1 RGCY 5 cut(s) 48, 118, 260, 268, 373
CviQI GTAC 1 cut(s) 406
DpnI GATC 2 cut(s) 33, 324
DpnII GATC 2 cut(s) 31, 322
EaeI YGGCCR 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 6 cut(s) 100, 163, 204, 209, 215, 274
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 6 cut(s) 96, 159, 200, 205, 211, 270
Fnu4HI GCNGC 2 cut(s) 25, 251
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 25, 251
GluI GCNGC 2 cut(s) 25, 251
HaeIII GGCC 2 cut(s) 118, 260
Hin1II CATG 6 cut(s) 100, 163, 204, 209, 215, 274
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 18, 42, 55, 156, 197
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 5 cut(s) 59, 271, 453, 455, 503
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 229, 405
HpyCH4IV ACGT 3 cut(s) 101, 132, 459
HpyCH4V TGCA 2 cut(s) 27, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpySE526I ACGT 3 cut(s) 101, 132, 459
Hsp92II CATG 6 cut(s) 100, 163, 204, 209, 215, 274
Kzo9I GATC 2 cut(s) 31, 322
LpnPI CCDG 9 cut(s) 132, 159, 232, 242, 249, 363, 399, 507, 516
Lsp1109I GCAGC 2 cut(s) 11, 262
LweI GCATC 1 cut(s) 347
MaeII ACGT 3 cut(s) 101, 132, 459
MaeIII GTNAC 5 cut(s) 164, 214, 223, 311, 496
MalI GATC 2 cut(s) 33, 324
MboI GATC 2 cut(s) 31, 322
MboII GAAGA 4 cut(s) 26, 29, 296, 434
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 287, 509
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 77, 178, 432, 494
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 210, 359
Msp20I TGGCCA 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 2 cut(s) 31, 322
NlaIII CATG 6 cut(s) 100, 163, 204, 209, 215, 274
PaeR7I CTCGAG 1 cut(s) 453
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 4 cut(s) 18, 42, 55, 156
PkrI GCNGC 2 cut(s) 26, 252
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspPI GGNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 2 cut(s) 21, 256
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 210, 359
SatI GCNGC 2 cut(s) 25, 251
Sau3AI GATC 2 cut(s) 31, 322
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 147
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 2 cut(s) 219, 388
Sfr274I CTCGAG 1 cut(s) 453
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 210, 359
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 2 cut(s) 287, 509
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 229, 405
TaiI ACGT 3 cut(s) 104, 135, 462
TaqI TCGA 3 cut(s) 40, 60, 454
TasI AATT 2 cut(s) 287, 509
TfiI GAWTC 4 cut(s) 18, 42, 55, 156
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 24, 250
TspDTI ATGAA 3 cut(s) 287, 381, 435
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.