Rw6G029370

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006636
Physical Location & Seq
Forward (+)
53479569 .. 53485706
6138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029370.1

Sequence Viewer

Length: 2979 bp
ATGAAGAAAGGGAAGGGGAGGAACAACGGCGGCTTGTTGCCGAGCTCGCTGAGGATCATATCGTCGTGCCTCAAGACTGTTTCGACGAATGCCAGCACCGTCGCTTCTACGGTTCGCTCCGCCAGTGCGTCCGTCGCTGCTTCTATTTCTGCTTCGGAGGATCAGAAGGATCAGGTAACCTGGGCTGGCTTTGACAGGCTAGAGCTTGGTCATTCTGCCTTCAAACGCGTTCTGTTGCTTGGTTATCAGAACGGATTTCAAGTTTTTGACGTCGAGGATGCCTCTAACTACAGCGAACTGGTTTCAAAGCGTGATGGCCCAGTTTCGTTCTTACAGATGCAGCCCTATCCTGCAGCATCTGATGATGATGAGGAGGGATTTAGAGCTTCTCATCCTATGTTGCTGGTTGTTGCTGGAGATGACACCAATGGTTCAGGCGTTGTTCAAAATCACAGCAACTTGGGAGGCTTAGGAAGAGATGGTCATTTGGAGTCTCGGCCAGGAAACCCTTTCAGCTCTCCCACAGCTGTTCGGTTTTACTCGCTCAGGTCCCACAGTTATGTGCATGTTCTGAGATTTCGGTCTGCTGTCTGTATGATTAGATGCAGTCCTCGGATAGTAGCTGTTGGTCTTGCAAGTCAAATATATTGCTTTGATGCGCTCACCCTCGAAAATAAATTCAGTGTTCTTACCTATCCTGTTCCTCAGCTAGCAGGACAAGGATCCTCTGGGTTTAACGTAGGTTATGGCCCAATGGCTGTGGGTCCTAGGTGGCTAGCTTATGCTTCCAACAGCCCACTCATGTCAAACACAAGTCGCTTAGGTCCCCACAATCTTACTCCTTCTCCAGGAGTTAGTCCATCTACATCACCTGGTAATGGTAGTTACATGGCTCGTTATGCAATGGAGTCTAGTAAACAGCTGGCCGCTGGAATTATCAACCTGGGTGACATGGGATGCAAAACCTTGTACAAATACTGTCAAGAGCTCCTCCCAGATGGGTCTAGTTCTCCAGTATCATCAAATTCAGGCTGGAAAGTTAGCAGGCTTGCCGGAACAGAAATGGATAGTGCTGGGATGGTTGTTGTCAAAGATTTTGTTACCCGAGCTGTTATATCGCAGTTTAAAGCTCATACTAGTCCAATATCTGCACTGTGTTTTGATCCCAGTGGGACCCTTCTTGTTACTGCCTCAATATATGGAAATAACATTAATATTTTTCGGATAATGCCTTCATGCAAACGCAATGGATCAGGCGTTCAGAACATGAATTGGAGCTCGTCTCATGTGCATCTATACAAACTGCATCGTGGAATAACATCAGCTATGATCCAGGACATTTGCTTTAGTCATTATTCTCAATGGGTTGCAATTGTTTCATCCAAGGGGACCTGCCATGTTTTTGTTTTATCCCCTTTTGGTGGTGATACTGGATTTCAAGTTCAACATTCCCAGGGTGAAGAACCCACACTATATCCAGTTTTATCTCTTCCTTGGTGGTCTACTTCTTCTTGCATCATGAGTCAACAATCTTTTCCACCCCCACCGCCTGTTGTTCTTTCAGTTGTGAGCAGAATAAAGTATAGTAGTTTTGGATGGCTTAGCACAGTCAACAATGCCGCTGGTTCCACCACAGGAAAGGTATTTGTACCATCAGGTGCTGTTGCGGCTGTTTTTCATAATTCCCTTTCTCAAAGTGTTCAGCACAGTAACTCAAGGGCTGGTACCTTGGAGCATCTATTAGTTTATACTCCATCAGGTCATGTAGTTCAACATGAACTTCAGCCAAGAGTAGGGGTAGAACAAAGTCATAGTGGTTTGAATACCCAGACAGCTACATACATGCACATGCAGGAGGAAGACCTGAGAGTGAAAGTTGAACCTATACAGTGGTGGGATGTATGCAGACGTTCAGATTGGCCAGAAAGAGAGGACTGTATTTTAGGAATTAACGCTGATCGTCAAGATGTGGCTGAAACAATTCAAAGTAAATCAGGTTCTGATGGTACTTATGCATTGGAGTTTCTTGACTTAAATGGTGGTGTTGAGGGGAAAAGGAACCTGGAAACGCATAGGTCCAGGAATATTTCTAATGCAGAGGTGCAAATAAATTCTTTCAGATTACCAATATGGCAAAAGTCGAAGATTTGTTTTTATACAATGGAGTGTCAAGGAGTTGATAGTTTTTCTGGTGGAGAGTTTGAAGTTGAAAAAGTCCCTGTTCATGAAATTGAAATGAGACAGAAGGAATTGTTGCCTGTGTTTCACCAATTCCATAGCATCAAATCAAGCTGGAATGATAGAGGTCTAGTTGGAAAAAATTCAAATCATTCTTCGTCAGAATCTCATCAAGCTGAAGGCAAGATCTCAGAAGAGACTGTTATTTGTCACTCAAACCCTGCATCACTTAGCTCCACAGAAAGCTCAGATGGGGGTTCATCAAGAAGAATTGAGCATTCACTAGATTTCGATCAAATCAACAGTGATCTACCCCGCTCTCCCATTTTTCAGACTTTGAATTGCCCGGAAAGGAGAGCAAATGCTATTCTTGAGTCTTCATTTCAAAACCATACATCTCTCGGCACTCTGTGTGCTCCATCTGAACATTTTAAGAACATTGGTTCTCAAGTCGGGAGTTGCGCTGTATTAGAAAGTAAGCTTCTCCCAGTAGGTAGATTCTGTGCTGAAGAAGGCCTGTCAGTGAAAAAAATTGGGATGAGTGAGGACACAGATTTATACACGGATCAACATGCTTCAAGTACTGTTCTTGTGACAGAGGGGGATTCCAATCTGCAGCGTCCAATAGATCTTTCGCAGTTTTTCCAGGAGGGGCATTGTAAGGCATTGGAGCAGAATGGATGCCTATCTGGAGTCATAACCGATGATAGTGATGGTAGCCAATGCGATAAGGGGAAACCTGACGATGAAGAAAATAGTGAAATGCTTGGAGGCATGTTCGCCTTTTCTGATGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

992

Amino Acids

107.77

Weight (kDa)

5.96

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 175 - 480 2.5e-31 BCAS3, WD40 repeat
BCAS3 PF12490 615 - 756 1.2e-42 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 1400
Acc65I GGTACC 1 cut(s) 1724
AccB1I GGYRCC 1 cut(s) 1724
AccBSI CCGCTC 1 cut(s) 2496
AccI GTMKAC 1 cut(s) 1502
AccII CGCG 1 cut(s) 228
AciI CCGC 7 cut(s) 30, 120, 927, 1547, 1620, 1667, 2494
AclWI GGATC 9 cut(s) 62, 168, 177, 717, 730, 1157, 1258, 1324, 2751
AcoI YGGCCR 3 cut(s) 497, 924, 1919
AcsI RAATTY 4 cut(s) 677, 1024, 2110, 2320
AcuI CTGAAG 3 cut(s) 1766, 2376, 2706
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 2589
AfaI GTAC 5 cut(s) 971, 1650, 1726, 2008, 2761
AfiI CCNNNNNNNGG 4 cut(s) 848, 878, 1421, 1793
AflIII ACRYGT 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 2794, 2826
AloI GAACNNNNNNTCC 4 cut(s) 1242, 1274, 1425, 1457
Alw21I GWGCWC 4 cut(s) 47, 990, 1280, 2596
Alw26I GTCTC 4 cut(s) 498, 1287, 2233, 2369
AlwI GGATC 9 cut(s) 62, 168, 177, 717, 730, 1157, 1258, 1324, 2751
AlwNI CAGNNNCTG 3 cut(s) 359, 1661, 2000
Ama87I CYCGRG 1 cut(s) 1104
AoxI GGCC 6 cut(s) 316, 497, 748, 924, 1919, 2692
ApeKI GCWGC 4 cut(s) 137, 340, 353, 2794
ApoI RAATTY 4 cut(s) 677, 1024, 2110, 2320
AseI ATTAAT 1 cut(s) 1212
Asp700I GAANNNNTTC 2 cut(s) 1980, 2320
Asp718I GGTACC 1 cut(s) 1724
AspA2I CCTAGG 1 cut(s) 767
AspLEI GCGC 2 cut(s) 661, 2642
AspS9I GGNCC 8 cut(s) 317, 549, 749, 764, 824, 1173, 1389, 2076
