RLG00000014581

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015549
Physical Location & Seq
Forward (+)
55029926 .. 55031853
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014581

Sequence Viewer

Length: 963 bp
ATGGCTCCTTCAATTTCTAATTTCCCTTCTGTCTTCCTTGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCAGATTGCTATTAATATCACTATCAGTCCCCCTAACAACTGCGGGCCCATTAATGCCGCCGATGTCGATCGCGTTCAGTTTGCCTTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGATTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCGGAAGGCCTTGCTTCTCAATCCTGATGTCGCTCGTATCAGTGAAGAGATTGCTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGAATTCCAAGGCCTCTACTAAATCTCGGCCTCATAAATTGGGGATTATTCTTTGACCTAGCACTGGGGAAACCCCTTATCCCTTCATTTAATCCATACGCAAACTCCCTTAATTTTCTGTTAGGGGCCTATGCCATGCCTGATCTCGCACAACTATCCTATGTTAGCTCCATTCCAAGCCTCAGCACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGGCAATCAAGGCTGGACAGAGTGCAGTGATACGTACATTGTTGTACCGGAATGCAACTCAAGTGGTGCCTCCATATAGTATCACCGTGCGTGAATTCACCGAGGCCATTTCCCAGTTCACTAACAAACTTGGAAAGTGTGGCATCAAAAGCGAAGGCATCTTACTAGCTGACACAACCCTCGGGGCAGAGAACCGGACGACCAGTAACGTTTTGTCCGCCGATGCCAATTCACTATCGTACGCAAGAACAGAGCGTGAGATCTTGAGGATTGTGTATGGAACCGGCAATGAGCGCCTGCCCTTCGGATTTTTTCCGTTAGGTGCCAACGGCAAAATTGCAAGGAGCTTTCTGCTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

321

Amino Acids

34.35

Weight (kDa)

