Rroxscaffold_7G00206130

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015549
Physical Location & Seq
Reverse (-)
55789802 .. 55791829
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206130.1

Sequence Viewer

Length: 879 bp
ATGGCTCCTTCAATTTCTAATTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCAGATTGCTATTAATATCACTATTAGTCCCCCTAACTACTGCGCGCCCATTAATGCCGCCGATGTCGATCGCGTTCAGTTTGCCTTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGGTTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCGGAAGGCCTTGCTTCTCGACCCTGATGTCGCTCGCATCAGTGAGGAGATTGCTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGAATTCCAAGGCCTCTACTAAATCTCGGCCTCATAAATTGGGGATTATTCTTTGGCCTAGCGCTGGGGAAACCCCTTATCCCTCCATTTAATCCATACGCAAACTCCCTCAGTTTTCTGTTAGGGGCCTATGCCATGCCTGATCTCGCACAACTATCCTATGTTAGCTCCATTCCAAGCCTCACCACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGCCAATCAAGGCCGGACAGAGTGCAGTGATACGTACATTGTTGTACCGGAATGCAACTCAAGTGGTGCCTCCATATGATATCACGAACCGGACGACCAGTAACGTTTTGTCCGCCGATGCCAATTCACTATCGTACGCAAGAACAGAGCCTGAGATCTTGAGGATTGTGTATGGAACCGGCAATGAGCGCCTGCCCTTCGGATTTTTTTCCCAAAGGTGCCAACGGCAAAATTGCAAGGAGCTTTCTGCTGATCTAGATAGCATCTCTGCTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

292

Amino Acids

31.41

Weight (kDa)