AsuC2I CCSGG 1 cut(s) 2525
AsuHPI GGTGA 6 cut(s) 655, 861, 959, 1436, 1469, 2258
AsuNHI GCTAGC 2 cut(s) 709, 775
AvaI CYCGRG 1 cut(s) 1104
AvaII GGWCC 6 cut(s) 549, 764, 824, 1173, 1389, 2076
AvrII CCTAGG 1 cut(s) 767
BalI TGGCCA 1 cut(s) 1921
BamHI GGATCC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 1724
BanII GRGCYC 3 cut(s) 47, 990, 1280
BbsI GAAGAC 2 cut(s) 1866, 2547
Bbv12I GWGCWC 4 cut(s) 47, 990, 1280, 2596
BbvCI CCTCAGC 2 cut(s) 50, 705
BbvI GCAGC 4 cut(s) 124, 352, 365, 2806
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 2525
BcoDI GTCTC 4 cut(s) 498, 1287, 2233, 2369
BcuI ACTAGT 1 cut(s) 1136
BfaI CTAG 9 cut(s) 200, 710, 768, 776, 912, 1005, 1137, 2309, 2462
BfmI CTRYAG 3 cut(s) 289, 351, 2792
BfuAI ACCTGC 1 cut(s) 1400
BglII AGATCT 2 cut(s) 2364, 2806
BisI GCNGC 8 cut(s) 31, 138, 341, 354, 927, 1620, 1668, 2795
BlnI CCTAGG 1 cut(s) 767
BlpI GCTNAGC 1 cut(s) 1601
BlsI GCNGC 8 cut(s) 32, 139, 342, 355, 928, 1621, 1669, 2796
BmcAI AGTACT 1 cut(s) 2761
Bme18I GGWCC 6 cut(s) 549, 764, 824, 1173, 1389, 2076
BmeT110I CYCGRG 1 cut(s) 1104
BmgT120I GGNCC 8 cut(s) 317, 549, 749, 764, 824, 1173, 1389, 2076
BmrI ACTGGG 3 cut(s) 314, 1161, 2660
BmtI GCTAGC 2 cut(s) 713, 779
BmuI ACTGGG 3 cut(s) 314, 1161, 2660
BpiI GAAGAC 2 cut(s) 1866, 2547
BplI GAGNNNNNCTC 4 cut(s) 266, 298, 1267, 1299
BpmI CTGGAG 4 cut(s) 435, 831, 996, 2889
Bpu10I CCTNAGC 5 cut(s) 50, 469, 545, 705, 820
Bpu1102I GCTNAGC 1 cut(s) 1601
BpuEI CTTGAG 4 cut(s) 56, 1699, 2570, 2610
BpuMI CCSGG 1 cut(s) 2525
BsaBI GATNNNNATC 3 cut(s) 2469, 2787, 2863
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 9 cut(s) 180, 611, 767, 943, 1383, 1452, 1453, 1493, 1728
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 848, 878, 1421, 1793
Bse1I ACTGG 8 cut(s) 123, 303, 320, 1013, 1167, 1435, 1478, 2666
Bse3DI GCAATG 2 cut(s) 909, 1252
Bse8I GATNNNNATC 3 cut(s) 2469, 2787, 2863
BseDI CCNNGG 9 cut(s) 180, 611, 767, 943, 1383, 1452, 1453, 1493, 1728
BseGI GGATG 9 cut(s) 283, 391, 962, 1083, 1379, 1601, 1903, 2721, 2864
BseJI GATNNNNATC 3 cut(s) 2469, 2787, 2863
BseLI CCNNNNNNNGG 4 cut(s) 848, 878, 1421, 1793
BseMI GCAATG 2 cut(s) 909, 1252
BseMII CTCAG 7 cut(s) 41, 559, 563, 719, 1856, 2382, 2439
BseNI ACTGG 8 cut(s) 123, 303, 320, 1013, 1167, 1435, 1478, 2666
BseRI GAGGAG 2 cut(s) 386, 980
BseXI GCAGC 4 cut(s) 124, 352, 365, 2806
