FvH4_2g24310

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006636
Physical Location & Seq
Forward (+)
19867272 .. 19873211
5940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24310.t3

Sequence Viewer

Length: 2973 bp
ATGAAGAAAGGCAAGGGGAGGAACAACGGCGGAGGCGGCGGCTTGTTGCCGAGCTCGCTGAGGATCATATCGTCGTGCCTCAAGACTGTTTCGACGAATGCCAGCACTGTCGCTTCTACTGTTCGTTCCGCCGGAGCGTCCGTCGCTGCTTCTATTTCTGCTTCCGAGGATCACAAGGATCAGGTGACCTGGGCTGGATTTGATAGGCTAGAGCTTGGTCACTCGGCCTTCAAACGGGTTCTGTTGCTTGGTTATCTGAATGGATTTCAAGTGTTTGATGTCGAGGATGCCTCTAACTACAGTGAACTGGTTTCAAAGCGTGATGGCCCAGTTTCGTTCTTACAGATGCAGCCCTATCCTGCAGCTTCTGATGATAAGGAGGGATTTAGAGCTTCTCATCCTTTGTTGCTGGTGGTTGCTGGAGATGACACCAATGGTTCAGGCGTTGTTCAAAATCACAGCAACTTGGGAGGCTTAGGAAGAGATGGTCATGTGGAGTCTCGGCCAGGAAACCCTGTCAGCTCTCCTACAGCTGTTCGGTTTTACTCGCTGAGGTCCCACAGTTATGTGCATGTTCTGAGATTCCGGTCTGCTGTCTGTATGATTAGATGCAGTCCTCGGATAGTAGCTGTTGGTCTTGCAAGTCAAATATACTGCTTTGACGCCCTTACCCTCGAAAATAAATTCAGTGTTCTTACCTATCCTGTTCCTCAGCTAGCAGGACAAGGATCCTCTGGGTTTAACGTAGGTTATGGCCCAATGGCTGTGGGTCCTAGGTGGCTAGCTTATGCTTCCAACAGCCCACTCATGTCAAACACAAGTCGCTTAGGCCCCCATAATCTTTCTCATTCTCCAGGAGTTAGTCCATCTACATCACCTGGGAATGGTAGTTACGTGGCTCGTTATGCAATGGAATCTAGCAAACAGTTGGCTACTGGAATTATCAACCTGAGTGACATGGGATGCAAAACCTTGTACAAATACTGTCAAGAGCTTCTCCCTGATGGGTCTAGTTCTCCAGTATCATCAAATTCAGGCTGGAAAGTTAGCAGGCTTGCCGGAACAGAAATGGATAATGCTGGGATGGTTGTTGTCAAAGATTTTGTTACCCGAGCTGTTATATCGCAGTTCAAGGCTCATACTAGTCCAATATCTGCACTGTGTTTCGACCCCAGTGGGACCCTTCTTGTTACTGCCTCAATATATGGAAATAACATTAATATTTTCCGGATAATGCCTTCATGCAAACGCAATGGATCAGGCACTCAGAACATGAATTGGAACTCGTCTCATGTGCATCTGTACAAGCTGCATCGTGGAATAACATCGGCTTTGATCCAGGACATTTGCTTTAGTCATTATTCTCAATGGGTTGCAATTGTTTCATCCAAGGGGACCTGCCATGTTTTTGTTCTATCCCCTTTTGGTGGTGATGCTGGATTTCAAGTTCAACATTCCCAGGGTGAAGAACCCACGCTATATCCAGTTTTATCTCTTCCTTGGTGGTCTACTTCTTCTTGTATCATGACTCAACAATCTTTTCCACCCCCACCACCTGTTACTCTTTCGGTTGTGAGCAGAATAAAGTATAGTAGTTTTGGGTGGCTTAGCACAGTCAACAATGCTGCTGGTTCCACAACAGGAAAGGTATTTGTACCATCTGGTGCTGTTGCGGCTGTTTTTCATAATTCCCTTTCTCAGAGTGTTCAGCACAGTAACTCAAGGGCCAGTACCTTGGAGTATCTATTAGTTTATACTCCATCAGGTCATGTAGTTCAACATGAACTTCAGCCAAGAGTCGGGGTAGAACAAAGTCATAGCGGTTTGAATACCCAGACAGCTACATACAGGCACATGCAGGAGGAGGACCTGAGAGTGAAAGTTGAACCTATACAATGGTGGGATGTGTGCAGGCGTTCAGATTGGCCAGAAAGGGAGGACTGTATTTTAGGAATCAACCCTGATGGTGATGTCGCGGGAACAATTCAGAGTAAATCAGGTTGTGATGGTACTTACGCAATGGAGTTTCTTGACTTAAATGGTGGTGTTGAGGGGAAAAGGAACCTGGAAACTCATTGGTCCAGGAACATCTCTAATGCAGAGGTGCAAATAAGTTCTTTCAGATTACCAATATGGCAAAAGTCTAAGATCTGCTTTTACACAATGGAGTGTCAAAGAGGTGATAGTTTTCCTGGTGGAGAGTTTGAAGTTGAGAAAGTCCCTATTCATGAAATCGAAATGAGGCAGAAGGAATTGTTACCTGTTTTTCACCAATTTCATAGCATCAAATCAAGCTGGAATGATAGAGTCGTAGTTGGAAAATATTCAAATAATTCTTCATCAGAATCTCATCAAGCTGAAGGCAAGATCTCAGAACAGACTGTTATTTGTCACTCAAACCCTGCATCGCTTAGCTCCACAGAAAGCTCAGAAGGGGGTTCATCAAGAAGAATTGAGCATTCGCTAGATTTTGATCAGCTGAACAATGATCTGCCCCGATCTCCCATGCTTCAGACTTTAAATTGCCCAGAAAGAAGAGCAAATGCTATTCTGGAGTCTTCATTTCAAAACCATTCATTTCTTGGCACCCTCTGTGCTCCATCTGAACATTTTAAAAACATCGGTTCTCAAGTCACTGTATTAGAAAGTAAGCTTCTCCCAGTTGGAAGATTCTATGCCGAAGAAGGCCTATCAGTGAAAACAATTGGGATGAGTGAGGGCTTGGATTTATACACGGATCAACATGCTTCGAGTACTGTAGTTGTGACAGAGGGGGATTCCAATCTGCAACGTCCAATAGATCTCTCGCAGTTTTTCCAGGAGGGGCATTGTATGGCATTGGAGCAGAATGGATGCCTATCTGAAGTCATAACCGATGATAGCGATGGTAGCCAATGCGATAAGGGAAAACCTGACGACGAAGAAAATGGCGAAATGCTTGGAGGCATGTTTGCCTTTTCTGATGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

991

Amino Acids

107.64

Weight (kDa)

6.08

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 80 - 482 4.8e-33 BCAS3, WD40 repeat
BCAS3 PF12490 616 - 742 3.8e-24 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1406
AccB1I GGYRCC 1 cut(s) 2585
AccI GTMKAC 1 cut(s) 1508
AccII CGCG 1 cut(s) 1976
AccIII TCCGGA 1 cut(s) 1227
AciI CCGC 7 cut(s) 30, 36, 39, 129, 1673, 1821, 1976
AclWI GGATC 8 cut(s) 71, 177, 186, 723, 736, 1264, 1330, 2745
AcoI YGGCCR 2 cut(s) 503, 1925
AcsI RAATTY 2 cut(s) 683, 1030
AcuI CTGAAG 4 cut(s) 1772, 2379, 2495, 2883
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 6 cut(s) 977, 1304, 1656, 1732, 2011, 2755
AfiI CCNNNNNNNGG 4 cut(s) 234, 884, 1427, 1799
AhlI ACTAGT 1 cut(s) 1142
AloI GAACNNNNNNTCC 2 cut(s) 1431, 1463
Alw21I GWGCWC 2 cut(s) 56, 2599
Alw26I GTCTC 2 cut(s) 504, 1293
AlwI GGATC 8 cut(s) 71, 177, 186, 723, 736, 1264, 1330, 2745
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 1 cut(s) 1227
AoxI GGCC 8 cut(s) 225, 325, 503, 754, 829, 1725, 1925, 2686
ApeKI GCWGC 5 cut(s) 146, 349, 362, 1309, 1625
ApoI RAATTY 2 cut(s) 683, 1030
AseI ATTAAT 1 cut(s) 1218
Asp700I GAANNNNTTC 1 cut(s) 2323
AspA2I CCTAGG 1 cut(s) 773
AsuHPI GGTGA 7 cut(s) 196, 867, 1442, 1475, 1979, 2192, 2261
AsuNHI GCTAGC 2 cut(s) 715, 781
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 6 cut(s) 555, 770, 1179, 1395, 1867, 2079
AvrII CCTAGG 1 cut(s) 773
BalI TGGCCA 1 cut(s) 1927
BamHI GGATCC 1 cut(s) 728
BanI GGYRCC 1 cut(s) 2585
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 2550
Bbv12I GWGCWC 2 cut(s) 56, 2599
BbvCI CCTCAGC 3 cut(s) 59, 551, 711
BbvI GCAGC 5 cut(s) 133, 361, 374, 1296, 1612
BceAI ACGGC 1 cut(s) 43
BclI TGATCA 1 cut(s) 2473
BcoDI GTCTC 2 cut(s) 504, 1293
BcuI ACTAGT 1 cut(s) 1142
BfaI CTAG 8 cut(s) 209, 716, 774, 782, 918, 1011, 1143, 2465
BfmI CTRYAG 4 cut(s) 298, 360, 528, 2757
