Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005290.1

Orthogroup ID

OG0015549

Physical Location & Seq

Genomic Coordinates Forward (+)

24861 .. 26740

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005290.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggctccttcaatttctaatttctcttctgtcttccttgttcttcttgcactgtatctcggcctcattcaccaggttatgagtcagattgctattaatatcactgttagtccccctaactactgcgcgcccattaatgccaccgatgtcgatcgcgttcagtttgccttgaacttagaattctgtcaagctgagtattttctatacggcgctcttggcaaaggcctcgacagcatcagtccggatttggcccaaggtggtccgcctcccattggtgctcagaaggccttgcttctcaatcctgatgtcgctcgtatcagtgaggagattgcttatcaacaagttggtaacatcaggtctattgttcagactgtgggaggaattccaaggcctctactaaatctcggcctcataaattggggattattctttgacctagcactggggaaaccccttatcccttcatttaatccatacgcaaactccctcaattttctgttaggggcctatgccatgcctgatctcgcacaactatcctatgttagcgccattccaagcctcaccacaaattcttcttcattatctttggcttcaaagcttttgccaatcaaggctggacagagtgcagtgatacgtacattgttgtacccgaatgcaactcaagtggtgcctccatataatatcacggtgggtgaattcaccaaggccatttcccagctcactaacatccttggcaagtgtggcatcaaaagcgaaggcatcttactagctgacacaaccctcggggcagagaaccggacgaccagtaacgttttgtccgccgatgccaattcactatcgtacgcaagaacagagcctgagatcttgaggattgtgtatggaaccggcaatgagcgcctgcccggcggattttttcccaaaggtgccaacggcaaaattgcaaggagttttctgctgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

320

Amino Acids

34.07

Weight (kDa)