BseYI CCCAGC 1 cut(s) 1073
BsgI GTGCAG 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 6 cut(s) 318, 499, 750, 926, 1921, 2694
BshNI GGYRCC 1 cut(s) 1724
BsiHKAI GWGCWC 4 cut(s) 47, 990, 1280, 2596
BsiHKCI CYCGRG 1 cut(s) 1104
BsiSI CCGG 2 cut(s) 1053, 2525
BslFI GGGAC 5 cut(s) 535, 810, 1186, 1402, 2201
BslI CCNNNNNNNGG 4 cut(s) 848, 878, 1421, 1793
BsmAI GTCTC 4 cut(s) 498, 1287, 2233, 2369
BsmBI CGTCTC 1 cut(s) 1287
BsmFI GGGAC 5 cut(s) 535, 810, 1186, 1402, 2201
BsmI GAATGC 2 cut(s) 94, 2455
BsnI GGCC 6 cut(s) 318, 499, 750, 926, 1921, 2694
BsoBI CYCGRG 1 cut(s) 1104
Bsp1286I GDGCHC 4 cut(s) 47, 990, 1280, 2596
Bsp1407I TGTACA 1 cut(s) 969
Bsp1720I GCTNAGC 1 cut(s) 1601
BspACI CCGC 7 cut(s) 30, 120, 927, 1547, 1620, 1667, 2494
BspANI GGCC 6 cut(s) 318, 499, 750, 926, 1921, 2694
BspCNI CTCAG 7 cut(s) 42, 558, 564, 718, 1857, 2381, 2438
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 1518, 2224
BspMAI CTGCAG 2 cut(s) 355, 2796
BspMI ACCTGC 1 cut(s) 1400
BspOI GCTAGC 2 cut(s) 713, 779
BspPI GGATC 9 cut(s) 62, 168, 177, 717, 730, 1157, 1258, 1324, 2751
BspT107I GGYRCC 1 cut(s) 1724
BsrBI CCGCTC 1 cut(s) 2496
BsrDI GCAATG 2 cut(s) 909, 1252
BsrGI TGTACA 1 cut(s) 969
BsrI ACTGG 8 cut(s) 123, 303, 320, 1013, 1167, 1435, 1478, 2666
BssECI CCNNGG 9 cut(s) 180, 611, 767, 943, 1383, 1452, 1453, 1493, 1728
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 4 cut(s) 767, 1383, 1493, 1728
Bst6I CTCTTC 3 cut(s) 469, 1494, 2367
BstACI GRCGYC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 969
BstC8I GCNNGC 8 cut(s) 47, 94, 187, 711, 777, 924, 1046, 1050
BstEII GGTNACC 1 cut(s) 175
BstENI CCTNNNNNAGG 1 cut(s) 846
BstF5I GGATG 9 cut(s) 283, 391, 962, 1083, 1379, 1601, 1903, 2721, 2864
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 661, 2642
BstMAI GTCTC 4 cut(s) 498, 1287, 2233, 2369
BstMWI GCNNNNNNNGC 4 cut(s) 46, 134, 899, 1667
BstNSI RCATGY 5 cut(s) 569, 1846, 1852, 2753, 2956
BstPI GGTNACC 1 cut(s) 175
BstSFI CTRYAG 3 cut(s) 289, 351, 2792
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 124, 352, 365, 2806
BstV2I GAAGAC 2 cut(s) 1866, 2547
BstX2I RGATCY 3 cut(s) 722, 2364, 2806
BstYI RGATCY 3 cut(s) 722, 2364, 2806
BsuRI GGCC 6 cut(s) 318, 499, 750, 926, 1921, 2694
BtsCI GGATG 9 cut(s) 283, 391, 962, 1083, 1379, 1601, 1903, 2721, 2864
BtsIMutI CAGTG 7 cut(s) 130, 688, 1151, 1174, 1895, 2488, 2706
