Rorug06G0224300

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006636
Physical Location & Seq
Forward (+)
35818773 .. 35823719
4947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0224300.1

Sequence Viewer

Length: 1155 bp
ATGGTCAAAGAAACTGAGTACTATGATGCACTCAATGTCAGTCCCTCAGCTTCGGAAGAGGAAATTCGCAAGGCTTATTATCTCAAGGCAAGGCAAGTACATCCGGATAAAAATCCAAATGATCCTCAAGCTGCTGAAAGATTTCAGGTACTTGGGGAAGCCTACCAAGTTTTGAGTGATCCACTGCAAAGAGAAGCATATGATCGAAATGGAAAGCACTGCATATCTAGGGATACAATGCTTGACCCCACAGCTGTCTTTGCTTTTCTTTTCGGAAGTGAACTATTTGAGGATTACATAGGGCATCTAGCTGTAGCATCAATGGCTTCTTCTCAATTAGCTGGTGAAGGTGACAACCCTGAGAAAGTACATGATAAATTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAGCTAGCTAAGGCACTCAAAGATCTTCTTAATCAGTATGTGCGAGGTGATAAAGAAGGGTTCTTACTTCATGCTGAATCTGAAGCTAGAAGACTTTCTGATGCAGCCTTTGGAGTAAATATGCTACACACTATTGGCTATGTTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAAAACCATATACCTAGGGGTACCATTTTTGGCTGAGTGGGTGCGCAACAAGGGACATTTCTGGAAGTCACAGATGACCGCTGCAAAAGGTGCATTCCAGCTGATGCAACTTCAAGAAGAAATCCGTCGGCAGTTTAAAGTGGATGGTAGTGGCCCTGAACATGATGTTGAATCACAAATACGCTTAAACAAGGACACATTATTGAACTCATTGTGGAAATTGAATGTGGTTGACATTGAAGTAACTCTCGTACATGTTTGTCAAATGGTGCTACGGGAAACTAATGTTCGAAAGGATGAACTTAGAGCTCGTGCTTTGGCACTAAAGCTTCTTGGAAAGATATTTCAGGAGGAAAAGCAGACACAAAATGGTGCAACTTCAAAACGGAAAGGTGATGCTGACACAGACGATGATGATGGAACTAGTTCTGATAGTAGTGGAGAGGATTCACCACAACGGCTTTCATATAGAACTCCTTTTCTCACTCAGGGAATTGGAAGACTCTTCAGATGCCTCTGTAATCCAGCATATGATGTTGATGACGACGAGATTGTGTACAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

384

Amino Acids

43.47

Weight (kDa)