7.63

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25290 FvH4_2g25301 FvH4_2g25303
rosa_chinensis	RchiOBHm_Chr6g0258881
rosa_laevigata	RLG00000014577 RLG00000014581
rosa_multiflora	Rmu_sc0004485.1_g000020 Rmu_sc0005290.1_g000003
rosa_roxburghii	Rroxscaffold_7G00206130
rosa_rugosa	Rorug05G0584100
rosa_samantha	Rh6AG100500 Rh6BG091800 Rh6CG089500 Rh6DG083800
rosa_wichuraiana	Rw0G005340 Rw6G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	667, 923
AccII	CGCG	2 cut(s)	128, 156
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	3 cut(s)	263, 819, 906
AclI	AACGTT	1 cut(s)	810
AcsI	RAATTY	4 cut(s)	179, 381, 568, 695
AfaI	GTAC	3 cut(s)	637, 647, 842
AfiI	CCNNNNNNNGG	2 cut(s)	272, 442
AgsI	TTSAA	3 cut(s)	12, 172, 594
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	191, 598, 718, 770
AluI	AGCT	4 cut(s)	191, 598, 718, 770
Alw21I	GWGCWC	1 cut(s)	280
AlwNI	CAGNNNCTG	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	8 cut(s)	61, 223, 249, 285, 389, 406, 504, 705
ApoI	RAATTY	4 cut(s)	179, 381, 568, 695
AseI	ATTAAT	2 cut(s)	96, 135
AspLEI	GCGC	5 cut(s)	128, 130, 212, 548, 897
AspS9I	GGNCC	3 cut(s)	250, 260, 504
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	4 cut(s)	62, 553, 691, 704
AvaI	CYCGRG	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	667, 923
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	223, 946
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	903
BfaI	CTAG	3 cut(s)	437, 767, 961
BfoI	RGCGCY	3 cut(s)	213, 549, 898
BglI	GCCNNNNNGGC	1 cut(s)	903
BglII	AGATCT	1 cut(s)	861
Bme1390I	CCNGG	2 cut(s)	74, 903
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	250, 260, 504
BmiI	GGNNCC	5 cut(s)	6, 505, 669, 883, 925
BmrFI	CCNGG	2 cut(s)	74, 903
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	4 cut(s)	243, 753, 768, 814
BmuI	ACTGGG	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	645, 886
BpuMI	CCSGG	1 cut(s)	903
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	5 cut(s)	253, 386, 702, 730, 781
BsaWI	WCCGGW	2 cut(s)	241, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 442
Bse118I	RCCGGY	1 cut(s)	884
Bse1I	ACTGG	2 cut(s)	447, 804
Bse3DI	GCAATG	1 cut(s)	895
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	5 cut(s)	253, 386, 702, 730, 781
BseGI	GGATG	1 cut(s)	726
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	272, 442
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	3 cut(s)	183, 293, 849
BseNI	ACTGG	2 cut(s)	447, 804
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	338
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	2 cut(s)	128, 156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 408, 506, 707
BshNI	GGYRCC	2 cut(s)	667, 923
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	782
BsiSI	CCGG	4 cut(s)	242, 796, 885, 903
BsiWI	CGTACG	1 cut(s)	840
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	272, 442
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 408, 506, 707
BsoBI	CYCGRG	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	151, 520, 861, 957
BspACI	CCGC	3 cut(s)	263, 819, 906
BspANI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 408, 506, 707
BspCNI	CTCAG	3 cut(s)	184, 292, 850
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	128, 156
BspLI	GGNNCC	5 cut(s)	6, 505, 669, 883, 925
BspT107I	GGYRCC	2 cut(s)	667, 923
BsrDI	GCAATG	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	884
BsrI	ACTGG	2 cut(s)	447, 804
BssAI	RCCGGY	1 cut(s)	884
BssECI	CCNNGG	5 cut(s)	253, 386, 702, 730, 781
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	4 cut(s)	151, 520, 861, 957
BssT1I	CCWWGG	4 cut(s)	253, 386, 702, 730
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	4 cut(s)	54, 106, 373, 688
Bst6I	CTCTTC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	128, 899
BstDEI	CTNAG	4 cut(s)	175, 192, 279, 858
BstF5I	GGATG	1 cut(s)	726
BstFNI	CGCG	2 cut(s)	128, 156
BstH2I	RGCGCY	3 cut(s)	213, 549, 898
BstHHI	GCGC	5 cut(s)	128, 130, 212, 548, 897
BstKTI	GATC	4 cut(s)	154, 523, 864, 960
BstMBI	GATC	4 cut(s)	151, 520, 861, 957
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 231, 284, 741, 750, 894, 903
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	72, 901
BstSNI	TACGTA	1 cut(s)	635
BstUI	CGCG	2 cut(s)	128, 156
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuRI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 408, 506, 707
BtsCI	GGATG	1 cut(s)	726
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	5 cut(s)	50, 102, 325, 440, 633