BfuAI ACCTGC 1 cut(s) 1406
BglII AGATCT 3 cut(s) 2148, 2367, 2800
BisI GCNGC 8 cut(s) 37, 40, 147, 350, 363, 1310, 1626, 1674
BlnI CCTAGG 1 cut(s) 773
BlpI GCTNAGC 2 cut(s) 1607, 2411
BlsI GCNGC 8 cut(s) 38, 41, 148, 351, 364, 1311, 1627, 1675
BmcAI AGTACT 1 cut(s) 2755
Bme18I GGWCC 6 cut(s) 555, 770, 1179, 1395, 1867, 2079
BmeT110I CYCGRG 1 cut(s) 1110
BmrI ACTGGG 3 cut(s) 323, 1167, 2654
BmtI GCTAGC 2 cut(s) 719, 785
BmuI ACTGGG 3 cut(s) 323, 1167, 2654
BpiI GAAGAC 1 cut(s) 2550
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 4 cut(s) 441, 837, 1002, 2573
Bpu10I CCTNAGC 5 cut(s) 59, 475, 551, 711, 826
Bpu1102I GCTNAGC 2 cut(s) 1607, 2411
BpuEI CTTGAG 3 cut(s) 65, 1705, 2613
BsaAI YACGTR 1 cut(s) 895
BsaBI GATNNNNATC 3 cut(s) 2472, 2781, 2857
BsaHI GRCGYC 1 cut(s) 663
BsaWI WCCGGW 2 cut(s) 585, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 884, 1427, 1799
Bse1I ACTGG 8 cut(s) 312, 329, 940, 1019, 1173, 1484, 1728, 2660
Bse3DI GCAATG 3 cut(s) 915, 1258, 2025
Bse8I GATNNNNATC 3 cut(s) 2472, 2781, 2857
BseAI TCCGGA 1 cut(s) 1227
BseGI GGATG 8 cut(s) 292, 397, 968, 1089, 1385, 1909, 2715, 2858
BseJI GATNNNNATC 3 cut(s) 2472, 2781, 2857
BseLI CCNNNNNNNGG 4 cut(s) 234, 884, 1427, 1799
BseMI GCAATG 3 cut(s) 915, 1258, 2025
BseNI ACTGG 8 cut(s) 312, 329, 940, 1019, 1173, 1484, 1728, 2660
BseRI GAGGAG 1 cut(s) 1877
BseXI GCAGC 5 cut(s) 133, 361, 374, 1296, 1612
BseYI CCCAGC 1 cut(s) 1079
BsgI GTGCAG 2 cut(s) 1140, 1930
Bsh1236I CGCG 1 cut(s) 1976
BshFI GGCC 8 cut(s) 227, 327, 505, 756, 831, 1727, 1927, 2688
BshNI GGYRCC 1 cut(s) 2585
BsiHKAI GWGCWC 2 cut(s) 56, 2599
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 4 cut(s) 132, 586, 1059, 1228
BslFI GGGAC 4 cut(s) 541, 1192, 1408, 2204
BslI CCNNNNNNNGG 4 cut(s) 234, 884, 1427, 1799
BsmAI GTCTC 2 cut(s) 504, 1293
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 4 cut(s) 541, 1192, 1408, 2204
BsmI GAATGC 2 cut(s) 103, 2458
BsnI GGCC 8 cut(s) 227, 327, 505, 756, 831, 1727, 1927, 2688
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 2 cut(s) 56, 2599
Bsp13I TCCGGA 1 cut(s) 1227
Bsp1407I TGTACA 2 cut(s) 975, 1302
Bsp1720I GCTNAGC 2 cut(s) 1607, 2411
BspACI CCGC 7 cut(s) 30, 36, 39, 129, 1673, 1821, 1976
BspANI GGCC 8 cut(s) 227, 327, 505, 756, 831, 1727, 1927, 2688
BspEI TCCGGA 1 cut(s) 1227
BspFNI CGCG 1 cut(s) 1976
BspHI TCATGA 2 cut(s) 1524, 2227
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 1406
BspOI GCTAGC 2 cut(s) 719, 785
BspPI GGATC 8 cut(s) 71, 177, 186, 723, 736, 1264, 1330, 2745
BspQI GCTCTTC 1 cut(s) 2530
