Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016172

Physical Location & Seq

Genomic Coordinates Reverse (-)

16340227 .. 16343097

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACTACGATTCGGAGATTTTGCTGCAATGATCTGCTTCGTTTCACTTCGGTCAATCTCGACCACCTCACTGAAACTTTCAATATGTCGTTCTATATGACCTATTTGGCAAGATGGCCGGATTATTTTCATGTTGCCGAAGCCCCGGGAAATCGAATCATGGGTTACATTATGGGAAAGGTTGAGGGGCAAGGTGAGTCGTGGCATGGTCATGTAACAGCGGTAACTGTTGCTCCAGAATATCGGAGGCAGCAGCTGGCCAAGAAGCTCATGAACCTCCTTGAAGACTTCAGCGATAAGATTGATAAGGGTTACTTTGTTGATCTTTTTGTGAGAGCATCAAACACTCCAGCCATAAAGATGTATGAGAAGCTTGGTTATATAATTTATAGACGAGTACTACGGTATTATTCAGGGGAGGAAGATGGGTTAGATATGAGGAAAGCATTATCTCGGGATGTTGAAAAGAAGTCAATCATACCCCTCAAACGACCAGTTACTCCTGATGAATTAGAGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017196 GO:0018193 GO:0018206 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031416 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

174

Amino Acids

20.44

Weight (kDa)

7.74

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	26 - 127	1.9e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	40 - 128	1.2e-10	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	41 - 128	1.9e-12	Acetyltransferase (GNAT) domain
FR47	PF08445	70 - 131	1.1e-07	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03150
fragaria_vesca	FvH4_2g23390
malus_domestica	MD03G1263400.v1.1 MD11G1284200.v1.1
prunus_persica	Prupe.8G239800_v2.0.a1
pyrus_communis	pycom03g21090 pycom11g25160
rosa_chinensis	RchiOBHm_Chr6g0290851
rosa_laevigata	RLG00000012168
rosa_multiflora	Rmu_sc0009276.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176690
rosa_rugosa	Rorug06G0215200 Rorug06G0215300
rosa_samantha	Rh6AG325800
rosa_wichuraiana	Rw6G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcoI	YGGCCR	2 cut(s)	116, 258
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	82, 284, 464
AluBI	AGCT	3 cut(s)	256, 268, 373
AluI	AGCT	3 cut(s)	256, 268, 373
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	2 cut(s)	145, 453
AoxI	GGCC	2 cut(s)	116, 258
ApeKI	GCWGC	3 cut(s)	24, 250, 253
AsuC2I	CCSGG	2 cut(s)	146, 147
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	2 cut(s)	145, 453
BalI	TGGCCA	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	11, 262, 265
BccI	CCATC	2 cut(s)	108, 419
BcnI	CCSGG	2 cut(s)	146, 147
BisI	GCNGC	3 cut(s)	25, 251, 254
BlsI	GCNGC	3 cut(s)	26, 252, 255
BmcAI	AGTACT	1 cut(s)	399
Bme1390I	CCNGG	2 cut(s)	146, 147
BmeT110I	CYCGRG	2 cut(s)	145, 453
BmrFI	CCNGG	2 cut(s)	146, 147
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	219, 333
BpuMI	CCSGG	2 cut(s)	146, 147
BsaJI	CCNNGG	2 cut(s)	144, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	144, 145
BseGI	GGATG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	11, 262, 265
BshFI	GGCC	2 cut(s)	118, 260
BsiHKCI	CYCGRG	2 cut(s)	145, 453
BsiSI	CCGG	2 cut(s)	119, 146
BsnI	GGCC	2 cut(s)	118, 260
BsoBI	CYCGRG	2 cut(s)	145, 453
Bsp143I	GATC	2 cut(s)	31, 322
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	118, 260
BspHI	TCATGA	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	144, 145
BssMI	GATC	2 cut(s)	31, 322
Bst4CI	ACNGT	2 cut(s)	229, 405
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	34, 325
BstMBI	GATC	2 cut(s)	31, 322
BstSCI	CCNGG	2 cut(s)	144, 145
BstV1I	GCAGC	3 cut(s)	11, 262, 265
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	118, 260
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	270
Cfr9I	CCCGGG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	5 cut(s)	131, 160, 206, 212, 271
CviJI	RGCY	7 cut(s)	118, 143, 256, 260, 268, 353, 373
CviKI_1	RGCY	7 cut(s)	118, 143, 256, 260, 268, 353, 373
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	2 cut(s)	33, 324
DpnII	GATC	2 cut(s)	31, 322
EaeI	YGGCCR	2 cut(s)	116, 258
Eco57I	CTGAAG	1 cut(s)	274
Eco88I	CYCGRG	2 cut(s)	145, 453
FaeI	CATG	5 cut(s)	134, 163, 209, 215, 274
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	5 cut(s)	130, 159, 205, 211, 270
Fnu4HI	GCNGC	3 cut(s)	25, 251, 254
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	25, 251, 254
GluI	GCNGC	3 cut(s)	25, 251, 254
GsuI	CTGGAG	2 cut(s)	219, 333
HaeIII	GGCC	2 cut(s)	118, 260
HapII	CCGG	2 cut(s)	119, 146
Hin1II	CATG	5 cut(s)	134, 163, 209, 215, 274
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	10, 156, 197
HpaII	CCGG	2 cut(s)	119, 146
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	15, 246
Hpy188III	TCNNGA	5 cut(s)	59, 236, 271, 455, 503
HpyCH4III	ACNGT	2 cut(s)	229, 405
HpyCH4V	TGCA	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	134, 163, 209, 215, 274
Kzo9I	GATC	2 cut(s)	31, 322
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	132, 159, 242, 249, 363, 399, 507, 516
Lsp1109I	GCAGC	3 cut(s)	11, 262, 265
LweI	GCATC	1 cut(s)	347
MaeIII	GTNAC	5 cut(s)	164, 214, 223, 311, 496
MalI	GATC	2 cut(s)	33, 324
MboI	GATC	2 cut(s)	31, 322
MboII	GAAGA	2 cut(s)	296, 434
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	2 cut(s)	384, 509
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	77, 178, 240, 287, 412, 432, 494
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	2 cut(s)	210, 359
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	221, 256
MspI	CCGG	2 cut(s)	119, 146
MspR9I	CCNGG	2 cut(s)	146, 147
NciI	CCSGG	2 cut(s)	146, 147
NdeII	GATC	2 cut(s)	31, 322
NlaIII	CATG	5 cut(s)	134, 163, 209, 215, 274
PagI	TCATGA	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	10, 156
PkrI	GCNGC	3 cut(s)	26, 252, 255
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	210, 359
SatI	GCNGC	3 cut(s)	25, 251, 254
Sau3AI	GATC	2 cut(s)	31, 322
ScaI	AGTACT	1 cut(s)	399
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	146, 147
SetI	ASST	8 cut(s)	69, 104, 183, 196, 258, 270, 279, 375
SfaNI	GCATC	1 cut(s)	347
SmaI	CCCGGG	1 cut(s)	147
SmiMI	CAYNNNNRTG	2 cut(s)	210, 359
Sse9I	AATT	2 cut(s)	384, 509
SsiI	CCGC	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	144, 145
TaaI	ACNGT	2 cut(s)	229, 405
TaqI	TCGA	2 cut(s)	60, 154
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	384, 509
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	10, 156
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	3 cut(s)	24, 250, 253
TspDTI	ATGAA	3 cut(s)	119, 287, 522
TspMI	CCCGGG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.