Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016172

Physical Location & Seq

Genomic Coordinates Forward (+)

27998406 .. 28000705

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATGAGGGCGCTGACTGGGAAAATATTAAGGAGCCACTGATGCAAATTCCCCAAACCTCATTGTCCTATTTGTCCAGCGGTCAAACCGACCCGAAATACCGGTCGAACTCATTCAACTATTCAAGCATCCCAGGAGAGAGAGGGAGAGAGATGACGACGATACGCAGATTCTGCTGCAATGATCTTCTTCGATTCAGCTCTGTGAATCTCGACCACCTCACTGAAACCTTCAATATGTCGTTTTACATGACGTATTTGGCGAGATGGCCCGACTACTTTCACGTTGCCGAAGCACCTGGACACCGAATCATGGGTTACATTATGGGAAAGGTTGAGGGGCAAGGTGAGTCATGGCATGGTCATGTAACTGCGGTAACCGTTTCTCCAGAATATCGCAGGCAGCAACTGGCCAAGAAGCTCATGAACTTGCTTGAAGAATTCAGCGATAAGATTGATAAGGGATACTTTGTTGATCTTTTTGTGAGAGCATCAAACACCCCTGCCATAAAGATGTATGAAAAGCTTGGTTATGTAATCTATAGACGAGTGCTACGGTACTATTCAGGGGATGAAGATGGGTTAGATATGAGGAAAGCATTATCTCGGGACGTTGAAAAGAAGTCAATCATTCCCCTCAAACGGCCAGTTACTCCTGACGAATTAGAGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

226

Amino Acids

26.25

Weight (kDa)

