FvH4_2g25301

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015549
Physical Location & Seq
Forward (+)
20580431 .. 20581446
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25301.t1

Sequence Viewer

Length: 804 bp
ATGCAGTTTGCCATGAACTTAGAATATTTGGAAGCCGAGTTCTTTCTGTCCGGCGCTACTGGCCTCGGCCTCGACAGCTACGCTCCGGGTTTTTCCGGAGGTGGTCCGCCTCCCATCGGTGCTCAGAAGGCGAATCTCGACCCTCTTGTTCGTCGCATCATTGAGGAGATGGGTTATCAACAAATGGGTAACATCAGGACTATGGTTGAGACTGTGGGAGGAATTAGAAGGCCTCTAATTGATTTAACACGCGTAAATTGGGGAATAATCTTTAACCGAGCATTGAAGACAACCCTAATCCCTCCATTCAATCCATACGAAAACTCACTCAATTTTCTGTTAGCCGCCTATACCATGCCTTATCTCGCACAAGTCTCCTATGTCAACTCCATTCCGAGCCTCACCACAAATTCTCCTTCATTATTTTTGGCTGCAAAGCTTTTGGCGATCAAGGCTGGACAAAGTGCGGTGCTACGTGCGTTGTTGTATCCGAAAGCGACTCAACTGGTGCCTCCATATAATTTCACGGTGCGTGAGTTCACCAAGGCCATTTCCCAGCTCACTAACGACCTTGGCAAGTGCGGCATCAAAAGCGAAGGCATCTTGCTAGCTAACACAACCCTCGGGGCGGAGAACCGGACGACCAGTAACGTTCTGTCCGCCGATGCCAATTCGTTGTCCTACGCAAGAACAGAGCCTGAGATGTTGAGGATTGTGTACGGAACCGGCAATGAGCACCTTTCCGGAGGATTTTTCCCCTTGGGTGCAAACGGCAAAATTGCAAGGAGCCACCTCCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

268

Amino Acids

28.95

Weight (kDa)