8.72

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 49 - 216 5.3e-22 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 667, 923
AccII CGCG 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 4 cut(s) 126, 141, 263, 819
AclI AACGTT 1 cut(s) 810
AcsI RAATTY 4 cut(s) 179, 381, 568, 695
AfaI GTAC 3 cut(s) 637, 647, 842
AfiI CCNNNNNNNGG 2 cut(s) 272, 442
AgsI TTSAA 3 cut(s) 12, 172, 594
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 5 cut(s) 191, 546, 598, 770, 948
AluI AGCT 5 cut(s) 191, 546, 598, 770, 948
Alw21I GWGCWC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 9 cut(s) 61, 128, 223, 249, 285, 389, 406, 504, 705
ApaI GGGCCC 1 cut(s) 132
ApoI RAATTY 4 cut(s) 179, 381, 568, 695
AseI ATTAAT 2 cut(s) 96, 135
AspLEI GCGC 2 cut(s) 212, 897
AspS9I GGNCC 5 cut(s) 128, 129, 250, 260, 504
AsuHPI GGTGA 3 cut(s) 62, 676, 691
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 2 cut(s) 667, 923
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 280
BbvCI CCTCAGC 1 cut(s) 560
BceAI ACGGC 2 cut(s) 223, 946
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 3 cut(s) 437, 767, 961
BfoI RGCGCY 2 cut(s) 213, 898
BglII AGATCT 1 cut(s) 861
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 5 cut(s) 128, 129, 250, 260, 504
BmiI GGNNCC 6 cut(s) 6, 130, 505, 669, 883, 925
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 2 cut(s) 452, 709
BmsI GCATC 4 cut(s) 243, 753, 768, 814
BmuI ACTGGG 2 cut(s) 452, 709
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 645, 886
BsaAI YACGTR 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 253, 386, 702, 781
BsaWI WCCGGW 3 cut(s) 241, 648, 795
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 442
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 3 cut(s) 447, 715, 804
Bse3DI GCAATG 1 cut(s) 895
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 4 cut(s) 253, 386, 702, 781
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 272, 442
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 2 cut(s) 183, 574
BseNI ACTGG 3 cut(s) 447, 715, 804
BseSI GKGCMC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 9 cut(s) 63, 130, 225, 251, 287, 391, 408, 506, 707
BshNI GGYRCC 2 cut(s) 667, 923
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 4 cut(s) 242, 649, 796, 885
BsiWI CGTACG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 272, 442
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 9 cut(s) 63, 130, 225, 251, 287, 391, 408, 506, 707
BsoBI CYCGRG 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 132, 280
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 151, 520, 861
BspACI CCGC 4 cut(s) 126, 141, 263, 819
BspANI GGCC 9 cut(s) 63, 130, 225, 251, 287, 391, 408, 506, 707
BspCNI CTCAG 2 cut(s) 184, 573
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 6 cut(s) 6, 130, 505, 669, 883, 925
BspT107I GGYRCC 2 cut(s) 667, 923
BsrDI GCAATG 1 cut(s) 895
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 3 cut(s) 447, 715, 804
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 4 cut(s) 253, 386, 702, 781
BssMI GATC 3 cut(s) 151, 520, 861
BssT1I CCWWGG 2 cut(s) 253, 386
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 54, 373, 688
Bst6I CTCTTC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 128, 899
BstDEI CTNAG 3 cut(s) 175, 192, 560
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 2 cut(s) 213, 898
BstHHI GCGC 2 cut(s) 212, 897
BstKTI GATC 3 cut(s) 154, 523, 864
BstMBI GATC 3 cut(s) 151, 520, 861
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 6 cut(s) 216, 231, 284, 611, 750, 894
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 132
BstSNI TACGTA 1 cut(s) 635
BstUI CGCG 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 861
BstYI RGATCY 1 cut(s) 861
BsuRI GGCC 9 cut(s) 63, 130, 225, 251, 287, 391, 408, 506, 707
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 4 cut(s) 50, 325, 440, 633
Cac8I GCNNGC 2 cut(s) 128, 899
CfoI GCGC 2 cut(s) 212, 897
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 5 cut(s) 128, 129, 250, 260, 504
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 636, 646, 841
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviAII CATG 1 cut(s) 514
CviQI GTAC 3 cut(s) 636, 646, 841
DdeI CTNAG 3 cut(s) 175, 192, 560
DpnI GATC 3 cut(s) 153, 522, 863
DpnII GATC 3 cut(s) 151, 520, 861
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 252, 808
Eco105I TACGTA 1 cut(s) 635
Eco130I CCWWGG 2 cut(s) 253, 386
Eco147I AGGCCT 3 cut(s) 225, 287, 391
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 3 cut(s) 179, 381, 695
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 253, 386
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 253, 386
FaeI CATG 1 cut(s) 517
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 513
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 3 cut(s) 437, 767, 961
GlaI GCGC 2 cut(s) 211, 896
GluI GCNGC 1 cut(s) 141
HaeII RGCGCY 2 cut(s) 213, 898
HaeIII GGCC 9 cut(s) 63, 130, 225, 251, 287, 391, 408, 506, 707
HapII CCGG 4 cut(s) 242, 649, 796, 885
HhaI GCGC 2 cut(s) 212, 897
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 2 cut(s) 210, 895
HinP1I GCGC 2 cut(s) 210, 895
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 1 cut(s) 82
HpaII CCGG 4 cut(s) 242, 649, 796, 885
HphI GGTGA 3 cut(s) 62, 676, 691
Hpy166II GTNNAC 1 cut(s) 720
Hpy188I TCNGA 4 cut(s) 87, 282, 369, 908
Hpy188III TCNNGA 3 cut(s) 242, 302, 865
Hpy8I GTNNAC 1 cut(s) 720
HpyAV CCTTC 6 cut(s) 18, 36, 277, 471, 749, 913
HpyCH4III ACNGT 3 cut(s) 54, 373, 688
HpyCH4IV ACGT 2 cut(s) 634, 810
HpyCH4V TGCA 4 cut(s) 50, 626, 656, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 216, 231, 284, 611, 750, 894
HpyF3I CTNAG 3 cut(s) 175, 192, 560
HpySE526I ACGT 2 cut(s) 634, 810
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 2 cut(s) 210, 895
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 151, 520, 861
LmnI GCTCC 3 cut(s) 10, 551, 945
LweI GCATC 4 cut(s) 243, 753, 768, 814
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 3 cut(s) 437, 767, 961
MaeII ACGT 2 cut(s) 634, 810
MaeIII GTNAC 2 cut(s) 347, 806
MalI GATC 3 cut(s) 153, 522, 863
MboI GATC 3 cut(s) 151, 520, 861
MboII GAAGA 5 cut(s) 25, 35, 335, 564, 567
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 2 cut(s) 132, 280
MlyI GAGTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 241
MseI TTAA 4 cut(s) 96, 135, 468, 489
MspI CCGG 4 cut(s) 242, 649, 796, 885
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 6 cut(s) 216, 231, 284, 611, 750, 894
NdeII GATC 3 cut(s) 151, 520, 861
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 6 cut(s) 6, 130, 505, 669, 883, 925
NmeAIII GCCGAG 2 cut(s) 39, 384
PceI AGGCCT 3 cut(s) 225, 287, 391
PctI GAATGC 1 cut(s) 658
Pfl23II CGTACG 1 cut(s) 840
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 635
PshBI ATTAAT 2 cut(s) 96, 135
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 840
PspN4I GGNNCC 6 cut(s) 6, 130, 505, 669, 883, 925
PspOMI GGGCCC 1 cut(s) 128
PspPI GGNCC 5 cut(s) 128, 129, 250, 260, 504
PsuI RGATCY 1 cut(s) 861
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 3 cut(s) 637, 647, 842
RsaNI GTAC 3 cut(s) 636, 646, 841
SaqAI TTAA 4 cut(s) 96, 135, 468, 489
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 151, 520, 861
Sau96I GGNCC 5 cut(s) 128, 129, 250, 260, 504
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 132, 280
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 4 cut(s) 243, 753, 768, 814
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 660, 865
SmoI CTYRAG 2 cut(s) 660, 865
SnaBI TACGTA 1 cut(s) 635
SseBI AGGCCT 3 cut(s) 225, 287, 391
SsiI CCGC 4 cut(s) 126, 141, 263, 819
SspMI CTAG 3 cut(s) 437, 767, 961
StuI AGGCCT 3 cut(s) 225, 287, 391
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 253, 386
TaaI ACNGT 3 cut(s) 54, 373, 688
TaiI ACGT 2 cut(s) 637, 813
TaqI TCGA 2 cut(s) 150, 228
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 4 cut(s) 96, 135, 468, 489
Tru9I TTAA 4 cut(s) 96, 135, 468, 489
TscAI CASTG 4 cut(s) 57, 325, 447, 633
TspDTI ATGAA 2 cut(s) 453, 567
TspGWI ACGGA 1 cut(s) 906
TspRI CASTG 4 cut(s) 57, 325, 447, 633
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 2 cut(s) 96, 135
XapI RAATTY 4 cut(s) 179, 381, 568, 695
XspI CTAG 3 cut(s) 437, 767, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.