Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004485.1

Orthogroup ID

OG0015549

Physical Location & Seq

Genomic Coordinates Reverse (-)

119171 .. 121056

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004485.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggctccttcaatttctaatttctcttctgtcttccttgttcttcttgcactgtatctcggcctcattcaccaggttatgagtcagattgctattaatatcactgttagtccccctaactactgcgcgcccattaatgccaccgatgtcgatcgcgttcagtttgccttgaacttagaattctgtcaagctgagtattttctatacggcgctcttggtaaaggcctcgacagcatcagtccggatttggcccaaggtggtccgcctcccattggtgctcagaaggccttgcttctcaatcctgatgtcgctcgtatcagtgaggagattgcttatcaacaagttggtaacatcaggtctattgttcagactgtgggaggaattccaaggcctctactaaatctcggtctcataaattggggattattctttgacctagcactggggccccttatcccttcatttaatccatacgaaagctccctcaaatttctgttaggggcctatgccatgccttatctcgcacaagtatcctatgttagcgccattccaagcctcaccacaaattcttcttcattatctttggcttcaaagcttttgccaatcaaggctggacagagtgcagtgatacgtacattgttgtaccggaatgcaactcaagtggtgcctccatatagtatcacggtgcgtgaattcaccgaggccatttcccagttcactaacaaacttggaaagtgtggcatcaaaagcgaaggcatcttactagctgacacaaccctcggggcagagaaccggacgaccagtaacgttttgtccgctgatgccaattcactatcgtacgcaagaacagagcgtgagatcttgaggattgtgtatggaaccggcaatgagcgcctgcccttcggattttttcccaaaggtgccaacggcaaaattgcaaggagctttctgctgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ferritin_2

Protein Analysis

319

Amino Acids

34.35

Weight (kDa)