6.24

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03150
fragaria_vesca	FvH4_2g23390
malus_domestica	MD03G1263400.v1.1 MD11G1284200.v1.1
prunus_persica	Prupe.8G239800_v2.0.a1
pyrus_communis	pycom03g21090 pycom11g25160
rosa_chinensis	RchiOBHm_Chr6g0290851
rosa_laevigata	RLG00000012168
rosa_multiflora	Rmu_sc0009276.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176690
rosa_rugosa	Rorug06G0215200 Rorug06G0215300
rosa_samantha	Rh6AG325800
rosa_wichuraiana	Rw6G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	81, 374
AcoI	YGGCCR	2 cut(s)	411, 644
AcsI	RAATTY	2 cut(s)	48, 440
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	313, 642
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	5 cut(s)	118, 126, 235, 437, 617
AjnI	CCWGG	2 cut(s)	133, 298
AluBI	AGCT	3 cut(s)	201, 421, 526
AluI	AGCT	3 cut(s)	201, 421, 526
AlwNI	CAGNNNCTG	2 cut(s)	174, 409
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	269, 411, 644
ApeKI	GCWGC	2 cut(s)	177, 403
ApoI	RAATTY	2 cut(s)	48, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsiGI	ACCGGT	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	164, 415
BccI	CCATC	2 cut(s)	261, 572
BceAI	ACGGC	1 cut(s)	659
BciT130I	CCWGG	2 cut(s)	135, 300
BciVI	GTATCC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	178, 404
BlsI	GCNGC	2 cut(s)	179, 405
Bme1390I	CCNGG	2 cut(s)	135, 300
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	135, 300
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	33, 138, 500
BmuI	ACTGGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 642
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	3 cut(s)	23, 414, 647
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	135, 300
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	10, 129, 577
BseLI	CCNNNNNNNGG	2 cut(s)	313, 642
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	3 cut(s)	23, 414, 647
BseXI	GCAGC	2 cut(s)	164, 415
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	271, 413, 646
BshTI	ACCGGT	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	313, 642
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	271, 413, 646
BsoBI	CYCGRG	1 cut(s)	606
Bsp143I	GATC	2 cut(s)	184, 475
BspACI	CCGC	2 cut(s)	81, 374
BspANI	GGCC	3 cut(s)	271, 413, 646
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	23, 414, 647
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	184, 475
Bst2UI	CCWGG	2 cut(s)	135, 300
Bst4CI	ACNGT	2 cut(s)	382, 558
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	401
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	3 cut(s)	10, 129, 577
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	187, 478
BstMBI	GATC	2 cut(s)	184, 475
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 174
BstNI	CCWGG	2 cut(s)	135, 300
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	133, 298
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	164, 415
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	271, 413, 646
BtsCI	GGATG	3 cut(s)	10, 129, 577
BtsIMutI	CAGTG	2 cut(s)	38, 222
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	2 cut(s)	174, 409
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	559
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	6 cut(s)	250, 313, 354, 359, 365, 424
CviJI	RGCY	7 cut(s)	37, 201, 271, 413, 421, 526, 646
CviKI_1	RGCY	7 cut(s)	37, 201, 271, 413, 421, 526, 646
CviQI	GTAC	1 cut(s)	559
DpnI	GATC	2 cut(s)	186, 477
DpnII	GATC	2 cut(s)	184, 475
EaeI	YGGCCR	2 cut(s)	411, 644
Eco88I	CYCGRG	1 cut(s)	606
Eco91I	GGTNACC	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	133, 298
FaeI	CATG	6 cut(s)	253, 316, 357, 362, 368, 427
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	6 cut(s)	249, 312, 353, 358, 364, 423
Fnu4HI	GCNGC	2 cut(s)	178, 404
FokI	GGATG	3 cut(s)	17, 116, 584
Fsp4HI	GCNGC	2 cut(s)	178, 404
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	178, 404
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	271, 413, 646
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	253, 316, 357, 362, 368, 427
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	5 cut(s)	171, 195, 208, 309, 350
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	359
Hpy188III	TCNNGA	5 cut(s)	212, 389, 424, 608, 656
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	382, 558
HpyCH4IV	ACGT	3 cut(s)	254, 285, 612
HpyCH4V	TGCA	2 cut(s)	46, 180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 174
HpySE526I	ACGT	3 cut(s)	254, 285, 612
Hsp92II	CATG	6 cut(s)	253, 316, 357, 362, 368, 427
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	184, 475
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	164, 415
LweI	GCATC	3 cut(s)	33, 138, 500
MaeII	ACGT	3 cut(s)	254, 285, 612
MaeIII	GTNAC	4 cut(s)	317, 367, 376, 649
MalI	GATC	2 cut(s)	186, 477
MboI	GATC	2 cut(s)	184, 475
MboII	GAAGA	4 cut(s)	179, 182, 449, 587
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	3 cut(s)	48, 440, 662
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	70, 137, 230, 331, 585, 647
Mox20I	TGGCCA	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	363, 512
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	135, 300
MvaI	CCWGG	2 cut(s)	135, 300
MwoI	GCNNNNNNNGC	2 cut(s)	43, 174
NdeII	GATC	2 cut(s)	184, 475
NlaIII	CATG	6 cut(s)	253, 316, 357, 362, 368, 427
NlaIV	GGNNCC	1 cut(s)	36
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	171, 195, 208, 309
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	179, 405
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	133, 298
PspEI	GGTNACC	1 cut(s)	376
PspGI	CCWGG	2 cut(s)	133, 298
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	270
PstNI	CAGNNNCTG	2 cut(s)	174, 409
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
RseI	CAYNNNNRTG	2 cut(s)	363, 512
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	178, 404
Sau3AI	GATC	2 cut(s)	184, 475
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	135, 300
SfaNI	GCATC	3 cut(s)	33, 138, 500
SfcI	CTRYAG	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	363, 512
Sse9I	AATT	3 cut(s)	48, 440, 662
SsiI	CCGC	2 cut(s)	81, 374
SspI	AATATT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	133, 298
TaaI	ACNGT	2 cut(s)	382, 558
TaiI	ACGT	3 cut(s)	257, 288, 615
TaqI	TCGA	3 cut(s)	107, 193, 213
TasI	AATT	3 cut(s)	48, 440, 662
TfiI	GAWTC	4 cut(s)	171, 195, 208, 309
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	45, 229
TseI	GCWGC	2 cut(s)	177, 403
TspDTI	ATGAA	3 cut(s)	440, 534, 588
TspRI	CASTG	2 cut(s)	45, 229
XapI	RAATTY	2 cut(s)	48, 440
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.