BspT107I GGYRCC 1 cut(s) 2585
BsrDI GCAATG 3 cut(s) 915, 1258, 2025
BsrGI TGTACA 2 cut(s) 975, 1302
BsrI ACTGG 8 cut(s) 312, 329, 940, 1019, 1173, 1484, 1728, 2660
BssNI GRCGYC 1 cut(s) 663
BssT1I CCWWGG 4 cut(s) 773, 1389, 1499, 1734
Bst6I CTCTTC 3 cut(s) 475, 1500, 2530
BstACI GRCGYC 1 cut(s) 663
BstAUI TGTACA 2 cut(s) 975, 1302
BstBAI YACGTR 1 cut(s) 895
BstC8I GCNNGC 7 cut(s) 56, 103, 717, 783, 1052, 1056, 1913
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 8 cut(s) 292, 397, 968, 1089, 1385, 1909, 2715, 2858
BstFNI CGCG 1 cut(s) 1976
BstMAI GTCTC 2 cut(s) 504, 1293
BstMWI GCNNNNNNNGC 6 cut(s) 36, 55, 143, 905, 1673, 2889
BstNSI RCATGY 4 cut(s) 575, 1858, 2747, 2950
BstPI GGTNACC 1 cut(s) 184
BstSFI CTRYAG 4 cut(s) 298, 360, 528, 2757
BstUI CGCG 1 cut(s) 1976
BstV1I GCAGC 5 cut(s) 133, 361, 374, 1296, 1612
BstV2I GAAGAC 1 cut(s) 2550
BstX2I RGATCY 4 cut(s) 728, 2148, 2367, 2800
BstXI CCANNNNNNTGG 1 cut(s) 1735
BstYI RGATCY 4 cut(s) 728, 2148, 2367, 2800
BsuRI GGCC 8 cut(s) 227, 327, 505, 756, 831, 1727, 1927, 2688
BtgZI GCGATG 2 cut(s) 2391, 2898
BtsCI GGATG 8 cut(s) 292, 397, 968, 1089, 1385, 1909, 2715, 2858
BtsIMutI CAGTG 7 cut(s) 105, 307, 694, 1157, 1180, 2634, 2700
BveI ACCTGC 1 cut(s) 1406
Cac8I GCNNGC 7 cut(s) 56, 103, 717, 783, 1052, 1056, 1913
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 2 cut(s) 1524, 2227
CseI GACGC 2 cut(s) 126, 671
Csp6I GTAC 6 cut(s) 976, 1303, 1655, 1731, 2010, 2754
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviQI GTAC 6 cut(s) 976, 1303, 1655, 1731, 2010, 2754
DraI TTTAAA 2 cut(s) 2520, 2614
EaeI YGGCCR 2 cut(s) 503, 1925
Eam1104I CTCTTC 3 cut(s) 475, 1500, 2530
EarI CTCTTC 3 cut(s) 475, 1500, 2530
EciI GGCGGA 2 cut(s) 45, 118
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 4 cut(s) 773, 1389, 1499, 1734
Eco147I AGGCCT 1 cut(s) 2688
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 6 cut(s) 555, 770, 1179, 1395, 1867, 2079
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 4 cut(s) 1772, 2379, 2495, 2883
Eco88I CYCGRG 1 cut(s) 1110
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 54
EcoO109I RGGNCCY 6 cut(s) 555, 770, 830, 1179, 1395, 1867
EcoO65I GGTNACC 1 cut(s) 184
EcoT14I CCWWGG 4 cut(s) 773, 1389, 1499, 1734
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 4 cut(s) 773, 1389, 1499, 1734
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 2138, 2170
FaqI GGGAC 4 cut(s) 541, 1192, 1408, 2204
FauI CCCGC 1 cut(s) 1969
FbaI TGATCA 1 cut(s) 2473
FblI GTMKAC 1 cut(s) 1508
Fnu4HI GCNGC 8 cut(s) 37, 40, 147, 350, 363, 1310, 1626, 1674