Cac8I	GCNNGC	2 cut(s)	128, 899
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	5 cut(s)	128, 130, 212, 548, 897
Cfr10I	RCCGGY	1 cut(s)	884
Cfr13I	GGNCC	3 cut(s)	250, 260, 504
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	636, 646, 841
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	3 cut(s)	636, 646, 841
DdeI	CTNAG	4 cut(s)	175, 192, 279, 858
DpnI	GATC	4 cut(s)	153, 522, 863, 959
DpnII	GATC	4 cut(s)	151, 520, 861, 957
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	3 cut(s)	252, 808, 921
Eco105I	TACGTA	1 cut(s)	635
Eco130I	CCWWGG	4 cut(s)	253, 386, 702, 730
Eco147I	AGGCCT	3 cut(s)	225, 287, 391
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRI	GAATTC	3 cut(s)	179, 381, 695
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	4 cut(s)	253, 386, 702, 730
ErhI	CCWWGG	4 cut(s)	253, 386, 702, 730
FaeI	CATG	1 cut(s)	517
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	513
FokI	GGATG	1 cut(s)	713
FspBI	CTAG	3 cut(s)	437, 767, 961
GlaI	GCGC	5 cut(s)	127, 129, 211, 547, 896
GsaI	CCCAGC	1 cut(s)	718
HaeII	RGCGCY	3 cut(s)	213, 549, 898
HaeIII	GGCC	8 cut(s)	63, 225, 251, 287, 391, 408, 506, 707
HapII	CCGG	4 cut(s)	242, 796, 885, 903
HhaI	GCGC	5 cut(s)	128, 130, 212, 548, 897
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	5 cut(s)	126, 128, 210, 546, 895
HinP1I	GCGC	5 cut(s)	126, 128, 210, 546, 895
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	4 cut(s)	242, 796, 885, 903
HphI	GGTGA	4 cut(s)	62, 553, 691, 704
Hpy188I	TCNGA	3 cut(s)	87, 282, 369
Hpy188III	TCNNGA	3 cut(s)	242, 302, 865
HpyAV	CCTTC	4 cut(s)	18, 277, 471, 749
HpyCH4III	ACNGT	4 cut(s)	54, 106, 373, 688
HpyCH4IV	ACGT	2 cut(s)	634, 810
HpyCH4V	TGCA	4 cut(s)	50, 626, 656, 941
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 231, 284, 741, 750, 894, 903
HpyF3I	CTNAG	4 cut(s)	175, 192, 279, 858
HpySE526I	ACGT	2 cut(s)	634, 810
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	5 cut(s)	126, 128, 210, 546, 895
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	151, 520, 861, 957
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	4 cut(s)	243, 753, 768, 814
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	3 cut(s)	437, 767, 961
MaeII	ACGT	2 cut(s)	634, 810
MaeIII	GTNAC	2 cut(s)	347, 806
MalI	GATC	4 cut(s)	153, 522, 863, 959
MboI	GATC	4 cut(s)	151, 520, 861, 957
MboII	GAAGA	5 cut(s)	18, 25, 35, 564, 567
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	3 cut(s)	96, 135, 468
MspI	CCGG	4 cut(s)	242, 796, 885, 903
MspR9I	CCNGG	2 cut(s)	74, 903
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	128, 156
MwoI	GCNNNNNNNGC	7 cut(s)	216, 231, 284, 741, 750, 894, 903
NciI	CCSGG	1 cut(s)	903
NdeII	GATC	4 cut(s)	151, 520, 861, 957
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	5 cut(s)	6, 505, 669, 883, 925
NmeAIII	GCCGAG	2 cut(s)	39, 384
PauI	GCGCGC	1 cut(s)	126
PceI	AGGCCT	3 cut(s)	225, 287, 391
PctI	GAATGC	1 cut(s)	658
Pfl23II	CGTACG	1 cut(s)	840
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	635
PshBI	ATTAAT	2 cut(s)	96, 135
Psp1406I	AACGTT	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	72
PspLI	CGTACG	1 cut(s)	840
PspN4I	GGNNCC	5 cut(s)	6, 505, 669, 883, 925
PspPI	GGNCC	3 cut(s)	250, 260, 504
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	861
PteI	GCGCGC	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	3 cut(s)	637, 647, 842
RsaNI	GTAC	3 cut(s)	636, 646, 841
SaqAI	TTAA	3 cut(s)	96, 135, 468
Sau3AI	GATC	4 cut(s)	151, 520, 861, 957
Sau96I	GGNCC	3 cut(s)	250, 260, 504
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	74, 903
SduI	GDGCHC	1 cut(s)	280
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	243, 753, 768, 814
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	660, 865
SmoI	CTYRAG	2 cut(s)	660, 865
SnaBI	TACGTA	1 cut(s)	635
SseBI	AGGCCT	3 cut(s)	225, 287, 391
SsiI	CCGC	3 cut(s)	263, 819, 906
SspMI	CTAG	3 cut(s)	437, 767, 961
StuI	AGGCCT	3 cut(s)	225, 287, 391
StyD4I	CCNGG	2 cut(s)	72, 901
StyI	CCWWGG	4 cut(s)	253, 386, 702, 730
TaaI	ACNGT	4 cut(s)	54, 106, 373, 688
TaiI	ACGT	2 cut(s)	637, 813
TaqI	TCGA	2 cut(s)	150, 228
Tru1I	TTAA	3 cut(s)	96, 135, 468
Tru9I	TTAA	3 cut(s)	96, 135, 468
TscAI	CASTG	5 cut(s)	57, 109, 325, 447, 633
TspDTI	ATGAA	2 cut(s)	453, 567
TspRI	CASTG	5 cut(s)	57, 109, 325, 447, 633
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	2 cut(s)	96, 135
XapI	RAATTY	4 cut(s)	179, 381, 568, 695
XspI	CTAG	3 cut(s)	437, 767, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.