Rw6G008700

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015549
Physical Location & Seq
Reverse (-)
14714583 .. 14716423
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008700.1

Sequence Viewer

Length: 963 bp
ATGGCTCCTTCAATTTCTAATTTCTCTTCTGTCTTCCTCGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCAGATTGCTATTAATATCACTGTTAGTCCCCCAAACTACTGCGCGCCCATTAATGCCACCGATGTCGATCGCGTTCAGTTTGCATTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGATTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCGGAAGGCCTTGCTTCTCAATCCTGATGTCGCTCGTATCAGTGAAGAGATTGCTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGAATTCCAAGGCCTCTACTAAATCTCGGCCTCATAAATTGGGGATTATTCTTTGACCTAGCACTGGGGAAACCCCTTATCCCTTCATTTAATCCATACGCAAACTCCCTCAATTTTCTGTTAGGGGCCTATGCCATGCCTGATCTCGCACAACTATCCTATGTTAGCGCCATTCCAAGCCTCACCACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGCCAATCAAGGCTGGACAGAGTGCAGTGATACGTACATTGTTGTACCCGAATGCAACTCAAGTGGTGCCTCCATATAATATCACGGTGGGTGAATTCACCAAGGCCATTTCCCAGCTCACTAACATCCTTGGCAAGTGTGGCATCAAAAGCGAAGGCATCTTACTAGCTGACACAACCCTCGGGGCAGAGAACCGGACGACCAGTAACGTTTTGTCCGCCGATGCCAATTCACTATCGTACGCAAGAACAGAGCCTGAGATCTTGAGGATTGTGTATGGAACCGGCAATGAGCGCCTGCCCGGCGGATTTTTTCCCAAAGGTGCCAACGGCAAAATTGCAAGGAGTTTTCTGCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

320

Amino Acids

34.1

Weight (kDa)

