FvH4_2g25290

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015549
Physical Location & Seq
Forward (+)
20573129 .. 20574366
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25290.t1

Sequence Viewer

Length: 951 bp
ATGGCTCCTTCAATTTCCACTTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTACCTCAACCTCATTCATCACCAGGTCACGAGTACTCTGGATACTATTAGTCCCCCTAGCTGCGCACCCATTGATGCAGCTGATGTTGATCGCATGCAGTTTGCCATGAACTTAGAATATTTGGAAGCCGAGTTCTTTCTGTCCGGCGCTACTGGCCTCGGCCTCGACAGCTACGCTCCGGGTTTTTCCGGAGGTGGTCCGCCTCCCATCGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGCATCATTGAGGAGATGGGTTATCAACAAATGGGTAACATCAGGACTATGGTTGAGACTGTGGGAGGAATTAAAAGGCCTCTAATTGATGTAGGACGCGTAAATTGGGGAATAATCTTTAACCTAGCATTGAAGACAACCCTAATCCCTCCATTCAATCCATACGAAAACTCACTCAATTTTCTGTTAGCCGCCTATACCATGCCTTATCTCGCACAAGTCTCCTATGTCAACTCCATTCCGAGCCTCACCACAAATTCTCCTTCATTATCTTTGGCTGCAAAGCTTTTGCCGATCAAGGCTGGACAAAATGCAGTGCTACGTACGTTGTTGTATCAGAAAGCTACTCAACTGGTGCCTCCATATACTTTCACGGTGCGTGAGTTCACCAAGGCCATTGCCCAGCTCATTAACGACAATGGCAAGTGCGGCATCAAAAACGAAGGCATCTTACTAGATGACATAACCCTCGGGGCGGAGAACCGGACGACCAGTAACGTTCTGTCCGCCGATGCCAATTCGTTGTCCTACGCAAGAACAGAGCCTGAGATGTTGAGGATTGTGTACGGAACCGGCAATGAGCACCTTCCAGGAGCATTTTTCCCCTTGGGTGCAAACGGCAAAATTGCAAGGAGCTACCTCCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

317

Amino Acids

34.24

Weight (kDa)