FokI GGATG 8 cut(s) 299, 384, 975, 1096, 1372, 1916, 2722, 2865
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 8 cut(s) 37, 40, 147, 350, 363, 1310, 1626, 1674
FspBI CTAG 8 cut(s) 209, 716, 774, 782, 918, 1011, 1143, 2465
GluI GCNGC 8 cut(s) 37, 40, 147, 350, 363, 1310, 1626, 1674
GsaI CCCAGC 1 cut(s) 1083
GsuI CTGGAG 4 cut(s) 441, 837, 1002, 2573
HaeIII GGCC 8 cut(s) 227, 327, 505, 756, 831, 1727, 1927, 2688
HapII CCGG 4 cut(s) 132, 586, 1059, 1228
HgaI GACGC 2 cut(s) 126, 671
Hin1I GRCGYC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 1618
HindII GTYRAC 1 cut(s) 1618
HindIII AAGCTT 1 cut(s) 2651
HpaII CCGG 4 cut(s) 132, 586, 1059, 1228
HphI GGTGA 7 cut(s) 196, 867, 1442, 1475, 1979, 2192, 2261
Hpy166II GTNNAC 3 cut(s) 305, 1509, 1618
Hpy188III TCNNGA 8 cut(s) 82, 989, 1228, 1525, 2030, 2228, 2445, 2552
Hpy8I GTNNAC 3 cut(s) 305, 1509, 1618
Hpy99I CGWCG 4 cut(s) 76, 97, 146, 2921
HpyAV CCTTC 8 cut(s) 238, 1193, 1248, 2242, 2354, 2426, 2678, 2960
HpyCH4IV ACGT 3 cut(s) 744, 894, 2791
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 55, 143, 905, 1673, 2889
HpySE526I ACGT 3 cut(s) 744, 894, 2791
Hsp92I GRCGYC 1 cut(s) 663
KflI GGGWCCC 1 cut(s) 1179
Kpn2I TCCGGA 1 cut(s) 1227
Ksp22I TGATCA 1 cut(s) 2473
LguI GCTCTTC 1 cut(s) 2530
LmnI GCTCC 4 cut(s) 134, 2420, 2602, 2842
Lsp1109I GCAGC 5 cut(s) 133, 361, 374, 1296, 1612
MaeI CTAG 8 cut(s) 209, 716, 774, 782, 918, 1011, 1143, 2465
MaeII ACGT 3 cut(s) 744, 894, 2791
MfeI CAATTG 2 cut(s) 1377, 2703
MflI RGATCY 4 cut(s) 728, 2148, 2367, 2800
MhlI GDGCHC 2 cut(s) 56, 2599
MlsI TGGCCA 1 cut(s) 1927
MluNI TGGCCA 1 cut(s) 1927
MlyI GAGTC 5 cut(s) 506, 1522, 1806, 2316, 2564
MmeI TCCRAC 3 cut(s) 819, 2296, 2644
Mox20I TGGCCA 1 cut(s) 1927
MroI TCCGGA 1 cut(s) 1227
MroXI GAANNNNTTC 1 cut(s) 2323
MscI TGGCCA 1 cut(s) 1927
MseI TTAA 5 cut(s) 741, 1218, 2036, 2519, 2613
MslI CAYNNNNRTG 1 cut(s) 564
Msp20I TGGCCA 1 cut(s) 1927
MspA1I CMGCKG 2 cut(s) 533, 2479
MspI CCGG 4 cut(s) 132, 586, 1059, 1228
MunI CAATTG 2 cut(s) 1377, 2703
Mva1269I GAATGC 2 cut(s) 103, 2458
MvnI CGCG 1 cut(s) 1976
MwoI GCNNNNNNNGC 6 cut(s) 36, 55, 143, 905, 1673, 2889
NheI GCTAGC 2 cut(s) 715, 781
NmeAIII GCCGAG 3 cut(s) 75, 203, 481
NmuCI GTSAC 6 cut(s) 184, 218, 953, 2390, 2632, 2764
NspI RCATGY 4 cut(s) 575, 1858, 2747, 2950
PagI TCATGA 2 cut(s) 1524, 2227
PasI CCCWGGG 1 cut(s) 1459
PceI AGGCCT 1 cut(s) 2688
PciSI GCTCTTC 1 cut(s) 2530
PctI GAATGC 2 cut(s) 103, 2458
PdmI GAANNNNTTC 1 cut(s) 2323
PfeI GAWTC 6 cut(s) 582, 914, 1953, 2345, 2670, 2777