8.36

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 48 - 216 1e-22 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 667, 923
AccII CGCG 2 cut(s) 128, 156
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 3 cut(s) 263, 819, 906
AclI AACGTT 1 cut(s) 810
AcsI RAATTY 4 cut(s) 179, 381, 568, 695
AfaI GTAC 3 cut(s) 637, 647, 842
AfiI CCNNNNNNNGG 2 cut(s) 272, 442
AgsI TTSAA 3 cut(s) 12, 172, 594
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 4 cut(s) 191, 598, 718, 770
AluI AGCT 4 cut(s) 191, 598, 718, 770
Alw21I GWGCWC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 8 cut(s) 61, 223, 249, 285, 389, 406, 504, 705
ApoI RAATTY 4 cut(s) 179, 381, 568, 695
AseI ATTAAT 2 cut(s) 96, 135
AspLEI GCGC 5 cut(s) 128, 130, 212, 548, 897
AspS9I GGNCC 3 cut(s) 250, 260, 504
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 4 cut(s) 62, 553, 691, 704
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 260
BanI GGYRCC 2 cut(s) 667, 923
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 223, 946
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 903
BfaI CTAG 3 cut(s) 437, 767, 961
BfoI RGCGCY 3 cut(s) 213, 549, 898
BglI GCCNNNNNGGC 1 cut(s) 903
BglII AGATCT 1 cut(s) 861
Bme1390I CCNGG 2 cut(s) 74, 903
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 3 cut(s) 250, 260, 504
BmiI GGNNCC 5 cut(s) 6, 505, 669, 883, 925
BmrFI CCNGG 2 cut(s) 74, 903
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 4 cut(s) 243, 753, 768, 814
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 645, 886
BpuMI CCSGG 1 cut(s) 903
BsaAI YACGTR 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 5 cut(s) 253, 386, 702, 730, 781
BsaWI WCCGGW 2 cut(s) 241, 795
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 442
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 2 cut(s) 447, 804
Bse3DI GCAATG 1 cut(s) 895
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 5 cut(s) 253, 386, 702, 730, 781
BseGI GGATG 1 cut(s) 726
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 272, 442
BseMI GCAATG 1 cut(s) 895
BseMII CTCAG 2 cut(s) 183, 849
BseNI ACTGG 2 cut(s) 447, 804
BsePI GCGCGC 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 714
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 2 cut(s) 128, 156
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 8 cut(s) 63, 225, 251, 287, 391, 408, 506, 707
BshNI GGYRCC 2 cut(s) 667, 923
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 4 cut(s) 242, 796, 885, 903
BsiWI CGTACG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 272, 442
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 8 cut(s) 63, 225, 251, 287, 391, 408, 506, 707
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 4 cut(s) 151, 520, 861, 957
BspACI CCGC 3 cut(s) 263, 819, 906
BspANI GGCC 8 cut(s) 63, 225, 251, 287, 391, 408, 506, 707
BspCNI CTCAG 2 cut(s) 184, 850
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 128, 156
BspLI GGNNCC 5 cut(s) 6, 505, 669, 883, 925
BspT107I GGYRCC 2 cut(s) 667, 923
BsrDI GCAATG 1 cut(s) 895
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 2 cut(s) 447, 804
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 5 cut(s) 253, 386, 702, 730, 781
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 4 cut(s) 151, 520, 861, 957
BssT1I CCWWGG 4 cut(s) 253, 386, 702, 730
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 54, 106, 373, 688
Bst6I CTCTTC 2 cut(s) 31, 318
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 128, 899
BstDEI CTNAG 3 cut(s) 175, 192, 858
BstF5I GGATG 1 cut(s) 726
BstFNI CGCG 2 cut(s) 128, 156
BstH2I RGCGCY 3 cut(s) 213, 549, 898
BstHHI GCGC 5 cut(s) 128, 130, 212, 548, 897
BstKTI GATC 4 cut(s) 154, 523, 864, 960
BstMBI GATC 4 cut(s) 151, 520, 861, 957
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 7 cut(s) 216, 231, 284, 741, 750, 894, 903
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 901
BstSNI TACGTA 1 cut(s) 635
BstUI CGCG 2 cut(s) 128, 156
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 861
BstYI RGATCY 1 cut(s) 861
BsuRI GGCC 8 cut(s) 63, 225, 251, 287, 391, 408, 506, 707
BtsCI GGATG 1 cut(s) 726
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 5 cut(s) 50, 102, 325, 440, 633
Cac8I GCNNGC 2 cut(s) 128, 899
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 5 cut(s) 128, 130, 212, 548, 897