5.95

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 46 - 213 1.3e-26 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 655
AccII CGCG 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 242
AciI CCGC 5 cut(s) 254, 492, 729, 776, 807
AclI AACGTT 1 cut(s) 798
AcsI RAATTY 1 cut(s) 556
AfaI GTAC 4 cut(s) 56, 88, 625, 866
AfiI CCNNNNNNNGG 2 cut(s) 263, 775
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 3 cut(s) 12, 433, 457
AjnI CCWGG 2 cut(s) 75, 889
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 7 cut(s) 114, 134, 225, 586, 644, 706, 936
AluI AGCT 7 cut(s) 114, 134, 225, 586, 644, 706, 936
Alw21I GWGCWC 2 cut(s) 271, 885
Alw26I GTCTC 2 cut(s) 350, 526
AlwNI CAGNNNCTG 1 cut(s) 845
Ama87I CYCGRG 1 cut(s) 770
Aor13HI TCCGGA 1 cut(s) 242
AoxI GGCC 4 cut(s) 208, 214, 377, 693
ApeKI GCWGC 3 cut(s) 114, 131, 578
ApoI RAATTY 1 cut(s) 556
AspLEI GCGC 2 cut(s) 119, 203
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 65, 541, 679
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 655
BarI GAAGNNNNNNTAC 2 cut(s) 735, 767
BauI CACGAG 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 25, 440
Bbv12I GWGCWC 2 cut(s) 271, 885
BbvI GCAGC 3 cut(s) 101, 143, 565
BccI CCATC 2 cut(s) 269, 310
BceAI ACGGC 1 cut(s) 934
BciT130I CCWGG 2 cut(s) 77, 891
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 350, 526
BfaI CTAG 3 cut(s) 111, 425, 755
BfoI RGCGCY 1 cut(s) 204
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 5 cut(s) 115, 132, 492, 579, 730
BlsI GCNGC 5 cut(s) 116, 133, 493, 580, 731
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 77, 234, 891
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 3 cut(s) 6, 657, 871
BmrFI CCNGG 3 cut(s) 77, 234, 891
BmsI GCATC 5 cut(s) 118, 312, 741, 756, 802
BpiI GAAGAC 2 cut(s) 25, 440
BpuMI CCSGG 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 211, 690, 769, 906
BsaWI WCCGGW 2 cut(s) 242, 783
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 775
Bse118I RCCGGY 1 cut(s) 872
Bse1I ACTGG 3 cut(s) 211, 657, 792
Bse3DI GCAATG 2 cut(s) 696, 883
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 242
BseBI CCWGG 2 cut(s) 77, 891
BseDI CCNNGG 4 cut(s) 211, 690, 769, 906
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 263, 775
BseMI GCAATG 2 cut(s) 696, 883
BseMII CTCAG 2 cut(s) 284, 837
BseNI ACTGG 3 cut(s) 211, 657, 792
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 101, 143, 565
BseYI CCCAGC 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 4 cut(s) 210, 216, 379, 695
BshNI GGYRCC 1 cut(s) 655
BsiHKAI GWGCWC 2 cut(s) 271, 885
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 5 cut(s) 198, 233, 243, 784, 873
BsiWI CGTACG 1 cut(s) 623
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 263, 775
BsmAI GTCTC 2 cut(s) 350, 526
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 4 cut(s) 210, 216, 379, 695
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 271, 885
Bsp13I TCCGGA 1 cut(s) 242
Bsp143I GATC 2 cut(s) 142, 594
BspACI CCGC 5 cut(s) 254, 492, 729, 776, 807
BspANI GGCC 4 cut(s) 210, 216, 379, 695
BspCNI CTCAG 2 cut(s) 283, 838
BspEI TCCGGA 1 cut(s) 242
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 6, 657, 871
BspT107I GGYRCC 1 cut(s) 655
BsrDI GCAATG 2 cut(s) 696, 883
BsrFI RCCGGY 1 cut(s) 872
BsrI ACTGG 3 cut(s) 211, 657, 792
BssAI RCCGGY 1 cut(s) 872
BssECI CCNNGG 4 cut(s) 211, 690, 769, 906
BssMI GATC 2 cut(s) 142, 594
BssSI CACGAG 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 690, 906
Bst2BI CACGAG 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 77, 891
Bst4CI ACNGT 3 cut(s) 54, 361, 676
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 166, 270, 846
BstFNI CGCG 1 cut(s) 399
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 2 cut(s) 119, 203
BstKTI GATC 2 cut(s) 145, 597
BstMAI GTCTC 2 cut(s) 350, 526
BstMBI GATC 2 cut(s) 142, 594
BstMWI GCNNNNNNNGC 4 cut(s) 207, 222, 275, 729
BstNI CCWGG 2 cut(s) 77, 891
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 3 cut(s) 75, 232, 889
BstSNI TACGTA 1 cut(s) 623
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 101, 143, 565
BstV2I GAAGAC 2 cut(s) 25, 440
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 4 cut(s) 210, 216, 379, 695
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 2 cut(s) 50, 621
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 845
CfoI GCGC 2 cut(s) 119, 203
Cfr10I RCCGGY 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 405
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 4 cut(s) 55, 87, 624, 865
CviAII CATG 3 cut(s) 148, 160, 502
CviQI GTAC 4 cut(s) 55, 87, 624, 865
DdeI CTNAG 3 cut(s) 166, 270, 846
DpnI GATC 2 cut(s) 144, 596