BveI ACCTGC 1 cut(s) 1400
Cac8I GCNNGC 8 cut(s) 47, 94, 187, 711, 777, 924, 1046, 1050
CaiI CAGNNNCTG 3 cut(s) 359, 1661, 2000
CciI TCATGA 2 cut(s) 1518, 2224
CfoI GCGC 2 cut(s) 661, 2642
Cfr13I GGNCC 8 cut(s) 317, 549, 749, 764, 824, 1173, 1389, 2076
CseI GACGC 2 cut(s) 117, 2786
CsiI ACCWGGT 1 cut(s) 871
Csp6I GTAC 5 cut(s) 970, 1649, 1725, 2007, 2760
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
CviQI GTAC 5 cut(s) 970, 1649, 1725, 2007, 2760
DraI TTTAAA 1 cut(s) 1126
DraIII CACNNNGTG 1 cut(s) 2589
EaeI YGGCCR 3 cut(s) 497, 924, 1919
Eam1104I CTCTTC 3 cut(s) 469, 1494, 2367
EarI CTCTTC 3 cut(s) 469, 1494, 2367
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 3 cut(s) 45, 988, 1278
Eco130I CCWWGG 4 cut(s) 767, 1383, 1493, 1728
Eco147I AGGCCT 1 cut(s) 2694
Eco24I GRGCYC 3 cut(s) 47, 990, 1280
Eco47I GGWCC 6 cut(s) 549, 764, 824, 1173, 1389, 2076
Eco53kI GAGCTC 3 cut(s) 45, 988, 1278
Eco57I CTGAAG 3 cut(s) 1766, 2376, 2706
Eco88I CYCGRG 1 cut(s) 1104
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 3 cut(s) 45, 988, 1278
EcoNI CCTNNNNNAGG 1 cut(s) 846
EcoO109I RGGNCCY 5 cut(s) 549, 764, 824, 1173, 1389
EcoO65I GGTNACC 1 cut(s) 175
EcoT14I CCWWGG 4 cut(s) 767, 1383, 1493, 1728
EcoT22I ATGCAT 1 cut(s) 2017
EcoT38I GRGCYC 3 cut(s) 47, 990, 1280
ErhI CCWWGG 4 cut(s) 767, 1383, 1493, 1728
Esp3I CGTCTC 1 cut(s) 1287
FaqI GGGAC 5 cut(s) 535, 810, 1186, 1402, 2201
FauI CCCGC 1 cut(s) 2501
FblI GTMKAC 1 cut(s) 1502
Fnu4HI GCNGC 8 cut(s) 31, 138, 341, 354, 927, 1620, 1668, 2795
FokI GGATG 9 cut(s) 290, 378, 969, 1090, 1366, 1608, 1910, 2728, 2871
FriOI GRGCYC 3 cut(s) 47, 990, 1280
Fsp4HI GCNGC 8 cut(s) 31, 138, 341, 354, 927, 1620, 1668, 2795
FspBI CTAG 9 cut(s) 200, 710, 768, 776, 912, 1005, 1137, 2309, 2462
GlaI GCGC 2 cut(s) 660, 2641
GluI GCNGC 8 cut(s) 31, 138, 341, 354, 927, 1620, 1668, 2795
GsaI CCCAGC 1 cut(s) 1077
GsuI CTGGAG 4 cut(s) 435, 831, 996, 2889
HaeIII GGCC 6 cut(s) 318, 499, 750, 926, 1921, 2694
HapII CCGG 2 cut(s) 1053, 2525
HgaI GACGC 2 cut(s) 117, 2786
HhaI GCGC 2 cut(s) 661, 2642
Hin1I GRCGYC 1 cut(s) 270
Hin6I GCGC 2 cut(s) 659, 2640
HinP1I GCGC 2 cut(s) 659, 2640
HincII GTYRAC 2 cut(s) 1526, 1612
HindII GTYRAC 2 cut(s) 1526, 1612
HindIII AAGCTT 1 cut(s) 2657
HinfI GANTC 8 cut(s) 491, 908, 1522, 2342, 2552, 2676, 2783, 2871
HpaII CCGG 2 cut(s) 1053, 2525
HphI GGTGA 6 cut(s) 655, 861, 959, 1436, 1469, 2258