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 3 cut(s) 250, 260, 504
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 3 cut(s) 636, 646, 841
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviAII CATG 1 cut(s) 514
CviQI GTAC 3 cut(s) 636, 646, 841
DdeI CTNAG 3 cut(s) 175, 192, 858
DpnI GATC 4 cut(s) 153, 522, 863, 959
DpnII GATC 4 cut(s) 151, 520, 861, 957
Eam1104I CTCTTC 2 cut(s) 31, 318
EarI CTCTTC 2 cut(s) 31, 318
EciI GGCGGA 3 cut(s) 252, 808, 921
Eco105I TACGTA 1 cut(s) 635
Eco130I CCWWGG 4 cut(s) 253, 386, 702, 730
Eco147I AGGCCT 3 cut(s) 225, 287, 391
Eco47I GGWCC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 504
EcoRI GAATTC 3 cut(s) 179, 381, 695
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 4 cut(s) 253, 386, 702, 730
ErhI CCWWGG 4 cut(s) 253, 386, 702, 730
FaeI CATG 1 cut(s) 517
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 513
FokI GGATG 1 cut(s) 713
FspBI CTAG 3 cut(s) 437, 767, 961
GlaI GCGC 5 cut(s) 127, 129, 211, 547, 896
GsaI CCCAGC 1 cut(s) 718
HaeII RGCGCY 3 cut(s) 213, 549, 898
HaeIII GGCC 8 cut(s) 63, 225, 251, 287, 391, 408, 506, 707
HapII CCGG 4 cut(s) 242, 796, 885, 903
HhaI GCGC 5 cut(s) 128, 130, 212, 548, 897
Hin1II CATG 1 cut(s) 517
Hin6I GCGC 5 cut(s) 126, 128, 210, 546, 895
HinP1I GCGC 5 cut(s) 126, 128, 210, 546, 895
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 1 cut(s) 82
HpaII CCGG 4 cut(s) 242, 796, 885, 903
HphI GGTGA 4 cut(s) 62, 553, 691, 704
Hpy188I TCNGA 3 cut(s) 87, 282, 369
Hpy188III TCNNGA 3 cut(s) 242, 302, 865
HpyAV CCTTC 4 cut(s) 18, 277, 471, 749
HpyCH4III ACNGT 4 cut(s) 54, 106, 373, 688
HpyCH4IV ACGT 2 cut(s) 634, 810
HpyCH4V TGCA 5 cut(s) 50, 167, 626, 656, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 216, 231, 284, 741, 750, 894, 903
HpyF3I CTNAG 3 cut(s) 175, 192, 858
HpySE526I ACGT 2 cut(s) 634, 810
Hsp92II CATG 1 cut(s) 517
HspAI GCGC 5 cut(s) 126, 128, 210, 546, 895
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 151, 520, 861, 957
LmnI GCTCC 1 cut(s) 10
LweI GCATC 4 cut(s) 243, 753, 768, 814
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 3 cut(s) 437, 767, 961
MaeII ACGT 2 cut(s) 634, 810
MaeIII GTNAC 2 cut(s) 347, 806
MalI GATC 4 cut(s) 153, 522, 863, 959
MboI GATC 4 cut(s) 151, 520, 861, 957
MboII GAAGA 6 cut(s) 18, 25, 35, 335, 564, 567
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 241
MseI TTAA 3 cut(s) 96, 135, 468
MspI CCGG 4 cut(s) 242, 796, 885, 903
MspR9I CCNGG 2 cut(s) 74, 903
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 128, 156
MwoI GCNNNNNNNGC 7 cut(s) 216, 231, 284, 741, 750, 894, 903
NciI CCSGG 1 cut(s) 903
NdeII GATC 4 cut(s) 151, 520, 861, 957
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 5 cut(s) 6, 505, 669, 883, 925
NmeAIII GCCGAG 2 cut(s) 39, 384
PauI GCGCGC 1 cut(s) 126
PceI AGGCCT 3 cut(s) 225, 287, 391
PctI GAATGC 1 cut(s) 658
Pfl23II CGTACG 1 cut(s) 840
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 635
PshBI ATTAAT 2 cut(s) 96, 135
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 840
PspN4I GGNNCC 5 cut(s) 6, 505, 669, 883, 925
PspPI GGNCC 3 cut(s) 250, 260, 504
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 861
PteI GCGCGC 1 cut(s) 126
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 3 cut(s) 637, 647, 842
RsaNI GTAC 3 cut(s) 636, 646, 841
SaqAI TTAA 3 cut(s) 96, 135, 468
Sau3AI GATC 4 cut(s) 151, 520, 861, 957
Sau96I GGNCC 3 cut(s) 250, 260, 504
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 74, 903
SduI GDGCHC 1 cut(s) 280
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 4 cut(s) 243, 753, 768, 814
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 660, 865
SmoI CTYRAG 2 cut(s) 660, 865
SnaBI TACGTA 1 cut(s) 635
SseBI AGGCCT 3 cut(s) 225, 287, 391
SsiI CCGC 3 cut(s) 263, 819, 906
SspMI CTAG 3 cut(s) 437, 767, 961
StuI AGGCCT 3 cut(s) 225, 287, 391
StyD4I CCNGG 2 cut(s) 72, 901
StyI CCWWGG 4 cut(s) 253, 386, 702, 730
TaaI ACNGT 4 cut(s) 54, 106, 373, 688
TaiI ACGT 2 cut(s) 637, 813
TaqI TCGA 2 cut(s) 150, 228
Tru1I TTAA 3 cut(s) 96, 135, 468
Tru9I TTAA 3 cut(s) 96, 135, 468
TscAI CASTG 5 cut(s) 57, 109, 325, 447, 633
TspDTI ATGAA 2 cut(s) 453, 567
TspRI CASTG 5 cut(s) 57, 109, 325, 447, 633
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 2 cut(s) 96, 135
XapI RAATTY 4 cut(s) 179, 381, 568, 695
XspI CTAG 3 cut(s) 437, 767, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.