8.68

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25290 FvH4_2g25301 FvH4_2g25303
rosa_chinensis	RchiOBHm_Chr6g0258881
rosa_laevigata	RLG00000014577 RLG00000014581
rosa_multiflora	Rmu_sc0004485.1_g000020 Rmu_sc0005290.1_g000003
rosa_roxburghii	Rroxscaffold_7G00206130
rosa_rugosa	Rorug05G0584100
rosa_samantha	Rh6AG100500 Rh6BG091800 Rh6CG089500 Rh6DG083800
rosa_wichuraiana	Rw0G005340 Rw6G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	664, 920
AccII	CGCG	2 cut(s)	128, 156
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	2 cut(s)	263, 816
AclI	AACGTT	1 cut(s)	807
AcsI	RAATTY	5 cut(s)	179, 381, 488, 565, 692
AfaI	GTAC	3 cut(s)	634, 644, 839
AfiI	CCNNNNNNNGG	2 cut(s)	272, 442
AgsI	TTSAA	3 cut(s)	12, 172, 591
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	5 cut(s)	191, 480, 595, 767, 945
AluI	AGCT	5 cut(s)	191, 480, 595, 767, 945
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	779
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	8 cut(s)	61, 223, 249, 285, 389, 446, 501, 702
ApaI	GGGCCC	1 cut(s)	450
ApoI	RAATTY	5 cut(s)	179, 381, 488, 565, 692
AseI	ATTAAT	2 cut(s)	96, 135
AspLEI	GCGC	5 cut(s)	128, 130, 212, 545, 894
AspS9I	GGNCC	5 cut(s)	250, 260, 446, 447, 501
AsuHPI	GGTGA	3 cut(s)	62, 550, 688
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	450
BanI	GGYRCC	2 cut(s)	664, 920
BanII	GRGCYC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	223, 943
BciT130I	CCWGG	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	437, 764, 958
BfoI	RGCGCY	3 cut(s)	213, 546, 895
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	858
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	5 cut(s)	250, 260, 446, 447, 501
BmiI	GGNNCC	8 cut(s)	6, 447, 448, 449, 502, 666, 880, 922
BmrFI	CCNGG	1 cut(s)	74
BmrI	ACTGGG	2 cut(s)	452, 706
BmsI	GCATC	4 cut(s)	243, 750, 765, 811
BmuI	ACTGGG	2 cut(s)	452, 706
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	642, 883
BsaAI	YACGTR	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	253, 386, 699, 778
BsaWI	WCCGGW	3 cut(s)	241, 645, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 442
Bse118I	RCCGGY	1 cut(s)	881
Bse1I	ACTGG	3 cut(s)	447, 712, 801
Bse3DI	GCAATG	1 cut(s)	892
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	4 cut(s)	253, 386, 699, 778
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	272, 442
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	2 cut(s)	183, 293
BseNI	ACTGG	3 cut(s)	447, 712, 801
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	2 cut(s)	128, 156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 448, 503, 704
BshNI	GGYRCC	2 cut(s)	664, 920
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	4 cut(s)	242, 646, 793, 882
BsiWI	CGTACG	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	272, 442
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 448, 503, 704
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	779
Bsp120I	GGGCCC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	280, 450
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	151, 858, 954
BspACI	CCGC	2 cut(s)	263, 816
BspANI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 448, 503, 704
BspCNI	CTCAG	2 cut(s)	184, 292
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	2 cut(s)	128, 156
BspLI	GGNNCC	8 cut(s)	6, 447, 448, 449, 502, 666, 880, 922
BspT107I	GGYRCC	2 cut(s)	664, 920
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	892
BsrFI	RCCGGY	1 cut(s)	881
BsrI	ACTGG	3 cut(s)	447, 712, 801
BssAI	RCCGGY	1 cut(s)	881
BssECI	CCNNGG	4 cut(s)	253, 386, 699, 778
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	3 cut(s)	151, 858, 954
BssT1I	CCWWGG	2 cut(s)	253, 386
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	4 cut(s)	54, 106, 373, 685
Bst6I	CTCTTC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	128, 896
BstDEI	CTNAG	3 cut(s)	175, 192, 279
BstFNI	CGCG	2 cut(s)	128, 156
BstH2I	RGCGCY	3 cut(s)	213, 546, 895
BstHHI	GCGC	5 cut(s)	128, 130, 212, 545, 894
BstKTI	GATC	3 cut(s)	154, 861, 957
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	151, 858, 954
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 284, 747, 891
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	450
BstSNI	TACGTA	1 cut(s)	632
BstUI	CGCG	2 cut(s)	128, 156
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	858
BstYI	RGATCY	1 cut(s)	858
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	8 cut(s)	63, 225, 251, 287, 391, 448, 503, 704
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	5 cut(s)	50, 102, 325, 440, 630