Hpy166II GTNNAC 4 cut(s) 917, 1503, 1526, 1612
Hpy8I GTNNAC 4 cut(s) 917, 1503, 1526, 1612
Hpy99I CGWCG 5 cut(s) 67, 88, 104, 137, 275
HpyCH4IV ACGT 3 cut(s) 270, 738, 1909
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 134, 899, 1667
HpySE526I ACGT 3 cut(s) 270, 738, 1909
Hsp92I GRCGYC 1 cut(s) 270
HspAI GCGC 2 cut(s) 659, 2640
KflI GGGWCCC 1 cut(s) 1173
KpnI GGTACC 1 cut(s) 1728
LmnI GCTCC 7 cut(s) 122, 993, 1275, 1732, 2417, 2599, 2848
Lsp1109I GCAGC 4 cut(s) 124, 352, 365, 2806
MabI ACCWGGT 1 cut(s) 871
MaeI CTAG 9 cut(s) 200, 710, 768, 776, 912, 1005, 1137, 2309, 2462
MaeII ACGT 3 cut(s) 270, 738, 1909
MaeIII GTNAC 8 cut(s) 175, 884, 947, 1099, 1183, 1709, 2387, 2770
MbiI CCGCTC 1 cut(s) 2496
MfeI CAATTG 1 cut(s) 1371
MflI RGATCY 3 cut(s) 722, 2364, 2806
MhlI GDGCHC 4 cut(s) 47, 990, 1280, 2596
MlsI TGGCCA 1 cut(s) 1921
MluI ACGCGT 1 cut(s) 226
MluNI TGGCCA 1 cut(s) 1921
MlyI GAGTC 5 cut(s) 500, 917, 1531, 2561, 2880
MmeI TCCRAC 2 cut(s) 813, 2293
Mox20I TGGCCA 1 cut(s) 1921
Mph1103I ATGCAT 1 cut(s) 2017
MroXI GAANNNNTTC 2 cut(s) 1980, 2320
MscI TGGCCA 1 cut(s) 1921
MseI TTAA 7 cut(s) 735, 1125, 1212, 1950, 2033, 2610, 2977
MslI CAYNNNNRTG 2 cut(s) 558, 1847
Msp20I TGGCCA 1 cut(s) 1921
MspA1I CMGCKG 4 cut(s) 527, 922, 929, 1622
MspI CCGG 2 cut(s) 1053, 2525
MunI CAATTG 1 cut(s) 1371
Mva1269I GAATGC 2 cut(s) 94, 2455
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 46, 134, 899, 1667
NciI CCSGG 1 cut(s) 2525
NheI GCTAGC 2 cut(s) 709, 775
NmeAIII GCCGAG 3 cut(s) 66, 475, 2559
NmuCI GTSAC 3 cut(s) 947, 2387, 2770
NsiI ATGCAT 1 cut(s) 2017
NspI RCATGY 5 cut(s) 569, 1846, 1852, 2753, 2956
PagI TCATGA 2 cut(s) 1518, 2224
PasI CCCWGGG 1 cut(s) 1453
PceI AGGCCT 1 cut(s) 2694
PctI GAATGC 2 cut(s) 94, 2455
PdmI GAANNNNTTC 2 cut(s) 1980, 2320
PfeI GAWTC 3 cut(s) 2342, 2676, 2783
PfoI TCCNGGA 4 cut(s) 847, 1332, 2078, 2823
PkrI GCNGC 8 cut(s) 32, 139, 342, 355, 928, 1621, 1669, 2796
PleI GAGTC 5 cut(s) 499, 916, 1530, 2560, 2879
PpsI GAGTC 5 cut(s) 499, 916, 1530, 2560, 2879
PpuMI RGGWCCY 5 cut(s) 549, 764, 824, 1173, 1389
PshBI ATTAAT 1 cut(s) 1212
Psp124BI GAGCTC 3 cut(s) 47, 990, 1280
Psp5II RGGWCCY 5 cut(s) 549, 764, 824, 1173, 1389
PspEI GGTNACC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 1073
PspPI GGNCC 8 cut(s) 317, 549, 749, 764, 824, 1173, 1389, 2076