PfoI TCCNGGA 4 cut(s) 853, 1338, 2081, 2817
PkrI GCNGC 8 cut(s) 38, 41, 148, 351, 364, 1311, 1627, 1675
PleI GAGTC 5 cut(s) 505, 1522, 1805, 2315, 2563
PpsI GAGTC 5 cut(s) 505, 1522, 1805, 2315, 2563
Ppu21I YACGTR 1 cut(s) 895
PpuMI RGGWCCY 5 cut(s) 555, 770, 1179, 1395, 1867
PshBI ATTAAT 1 cut(s) 1218
Psp124BI GAGCTC 1 cut(s) 56
Psp5II RGGWCCY 5 cut(s) 555, 770, 1179, 1395, 1867
PspEI GGTNACC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 1079
PspPPI RGGWCCY 5 cut(s) 555, 770, 1179, 1395, 1867
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 4 cut(s) 728, 2148, 2367, 2800
PvuII CAGCTG 2 cut(s) 533, 2479
RsaI GTAC 6 cut(s) 977, 1304, 1656, 1732, 2011, 2755
RsaNI GTAC 6 cut(s) 976, 1303, 1655, 1731, 2010, 2754
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 2530
SaqAI TTAA 5 cut(s) 741, 1218, 2036, 2519, 2613
SatI GCNGC 8 cut(s) 37, 40, 147, 350, 363, 1310, 1626, 1674
ScaI AGTACT 1 cut(s) 2755
SchI GAGTC 5 cut(s) 506, 1522, 1806, 2316, 2564
SduI GDGCHC 2 cut(s) 56, 2599
SfcI CTRYAG 4 cut(s) 298, 360, 528, 2757
SinI GGWCC 6 cut(s) 555, 770, 1179, 1395, 1867, 2079
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 3 cut(s) 80, 1720, 2628
SmoI CTYRAG 3 cut(s) 80, 1720, 2628
SpeI ACTAGT 1 cut(s) 1142
SseBI AGGCCT 1 cut(s) 2688
SsiI CCGC 7 cut(s) 30, 36, 39, 129, 1673, 1821, 1976
SspI AATATT 2 cut(s) 1222, 2324
SspMI CTAG 8 cut(s) 209, 716, 774, 782, 918, 1011, 1143, 2465
SstI GAGCTC 1 cut(s) 56
StuI AGGCCT 1 cut(s) 2688
StyI CCWWGG 4 cut(s) 773, 1389, 1499, 1734
TaiI ACGT 3 cut(s) 747, 897, 2794
TaqI TCGA 6 cut(s) 92, 282, 675, 1167, 2235, 2750
TatI WGTACW 3 cut(s) 975, 1302, 2753
TauI GCSGC 3 cut(s) 39, 42, 1676
TfiI GAWTC 6 cut(s) 582, 914, 1953, 2345, 2670, 2777
Tru1I TTAA 5 cut(s) 741, 1218, 2036, 2519, 2613
Tru9I TTAA 5 cut(s) 741, 1218, 2036, 2519, 2613
TscAI CASTG 7 cut(s) 112, 307, 694, 1164, 1180, 2641, 2700
TseFI GTSAC 6 cut(s) 184, 218, 953, 2390, 2632, 2764
TseI GCWGC 5 cut(s) 146, 349, 362, 1309, 1625
Tsp45I GTSAC 6 cut(s) 184, 218, 953, 2390, 2632, 2764
TspGWI ACGGA 2 cut(s) 130, 2750
TspRI CASTG 7 cut(s) 112, 307, 694, 1164, 1180, 2641, 2700
VpaK11BI GGWCC 6 cut(s) 555, 770, 1179, 1395, 1867, 2079
VspI ATTAAT 1 cut(s) 1218
XapI RAATTY 2 cut(s) 683, 1030
XceI RCATGY 4 cut(s) 575, 1858, 2747, 2950
XcmI CCANNNNNNNNNTGG 1 cut(s) 2579
XmaJI CCTAGG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 1508
XmnI GAANNNNTTC 1 cut(s) 2323
XspI CTAG 8 cut(s) 209, 716, 774, 782, 918, 1011, 1143, 2465
ZrmI AGTACT 1 cut(s) 2755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.