Cac8I	GCNNGC	2 cut(s)	128, 896
CfoI	GCGC	5 cut(s)	128, 130, 212, 545, 894
Cfr10I	RCCGGY	1 cut(s)	881
Cfr13I	GGNCC	5 cut(s)	250, 260, 446, 447, 501
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	633, 643, 838
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	1 cut(s)	511
CviQI	GTAC	3 cut(s)	633, 643, 838
DdeI	CTNAG	3 cut(s)	175, 192, 279
DpnI	GATC	3 cut(s)	153, 860, 956
DpnII	GATC	3 cut(s)	151, 858, 954
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	252
Eco105I	TACGTA	1 cut(s)	632
Eco130I	CCWWGG	2 cut(s)	253, 386
Eco147I	AGGCCT	3 cut(s)	225, 287, 391
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	779
EcoO109I	RGGNCCY	3 cut(s)	446, 447, 501
EcoRI	GAATTC	3 cut(s)	179, 381, 692
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	2 cut(s)	253, 386
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	253, 386
FaeI	CATG	1 cut(s)	514
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	3 cut(s)	437, 764, 958
GlaI	GCGC	5 cut(s)	127, 129, 211, 544, 893
HaeII	RGCGCY	3 cut(s)	213, 546, 895
HaeIII	GGCC	8 cut(s)	63, 225, 251, 287, 391, 448, 503, 704
HapII	CCGG	4 cut(s)	242, 646, 793, 882
HhaI	GCGC	5 cut(s)	128, 130, 212, 545, 894
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	5 cut(s)	126, 128, 210, 543, 892
HinP1I	GCGC	5 cut(s)	126, 128, 210, 543, 892
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	4 cut(s)	242, 646, 793, 882
HphI	GGTGA	3 cut(s)	62, 550, 688
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	4 cut(s)	87, 282, 369, 905
Hpy188III	TCNNGA	3 cut(s)	242, 302, 862
Hpy8I	GTNNAC	1 cut(s)	717
HpyAV	CCTTC	5 cut(s)	18, 277, 468, 746, 910
HpyCH4III	ACNGT	4 cut(s)	54, 106, 373, 685
HpyCH4IV	ACGT	2 cut(s)	631, 807
HpyCH4V	TGCA	4 cut(s)	50, 623, 653, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 284, 747, 891
HpyF3I	CTNAG	3 cut(s)	175, 192, 279
HpySE526I	ACGT	2 cut(s)	631, 807
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	5 cut(s)	126, 128, 210, 543, 892
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	151, 858, 954
LmnI	GCTCC	3 cut(s)	10, 485, 942
LweI	GCATC	4 cut(s)	243, 750, 765, 811
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	3 cut(s)	437, 764, 958
MaeII	ACGT	2 cut(s)	631, 807
MaeIII	GTNAC	2 cut(s)	347, 803
MalI	GATC	3 cut(s)	153, 860, 956
MboI	GATC	3 cut(s)	151, 858, 954
MboII	GAAGA	5 cut(s)	18, 25, 35, 561, 564
MflI	RGATCY	1 cut(s)	858
MhlI	GDGCHC	2 cut(s)	280, 450
MlyI	GAGTC	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	3 cut(s)	96, 135, 465
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	4 cut(s)	242, 646, 793, 882
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	128, 156
MwoI	GCNNNNNNNGC	4 cut(s)	231, 284, 747, 891
NdeII	GATC	3 cut(s)	151, 858, 954
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	8 cut(s)	6, 447, 448, 449, 502, 666, 880, 922
NmeAIII	GCCGAG	1 cut(s)	39
PauI	GCGCGC	1 cut(s)	126
PceI	AGGCCT	3 cut(s)	225, 287, 391
PctI	GAATGC	1 cut(s)	655
Pfl23II	CGTACG	1 cut(s)	837
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	632
PshBI	ATTAAT	2 cut(s)	96, 135
Psp1406I	AACGTT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspLI	CGTACG	1 cut(s)	837
PspN4I	GGNNCC	8 cut(s)	6, 447, 448, 449, 502, 666, 880, 922
PspOMI	GGGCCC	1 cut(s)	446
PspPI	GGNCC	5 cut(s)	250, 260, 446, 447, 501
PsuI	RGATCY	1 cut(s)	858
PteI	GCGCGC	1 cut(s)	126
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	3 cut(s)	634, 644, 839
RsaNI	GTAC	3 cut(s)	633, 643, 838
SaqAI	TTAA	3 cut(s)	96, 135, 465
Sau3AI	GATC	3 cut(s)	151, 858, 954
Sau96I	GGNCC	5 cut(s)	250, 260, 446, 447, 501
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	280, 450
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	4 cut(s)	243, 750, 765, 811
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	657, 862
SmoI	CTYRAG	2 cut(s)	657, 862
SnaBI	TACGTA	1 cut(s)	632
SseBI	AGGCCT	3 cut(s)	225, 287, 391
SsiI	CCGC	2 cut(s)	263, 816
SspMI	CTAG	3 cut(s)	437, 764, 958
StuI	AGGCCT	3 cut(s)	225, 287, 391
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	2 cut(s)	253, 386
TaaI	ACNGT	4 cut(s)	54, 106, 373, 685
TaiI	ACGT	2 cut(s)	634, 810
TaqI	TCGA	2 cut(s)	150, 228
TaqII	GACCGA	1 cut(s)	395
Tru1I	TTAA	3 cut(s)	96, 135, 465
Tru9I	TTAA	3 cut(s)	96, 135, 465
TscAI	CASTG	5 cut(s)	57, 109, 325, 447, 630
TspDTI	ATGAA	2 cut(s)	450, 564
TspRI	CASTG	5 cut(s)	57, 109, 325, 447, 630
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	2 cut(s)	96, 135
XapI	RAATTY	5 cut(s)	179, 381, 488, 565, 692
XspI	CTAG	3 cut(s)	437, 764, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.