DpnII GATC 2 cut(s) 142, 594
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 3 cut(s) 243, 791, 796
Eco105I TACGTA 1 cut(s) 623
Eco130I CCWWGG 2 cut(s) 690, 906
Eco147I AGGCCT 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 75, 889
EcoT14I CCWWGG 2 cut(s) 690, 906
ErhI CCWWGG 2 cut(s) 690, 906
FaeI CATG 3 cut(s) 151, 163, 505
FaqI GGGAC 1 cut(s) 90
FatI CATG 3 cut(s) 147, 159, 501
Fnu4HI GCNGC 5 cut(s) 115, 132, 492, 579, 730
Fsp4HI GCNGC 5 cut(s) 115, 132, 492, 579, 730
FspBI CTAG 3 cut(s) 111, 425, 755
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 2 cut(s) 118, 202
GluI GCNGC 5 cut(s) 115, 132, 492, 579, 730
GsaI CCCAGC 1 cut(s) 706
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 4 cut(s) 210, 216, 379, 695
HapII CCGG 5 cut(s) 198, 233, 243, 784, 873
HgaI GACGC 1 cut(s) 405
HhaI GCGC 2 cut(s) 119, 203
Hin1II CATG 3 cut(s) 151, 163, 505
Hin6I GCGC 2 cut(s) 117, 201
HinP1I GCGC 2 cut(s) 117, 201
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 1 cut(s) 280
HpaII CCGG 5 cut(s) 198, 233, 243, 784, 873
HphI GGTGA 3 cut(s) 65, 541, 679
Hpy166II GTNNAC 3 cut(s) 532, 687, 865
Hpy188I TCNGA 3 cut(s) 273, 543, 639
Hpy188III TCNNGA 5 cut(s) 82, 92, 243, 284, 343
Hpy8I GTNNAC 3 cut(s) 532, 687, 865
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 5 cut(s) 18, 268, 573, 737, 896
HpyCH4III ACNGT 3 cut(s) 54, 361, 676
HpyCH4IV ACGT 3 cut(s) 622, 626, 798
HpyCH4V TGCA 7 cut(s) 50, 131, 151, 581, 614, 914, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 222, 275, 729
HpyF3I CTNAG 3 cut(s) 166, 270, 846
HpySE526I ACGT 3 cut(s) 622, 626, 798
Hsp92II CATG 3 cut(s) 151, 163, 505
HspAI GCGC 2 cut(s) 117, 201
Kpn2I TCCGGA 1 cut(s) 242
Kzo9I GATC 2 cut(s) 142, 594
LmnI GCTCC 4 cut(s) 10, 235, 893, 933
Lsp1109I GCAGC 3 cut(s) 101, 143, 565
LweI GCATC 5 cut(s) 118, 312, 741, 756, 802
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 3 cut(s) 111, 425, 755
MaeII ACGT 3 cut(s) 622, 626, 798
MaeIII GTNAC 3 cut(s) 79, 335, 794
MalI GATC 2 cut(s) 144, 596
MboI GATC 2 cut(s) 142, 594
MboII GAAGA 4 cut(s) 18, 25, 35, 445
MhlI GDGCHC 2 cut(s) 271, 885
MluCI AATT 8 cut(s) 12, 369, 384, 403, 478, 556, 817, 924
MluI ACGCGT 1 cut(s) 397
MroI TCCGGA 1 cut(s) 242
MseI TTAA 3 cut(s) 372, 420, 711
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 5 cut(s) 198, 233, 243, 784, 873
MspR9I CCNGG 3 cut(s) 77, 234, 891
MvaI CCWGG 2 cut(s) 77, 891
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 4 cut(s) 207, 222, 275, 729
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 142, 594
NlaIII CATG 3 cut(s) 151, 163, 505
NlaIV GGNNCC 3 cut(s) 6, 657, 871
NmeAIII GCCGAG 2 cut(s) 192, 208
NmuCI GTSAC 1 cut(s) 79
NsbI TGCGCA 1 cut(s) 118
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
PceI AGGCCT 1 cut(s) 379
PfeI GAWTC 1 cut(s) 280
Pfl23II CGTACG 1 cut(s) 623
PfoI TCCNGGA 1 cut(s) 889
PkrI GCNGC 5 cut(s) 116, 133, 493, 580, 731
Ppu21I YACGTR 1 cut(s) 623
Psp1406I AACGTT 1 cut(s) 798
Psp6I CCWGG 2 cut(s) 75, 889
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 2 cut(s) 75, 889
PspLI CGTACG 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 6, 657, 871
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 4 cut(s) 56, 88, 625, 866
RsaNI GTAC 4 cut(s) 55, 87, 624, 865
SaqAI TTAA 3 cut(s) 372, 420, 711
SatI GCNGC 5 cut(s) 115, 132, 492, 579, 730
Sau3AI GATC 2 cut(s) 142, 594
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 77, 234, 891
SduI GDGCHC 2 cut(s) 271, 885
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 5 cut(s) 118, 312, 741, 756, 802
SinI GGWCC 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 623
SphI GCATGC 1 cut(s) 151
Sse9I AATT 8 cut(s) 12, 369, 384, 403, 478, 556, 817, 924
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 5 cut(s) 254, 492, 729, 776, 807
SspI AATATT 1 cut(s) 173
SspMI CTAG 3 cut(s) 111, 425, 755
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 75, 232, 889
StyI CCWWGG 2 cut(s) 690, 906
TaaI ACNGT 3 cut(s) 54, 361, 676
TaiI ACGT 3 cut(s) 625, 629, 801
TaqI TCGA 2 cut(s) 219, 285
TasI AATT 8 cut(s) 12, 369, 384, 403, 478, 556, 817, 924
TatI WGTACW 1 cut(s) 86
TauI GCSGC 2 cut(s) 494, 732
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 3 cut(s) 372, 420, 711
Tru9I TTAA 3 cut(s) 372, 420, 711
TscAI CASTG 2 cut(s) 57, 621
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 114, 131, 578
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 59, 176, 555
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 2 cut(s) 57, 621
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 151
XspI CTAG 3 cut(s) 111, 425, 755
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.