PspPPI RGGWCCY 5 cut(s) 549, 764, 824, 1173, 1389
PsrI GAACNNNNNNTAC 2 cut(s) 1981, 2013
PstI CTGCAG 2 cut(s) 355, 2796
PstNI CAGNNNCTG 3 cut(s) 359, 1661, 2000
PsuI RGATCY 3 cut(s) 722, 2364, 2806
PvuII CAGCTG 2 cut(s) 527, 922
RsaI GTAC 5 cut(s) 971, 1650, 1726, 2008, 2761
RsaNI GTAC 5 cut(s) 970, 1649, 1725, 2007, 2760
RseI CAYNNNNRTG 2 cut(s) 558, 1847
SacI GAGCTC 3 cut(s) 47, 990, 1280
SaqAI TTAA 7 cut(s) 735, 1125, 1212, 1950, 2033, 2610, 2977
SatI GCNGC 8 cut(s) 31, 138, 341, 354, 927, 1620, 1668, 2795
Sau96I GGNCC 8 cut(s) 317, 549, 749, 764, 824, 1173, 1389, 2076
ScaI AGTACT 1 cut(s) 2761
SchI GAGTC 5 cut(s) 500, 917, 1531, 2561, 2880
SduI GDGCHC 4 cut(s) 47, 990, 1280, 2596
SexAI ACCWGGT 1 cut(s) 871
SfcI CTRYAG 3 cut(s) 289, 351, 2792
SinI GGWCC 6 cut(s) 549, 764, 824, 1173, 1389, 2076
SmiMI CAYNNNNRTG 2 cut(s) 558, 1847
SmlI CTYRAG 4 cut(s) 71, 1714, 2549, 2625
SmoI CTYRAG 4 cut(s) 71, 1714, 2549, 2625
SpeI ACTAGT 1 cut(s) 1136
SseBI AGGCCT 1 cut(s) 2694
SsiI CCGC 7 cut(s) 30, 120, 927, 1547, 1620, 1667, 2494
SspI AATATT 2 cut(s) 1216, 2086
SspMI CTAG 9 cut(s) 200, 710, 768, 776, 912, 1005, 1137, 2309, 2462
SstI GAGCTC 3 cut(s) 47, 990, 1280
StuI AGGCCT 1 cut(s) 2694
StyI CCWWGG 4 cut(s) 767, 1383, 1493, 1728
TaiI ACGT 3 cut(s) 273, 741, 1912
TaqI TCGA 5 cut(s) 83, 273, 669, 2141, 2469
TaqII GACCGA 1 cut(s) 570
TatI WGTACW 2 cut(s) 969, 2759
TauI GCSGC 4 cut(s) 33, 929, 1622, 1670
TfiI GAWTC 3 cut(s) 2342, 2676, 2783
Tru1I TTAA 7 cut(s) 735, 1125, 1212, 1950, 2033, 2610, 2977
Tru9I TTAA 7 cut(s) 735, 1125, 1212, 1950, 2033, 2610, 2977
TscAI CASTG 7 cut(s) 130, 688, 1158, 1174, 1895, 2488, 2706
TseFI GTSAC 3 cut(s) 947, 2387, 2770
TseI GCWGC 4 cut(s) 137, 340, 353, 2794
Tsp45I GTSAC 3 cut(s) 947, 2387, 2770
TspGWI ACGGA 3 cut(s) 121, 267, 2756
TspRI CASTG 7 cut(s) 130, 688, 1158, 1174, 1895, 2488, 2706
VpaK11BI GGWCC 6 cut(s) 549, 764, 824, 1173, 1389, 2076
VspI ATTAAT 1 cut(s) 1212
XagI CCTNNNNNAGG 1 cut(s) 846
XapI RAATTY 4 cut(s) 677, 1024, 2110, 2320
XceI RCATGY 5 cut(s) 569, 1846, 1852, 2753, 2956
XmaJI CCTAGG 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 1502
XmnI GAANNNNTTC 2 cut(s) 1980, 2320
XspI CTAG 9 cut(s) 200, 710, 768, 776, 912, 1005, 1137, 2309, 2462
ZraI GACGTC 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 2761
Zsp2I ATGCAT 1 cut(s) 2017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.