Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015549

Physical Location & Seq

Genomic Coordinates Reverse (-)

78121022 .. 78121674

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0584100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAAAGCTAAATGTGTCCGCCGCGTCAGACCTGCAGCTCAGCAAACGACGTCGTATTGGTGTTGAAGAAGAAGAAGAAGAATTAGACCCTTTATATATAAACCCTCATCTTCACTGTTTAGGATTATCAGAAACAATGAAAGCTTCGGAGTCCGGGGTTTCAACGGCGCCCAGCAACAAAGAGAAGAAGCCCATCAAGCCTCAATTCGTTCCGGCCAAAGATGACAGCAAACCTGTGCTTCAAGACCCAATTTTGAGGTCGGACCCGATTGAGACAGAGGAAGCTGTGCTGAGATTGCCTCCGTTTTCTCTGTGCCCAGATCATCAAGGAAGGGTTAACACCAAAATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

118

Amino Acids

13.07

Weight (kDa)

5.62

Isoelectric Point (pI)

84.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25290 FvH4_2g25301 FvH4_2g25303
rosa_chinensis	RchiOBHm_Chr6g0258881
rosa_laevigata	RLG00000014577 RLG00000014581
rosa_multiflora	Rmu_sc0004485.1_g000020 Rmu_sc0005290.1_g000003
rosa_roxburghii	Rroxscaffold_7G00206130
rosa_rugosa	Rorug05G0584100
rosa_samantha	Rh6AG100500 Rh6BG091800 Rh6CG089500 Rh6DG083800
rosa_wichuraiana	Rw0G005340 Rw6G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	21, 24
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	2 cut(s)	52, 170
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	3 cut(s)	68, 165, 245
AluBI	AGCT	4 cut(s)	10, 40, 146, 287
AluI	AGCT	4 cut(s)	10, 40, 146, 287
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	24, 38
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	2 cut(s)	25, 39
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	171, 267
BmrFI	CCNGG	1 cut(s)	157
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
Bpu1102I	GCTNAGC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	52, 170
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	55, 284
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	156, 215
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	41
BspACI	CCGC	2 cut(s)	21, 24
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	2 cut(s)	54, 285
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	171, 267
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	322
BssNI	GRCGYC	2 cut(s)	52, 170
Bst4CI	ACNGT	1 cut(s)	119
BstACI	GRCGYC	2 cut(s)	52, 170
BstDEI	CTNAG	2 cut(s)	41, 293
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 298
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	15
CviJI	RGCY	7 cut(s)	10, 40, 146, 193, 202, 218, 287
CviKI_1	RGCY	7 cut(s)	10, 40, 146, 193, 202, 218, 287
DdeI	CTNAG	2 cut(s)	41, 293
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	265
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
FaiI	YATR	3 cut(s)	97, 99, 101
Fnu4HI	GCNGC	2 cut(s)	24, 38
Fsp4HI	GCNGC	2 cut(s)	24, 38
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	2 cut(s)	24, 38
GsaI	CCCAGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	156, 215
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	2 cut(s)	52, 170
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	1 cut(s)	152
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	156, 215
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	31, 133, 151, 265
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	54, 57
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 298
HpyF3I	CTNAG	2 cut(s)	41, 293
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	2 cut(s)	52, 170
HspAI	GCGC	1 cut(s)	170
KasI	GGCGCC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	47, 169, 187, 228, 249, 333
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	52
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	7 cut(s)	80, 83, 86, 89, 92, 104, 199
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	83, 206, 252
Mly113I	GGCGCC	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	117, 213, 252, 274, 312
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	2 cut(s)	156, 215
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	199, 298
NarI	GGCGCC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	171, 267
PkrI	GCNGC	2 cut(s)	25, 39
PleI	GAGTC	1 cut(s)	160
PluTI	GGCGCC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	171, 267
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	24, 38
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	8 cut(s)	12, 36, 42, 55, 148, 238, 263, 289
SfcI	CTRYAG	1 cut(s)	35
SfoI	GGCGCC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	83, 206, 252
SsiI	CCGC	2 cut(s)	21, 24
SspDI	GGCGCC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	55
TasI	AATT	3 cut(s)	83, 206, 252
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	265
ZraI	GACGTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.