7.61

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 49 - 216 1.5e-22 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 667, 819
AccII CGCG 2 cut(s) 128, 156
AciI CCGC 3 cut(s) 141, 263, 714
AclI AACGTT 1 cut(s) 705
AcsI RAATTY 3 cut(s) 179, 381, 568
AfaI GTAC 3 cut(s) 637, 647, 737
AfeI AGCGCT 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 272, 442
AgsI TTSAA 3 cut(s) 12, 172, 594
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 191, 546, 598, 844
AluI AGCT 4 cut(s) 191, 546, 598, 844
Alw21I GWGCWC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 752
Aor51HI AGCGCT 1 cut(s) 441
AoxI GGCC 9 cut(s) 61, 223, 249, 285, 389, 406, 433, 504, 612
ApoI RAATTY 3 cut(s) 179, 381, 568
AseI ATTAAT 2 cut(s) 96, 135
AspLEI GCGC 5 cut(s) 128, 130, 212, 442, 792
AspS9I GGNCC 3 cut(s) 250, 260, 504
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 62, 553
AvaII GGWCC 1 cut(s) 260
BanI GGYRCC 2 cut(s) 667, 819
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 223, 842
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 243
BfaI CTAG 2 cut(s) 437, 857
BfoI RGCGCY 3 cut(s) 213, 443, 793
BglII AGATCT 1 cut(s) 756
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 74, 243
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 3 cut(s) 250, 260, 504
BmiI GGNNCC 5 cut(s) 6, 505, 669, 778, 821
BmrFI CCNGG 2 cut(s) 74, 243
BmsI GCATC 4 cut(s) 243, 324, 709, 873
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 645, 781
BpuMI CCSGG 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 253, 386
BsaWI WCCGGW 2 cut(s) 648, 690
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 442
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 790
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 253, 386
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 272, 442
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 3 cut(s) 183, 502, 744
BseNI ACTGG 1 cut(s) 699
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 338
BseYI CCCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 2 cut(s) 128, 156
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 9 cut(s) 63, 225, 251, 287, 391, 408, 435, 506, 614
BshNI GGYRCC 2 cut(s) 667, 819
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 5 cut(s) 242, 615, 649, 691, 780
BsiWI CGTACG 1 cut(s) 735
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 272, 442
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 9 cut(s) 63, 225, 251, 287, 391, 408, 435, 506, 614
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 151, 520, 756, 853
BspACI CCGC 3 cut(s) 141, 263, 714
BspANI GGCC 9 cut(s) 63, 225, 251, 287, 391, 408, 435, 506, 614
BspCNI CTCAG 3 cut(s) 184, 501, 745
BspFNI CGCG 2 cut(s) 128, 156
BspLI GGNNCC 5 cut(s) 6, 505, 669, 778, 821
BspT107I GGYRCC 2 cut(s) 667, 819
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 2 cut(s) 253, 386
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 4 cut(s) 151, 520, 756, 853
BssT1I CCWWGG 2 cut(s) 253, 386
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 54, 373
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 128, 313, 794
BstDEI CTNAG 4 cut(s) 175, 192, 488, 753
BstFNI CGCG 2 cut(s) 128, 156
BstH2I RGCGCY 3 cut(s) 213, 443, 793
BstHHI GCGC 5 cut(s) 128, 130, 212, 442, 792
BstKTI GATC 4 cut(s) 154, 523, 759, 856
BstMBI GATC 4 cut(s) 151, 520, 756, 853
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 4 cut(s) 216, 231, 284, 789
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 241
BstSNI TACGTA 1 cut(s) 635
BstUI CGCG 2 cut(s) 128, 156
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuRI GGCC 9 cut(s) 63, 225, 251, 287, 391, 408, 435, 506, 614
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 50, 325, 633
Cac8I GCNNGC 3 cut(s) 128, 313, 794
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 5 cut(s) 128, 130, 212, 442, 792
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 3 cut(s) 250, 260, 504
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 636, 646, 736
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviAII CATG 1 cut(s) 514
CviQI GTAC 3 cut(s) 636, 646, 736
DdeI CTNAG 4 cut(s) 175, 192, 488, 753
DpnI GATC 4 cut(s) 153, 522, 758, 855
DpnII GATC 4 cut(s) 151, 520, 756, 853
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 2 cut(s) 252, 703
Eco105I TACGTA 1 cut(s) 635
Eco130I CCWWGG 2 cut(s) 253, 386
Eco147I AGGCCT 3 cut(s) 225, 287, 391
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 260
Eco47III AGCGCT 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 2 cut(s) 179, 381
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 253, 386
ErhI CCWWGG 2 cut(s) 253, 386
FaeI CATG 1 cut(s) 517
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 513
FauNDI CATATG 1 cut(s) 676
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 437, 857
GlaI GCGC 5 cut(s) 127, 129, 211, 441, 791
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 446
HaeII RGCGCY 3 cut(s) 213, 443, 793
HaeIII GGCC 9 cut(s) 63, 225, 251, 287, 391, 408, 435, 506, 614
HapII CCGG 5 cut(s) 242, 615, 649, 691, 780
HhaI GCGC 5 cut(s) 128, 130, 212, 442, 792
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 5 cut(s) 126, 128, 210, 440, 790
HinP1I GCGC 5 cut(s) 126, 128, 210, 440, 790
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 1 cut(s) 82
HpaII CCGG 5 cut(s) 242, 615, 649, 691, 780
HphI GGTGA 2 cut(s) 62, 553
Hpy188I TCNGA 4 cut(s) 87, 282, 369, 803
Hpy188III TCNNGA 4 cut(s) 296, 685, 760, 857
HpyAV CCTTC 3 cut(s) 18, 277, 808
HpyCH4III ACNGT 2 cut(s) 54, 373
HpyCH4IV ACGT 2 cut(s) 634, 705
HpyCH4V TGCA 4 cut(s) 50, 626, 656, 837
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 231, 284, 789
HpyF3I CTNAG 4 cut(s) 175, 192, 488, 753
HpySE526I ACGT 2 cut(s) 634, 705
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 5 cut(s) 126, 128, 210, 440, 790
Kzo9I GATC 4 cut(s) 151, 520, 756, 853
LmnI GCTCC 3 cut(s) 10, 551, 841
LweI GCATC 4 cut(s) 243, 324, 709, 873
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 2 cut(s) 437, 857
MaeII ACGT 2 cut(s) 634, 705
MaeIII GTNAC 2 cut(s) 347, 701
MalI GATC 4 cut(s) 153, 522, 758, 855
MboI GATC 4 cut(s) 151, 520, 756, 853
MboII GAAGA 5 cut(s) 18, 25, 35, 564, 567
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 8 cut(s) 12, 19, 179, 381, 415, 568, 724, 832
MlyI GAGTC 1 cut(s) 91
MseI TTAA 3 cut(s) 96, 135, 468
MspI CCGG 5 cut(s) 242, 615, 649, 691, 780
MspR9I CCNGG 2 cut(s) 74, 243
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 128, 156
MwoI GCNNNNNNNGC 4 cut(s) 216, 231, 284, 789
NciI CCSGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 676
NdeII GATC 4 cut(s) 151, 520, 756, 853
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 5 cut(s) 6, 505, 669, 778, 821
NmeAIII GCCGAG 2 cut(s) 39, 384
PauI GCGCGC 1 cut(s) 126
PceI AGGCCT 3 cut(s) 225, 287, 391
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PctI GAATGC 1 cut(s) 658
Pfl23II CGTACG 1 cut(s) 735
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 635
PshBI ATTAAT 2 cut(s) 96, 135
Psp1406I AACGTT 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 735
PspN4I GGNNCC 5 cut(s) 6, 505, 669, 778, 821
PspPI GGNCC 3 cut(s) 250, 260, 504
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 756
PteI GCGCGC 1 cut(s) 126
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 3 cut(s) 637, 647, 737
RsaNI GTAC 3 cut(s) 636, 646, 736
SaqAI TTAA 3 cut(s) 96, 135, 468
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 4 cut(s) 151, 520, 756, 853
Sau96I GGNCC 3 cut(s) 250, 260, 504
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 74, 243
SduI GDGCHC 1 cut(s) 280
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 4 cut(s) 243, 324, 709, 873
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 660, 760
SmoI CTYRAG 2 cut(s) 660, 760
SnaBI TACGTA 1 cut(s) 635
Sse9I AATT 8 cut(s) 12, 19, 179, 381, 415, 568, 724, 832
SseBI AGGCCT 3 cut(s) 225, 287, 391
SsiI CCGC 3 cut(s) 141, 263, 714
SspMI CTAG 2 cut(s) 437, 857
StuI AGGCCT 3 cut(s) 225, 287, 391
StyD4I CCNGG 2 cut(s) 72, 241
StyI CCWWGG 2 cut(s) 253, 386
TaaI ACNGT 2 cut(s) 54, 373
TaiI ACGT 2 cut(s) 637, 708
TaqI TCGA 3 cut(s) 150, 228, 297
TasI AATT 8 cut(s) 12, 19, 179, 381, 415, 568, 724, 832
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 96, 135, 468
Tru9I TTAA 3 cut(s) 96, 135, 468
TscAI CASTG 3 cut(s) 57, 325, 633
TspDTI ATGAA 1 cut(s) 567
TspRI CASTG 3 cut(s) 57, 325, 633
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 2 cut(s) 96, 135
XapI RAATTY 3 cut(s) 179, 381, 568
XbaI TCTAGA 1 cut(s) 856
XspI CTAG 2 cut(s) 437, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.