5.72

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 1e-24 DnaJ domain
DnaJ-X PF14308 131 - 324 2.7e-52 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 663
AclWI GGATC 2 cut(s) 116, 173
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 510, 1075
AfaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 837, 1142
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 8 cut(s) 382, 558, 698, 755, 790, 808, 824, 966
AhlI ACTAGT 1 cut(s) 1007
Alw21I GWGCWC 1 cut(s) 895
AlwI GGATC 2 cut(s) 116, 173
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 4 cut(s) 131, 512, 566, 665
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 3 cut(s) 141, 502, 1009
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 598
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 356, 362, 467, 989, 1026
AsuII TTCGAA 1 cut(s) 874
AsuNHI GCTAGC 1 cut(s) 412
AvrII CCTAGG 1 cut(s) 598
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 895
BarI GAAGNNNNNNTAC 2 cut(s) 456, 488
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 2 cut(s) 505, 1090
Bbv12I GWGCWC 1 cut(s) 895
BbvCI CCTCAGC 1 cut(s) 46
BbvI GCAGC 4 cut(s) 118, 524, 578, 652
BccI CCATC 2 cut(s) 722, 995
BceAI ACGGC 1 cut(s) 1058
BciVI GTATCC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
BfmI CTRYAG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 226
BglII AGATCT 1 cut(s) 430
BisI GCNGC 4 cut(s) 132, 513, 567, 666
BlnI CCTAGG 1 cut(s) 598
BlsI GCNGC 4 cut(s) 133, 514, 568, 667
BmcAI AGTACT 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 7 cut(s) 16, 313, 326, 499, 678, 970, 1085
BmtI GCTAGC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 505, 1090
Bpu10I CCTNAGC 2 cut(s) 46, 417
Bpu14I TTCGAA 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 68, 111
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 3 cut(s) 100, 733, 886
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 5 cut(s) 6, 60, 351, 609, 1085
BseXI GCAGC 4 cut(s) 118, 524, 578, 652
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 27, 651
BsmFI GGGAC 2 cut(s) 27, 651
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 1 cut(s) 738
Bsp119I TTCGAA 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 895
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 4 cut(s) 121, 178, 202, 430
BspACI CCGC 1 cut(s) 663
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 5 cut(s) 7, 59, 352, 610, 1084
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 116, 173
BspT104I TTCGAA 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 1140
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 4 cut(s) 121, 178, 202, 430
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 894
Bst6I CTCTTC 2 cut(s) 51, 1094
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 874
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 7 cut(s) 15, 46, 360, 417, 618, 887, 1071
BstF5I GGATG 3 cut(s) 100, 733, 886
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 4 cut(s) 124, 181, 205, 433
BstMBI GATC 4 cut(s) 121, 178, 202, 430
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 118, 524, 578, 652
BstV2I GAAGAC 2 cut(s) 505, 1090
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 3 cut(s) 100, 733, 886
BtsI GCAGTG 2 cut(s) 182, 217
BtsIMutI CAGTG 2 cut(s) 182, 217
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
CviAII CATG 4 cut(s) 371, 479, 746, 839
CviQI GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
DdeI CTNAG 7 cut(s) 15, 46, 360, 417, 618, 887, 1071
DpnI GATC 4 cut(s) 123, 180, 204, 432
DpnII GATC 4 cut(s) 121, 178, 202, 430
DraI TTTAAA 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 51, 1094
EarI CTCTTC 2 cut(s) 51, 1094
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 2 cut(s) 510, 1075
EcoICRI GAGCTC 1 cut(s) 893
EcoT14I CCWWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 4 cut(s) 374, 482, 749, 842
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 2 cut(s) 27, 651
FatI CATG 4 cut(s) 370, 478, 745, 838
FauNDI CATATG 2 cut(s) 199, 1114
Fnu4HI GCNGC 4 cut(s) 132, 513, 567, 666
FokI GGATG 3 cut(s) 87, 740, 893
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 4 cut(s) 132, 513, 567, 666
FspBI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 1 cut(s) 629
GluI GCNGC 4 cut(s) 132, 513, 567, 666
HaeIII GGCC 1 cut(s) 738
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 374, 482, 749, 842
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 485, 755, 1031, 1086
HpaII CCGG 1 cut(s) 104
HphI GGTGA 5 cut(s) 356, 362, 467, 989, 1026
Hpy166II GTNNAC 3 cut(s) 281, 817, 1141
Hpy188I TCNGA 6 cut(s) 55, 275, 490, 508, 1015, 1094
Hpy188III TCNNGA 6 cut(s) 104, 391, 558, 646, 698, 932
Hpy8I GTNNAC 3 cut(s) 281, 817, 1141
Hpy99I CGWCG 2 cut(s) 714, 1133
HpyAV CCTTC 3 cut(s) 341, 376, 458
HpyCH4V TGCA 8 cut(s) 29, 187, 222, 512, 668, 677, 691, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 7 cut(s) 15, 46, 360, 417, 618, 887, 1071
Hsp92II CATG 4 cut(s) 374, 482, 749, 842
HspAI GCGC 1 cut(s) 628
Kpn2I TCCGGA 1 cut(s) 103
KpnI GGTACC 1 cut(s) 608
Kzo9I GATC 4 cut(s) 121, 178, 202, 430
Lsp1109I GCAGC 4 cut(s) 118, 524, 578, 652
LweI GCATC 7 cut(s) 16, 313, 326, 499, 678, 970, 1085
MaeI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
MaeIII GTNAC 3 cut(s) 350, 651, 826
MalI GATC 4 cut(s) 123, 180, 204, 432
MboI GATC 4 cut(s) 121, 178, 202, 430
MboII GAAGA 8 cut(s) 68, 321, 416, 425, 510, 713, 1081, 1095
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 895
MluCI AATT 5 cut(s) 63, 335, 377, 803, 1077
MlyI GAGTC 1 cut(s) 1080
MnlI CCTC 8 cut(s) 52, 55, 135, 283, 446, 928, 1021, 1109
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 3 cut(s) 141, 502, 1009
MseI TTAA 3 cut(s) 438, 720, 770
MspA1I CMGCKG 3 cut(s) 254, 665, 685
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NdeI CATATG 2 cut(s) 199, 1114
NdeII GATC 4 cut(s) 121, 178, 202, 430
NheI GCTAGC 1 cut(s) 412
NlaIII CATG 4 cut(s) 374, 482, 749, 842
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 2 cut(s) 350, 651
NsbI TGCGCA 1 cut(s) 629
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 874
PciI ACATGT 1 cut(s) 838
PctI GAATGC 1 cut(s) 677
PdmI GAANNNNTTC 3 cut(s) 141, 502, 1009
PfeI GAWTC 3 cut(s) 485, 755, 1031
PkrI GCNGC 4 cut(s) 133, 514, 568, 667
PleI GAGTC 1 cut(s) 1080
PpsI GAGTC 1 cut(s) 1080
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 895
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 737
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 2 cut(s) 254, 685
RsaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 837, 1142
RsaNI GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
SacI GAGCTC 1 cut(s) 895
SaqAI TTAA 3 cut(s) 438, 720, 770
SatI GCNGC 4 cut(s) 132, 513, 567, 666
Sau3AI GATC 4 cut(s) 121, 178, 202, 430
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 1080
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 7 cut(s) 16, 313, 326, 499, 678, 970, 1085
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 83, 126
SmoI CTYRAG 2 cut(s) 83, 126
SpeI ACTAGT 1 cut(s) 1007
Sse9I AATT 5 cut(s) 63, 335, 377, 803, 1077
SsiI CCGC 1 cut(s) 663
SspMI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
SstI GAGCTC 1 cut(s) 895
StyI CCWWGG 1 cut(s) 598
TaqI TCGA 2 cut(s) 205, 874
TasI AATT 5 cut(s) 63, 335, 377, 803, 1077
TatI WGTACW 4 cut(s) 18, 97, 367, 1140
TfiI GAWTC 3 cut(s) 485, 755, 1031
Tru1I TTAA 3 cut(s) 438, 720, 770
Tru9I TTAA 3 cut(s) 438, 720, 770
TscAI CASTG 2 cut(s) 189, 224
TseFI GTSAC 2 cut(s) 350, 651
TseI GCWGC 4 cut(s) 131, 512, 566, 665
Tsp45I GTSAC 2 cut(s) 350, 651
TspDTI ATGAA 3 cut(s) 467, 897, 1038
TspGWI ACGGA 2 cut(s) 698, 985
TspRI CASTG 2 cut(s) 189, 224
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 842
XmaJI CCTAGG 1 cut(s) 598
XmnI GAANNNNTTC 3 cut(s) 141, 502, 1009
XspI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.