9.14

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 1 - 163 8.3e-25 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccII CGCG 1 cut(s) 252
AccIII TCCGGA 2 cut(s) 95, 743
AciI CCGC 6 cut(s) 107, 345, 467, 582, 629, 660
AclI AACGTT 1 cut(s) 651
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 2 cut(s) 116, 628
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 286, 310
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 4 cut(s) 78, 439, 559, 611
AluI AGCT 4 cut(s) 78, 439, 559, 611
Alw21I GWGCWC 2 cut(s) 124, 738
Alw26I GTCTC 2 cut(s) 203, 379
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 623
Aor13HI TCCGGA 2 cut(s) 95, 743
AoxI GGCC 4 cut(s) 61, 67, 230, 546
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 409
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 394, 532
AsuNHI GCTAGC 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 124, 738
BbvI GCAGC 1 cut(s) 418
BccI CCATC 2 cut(s) 122, 163
BceAI ACGGC 1 cut(s) 787
BciVI GTATCC 1 cut(s) 498
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 203, 379
BfaI CTAG 1 cut(s) 608
BfoI RGCGCY 1 cut(s) 57
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 3 cut(s) 345, 432, 583
BlsI GCNGC 3 cut(s) 346, 433, 584
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 510, 724, 788
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 4 cut(s) 165, 594, 609, 655
BmtI GCTAGC 1 cut(s) 611
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 476
BsaJI CCNNGG 5 cut(s) 64, 543, 571, 622, 759
BsaWI WCCGGW 3 cut(s) 95, 636, 743
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 628
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 3 cut(s) 64, 510, 645
Bse3DI GCAATG 1 cut(s) 736
BseAI TCCGGA 2 cut(s) 95, 743
BseDI CCNNGG 5 cut(s) 64, 543, 571, 622, 759
BseLI CCNNNNNNNGG 2 cut(s) 116, 628
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 2 cut(s) 137, 690
BseNI ACTGG 3 cut(s) 64, 510, 645
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 418
BseYI CCCAGC 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 63, 69, 232, 548
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 2 cut(s) 124, 738
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 6 cut(s) 51, 86, 96, 637, 726, 744
BslI CCNNNNNNNGG 2 cut(s) 116, 628
BsmAI GTCTC 2 cut(s) 203, 379
BsnI GGCC 4 cut(s) 63, 69, 232, 548
BsoBI CYCGRG 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 124, 738
Bsp13I TCCGGA 2 cut(s) 95, 743
Bsp143I GATC 1 cut(s) 447
BspACI CCGC 6 cut(s) 107, 345, 467, 582, 629, 660
BspANI GGCC 4 cut(s) 63, 69, 232, 548
BspCNI CTCAG 2 cut(s) 136, 691
BspEI TCCGGA 2 cut(s) 95, 743
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 510, 724, 788
BspOI GCTAGC 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 736
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 3 cut(s) 64, 510, 645
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 5 cut(s) 64, 543, 571, 622, 759
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 3 cut(s) 543, 571, 759
Bst4CI ACNGT 2 cut(s) 214, 529
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 19, 123, 699
BstFNI CGCG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 450
BstMAI GTCTC 2 cut(s) 203, 379
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 6 cut(s) 60, 75, 128, 452, 582, 591
BstSCI CCNGG 1 cut(s) 85
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 293
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 4 cut(s) 63, 69, 232, 548
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 718
CviAII CATG 2 cut(s) 13, 355
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 3 cut(s) 19, 123, 699
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
EciI GGCGGA 3 cut(s) 96, 644, 649
Eco130I CCWWGG 3 cut(s) 543, 571, 759
Eco147I AGGCCT 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 623
EcoT14I CCWWGG 3 cut(s) 543, 571, 759
ErhI CCWWGG 3 cut(s) 543, 571, 759
FaeI CATG 2 cut(s) 16, 358
FatI CATG 2 cut(s) 12, 354
Fnu4HI GCNGC 3 cut(s) 345, 432, 583
Fsp4HI GCNGC 3 cut(s) 345, 432, 583
FspBI CTAG 1 cut(s) 608
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 345, 432, 583
GsaI CCCAGC 1 cut(s) 559
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 4 cut(s) 63, 69, 232, 548
HapII CCGG 6 cut(s) 51, 86, 96, 637, 726, 744
HhaI GCGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 16, 358
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 2 cut(s) 133, 499
HpaII CCGG 6 cut(s) 51, 86, 96, 637, 726, 744
HphI GGTGA 2 cut(s) 394, 532
Hpy166II GTNNAC 3 cut(s) 385, 540, 718
Hpy188I TCNGA 3 cut(s) 126, 396, 492
Hpy188III TCNNGA 4 cut(s) 96, 137, 196, 744
Hpy8I GTNNAC 3 cut(s) 385, 540, 718
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 4 cut(s) 121, 222, 426, 590
HpyCH4III ACNGT 2 cut(s) 214, 529
HpyCH4IV ACGT 2 cut(s) 475, 651
HpyCH4V TGCA 4 cut(s) 4, 434, 767, 782
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 75, 128, 452, 582, 591
HpyF3I CTNAG 3 cut(s) 19, 123, 699
HpySE526I ACGT 2 cut(s) 475, 651
Hsp92II CATG 2 cut(s) 16, 358
HspAI GCGC 1 cut(s) 54
Kpn2I TCCGGA 2 cut(s) 95, 743
Kzo9I GATC 1 cut(s) 447
LmnI GCTCC 2 cut(s) 88, 786
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 4 cut(s) 165, 594, 609, 655
MaeI CTAG 1 cut(s) 608
MaeII ACGT 2 cut(s) 475, 651
MaeIII GTNAC 2 cut(s) 188, 647
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 124, 738
MluCI AATT 8 cut(s) 222, 237, 256, 331, 409, 520, 670, 777
MluI ACGCGT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 493
MroI TCCGGA 2 cut(s) 95, 743
MseI TTAA 2 cut(s) 245, 273
MspI CCGG 6 cut(s) 51, 86, 96, 637, 726, 744
MspR9I CCNGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 6 cut(s) 60, 75, 128, 452, 582, 591
NciI CCSGG 1 cut(s) 87
NdeII GATC 1 cut(s) 447
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 2 cut(s) 16, 358
NlaIV GGNNCC 3 cut(s) 510, 724, 788
NmeAIII GCCGAG 2 cut(s) 45, 61
PceI AGGCCT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 346, 433, 584
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 651
PspFI CCCAGC 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 510, 724, 788
PspPI GGNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 698
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
SaqAI TTAA 2 cut(s) 245, 273
SatI GCNGC 3 cut(s) 345, 432, 583
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 2 cut(s) 124, 738
SfaNI GCATC 4 cut(s) 165, 594, 609, 655
SinI GGWCC 1 cut(s) 104
Sse9I AATT 8 cut(s) 222, 237, 256, 331, 409, 520, 670, 777
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 6 cut(s) 107, 345, 467, 582, 629, 660
SspI AATATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 608
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 3 cut(s) 543, 571, 759
TaaI ACNGT 2 cut(s) 214, 529
TaiI ACGT 2 cut(s) 478, 654
TaqI TCGA 2 cut(s) 72, 138
TasI AATT 8 cut(s) 222, 237, 256, 331, 409, 520, 670, 777
TauI GCSGC 2 cut(s) 347, 585
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 245, 273
Tru9I TTAA 2 cut(s) 245, 273
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 29, 408
TspGWI ACGGA 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 409
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.