FvH4_2g25303

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015549
Physical Location & Seq
Forward (+)
20588494 .. 20589689
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g25303.t1

Sequence Viewer

Length: 870 bp
ATGGCTCCTTCAATTTCCACTTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTACCTCAACCTCATTTGCCTGAACTTAGAATTCTGTCAAGCCGAGTACTTTCTGTACGGCGCTACTGGCCAAGGCCTCGACAGCTATGCTCCGGGTTTGTCCGGAGGTGGTCCGCCTCCCATCGGTGCTCAGAAGGCCATGCTTCTCGACGACCCTGATGTTGCTCGCACCAGTGAGGAGATTGCTTATCAACAAATTGGTAACATCAGGTCTATTGTTCAGAATGGAGGAGGAATTCCAAGGCCTCTACTGAATCTCGGACTCGTAAATTGGGGATTATTTTTTGACCTAGCACTGAAGACACCTCTAATCCCTCCATTTAATCCATACGCGAACTCACTCAATTTTCTGTTAGGCGCCTATGCCATGCCTGATCTCGCACAAATCTCCTATGTCAGCTCCATTCCGAGCCTCACCACAAATTCTTCTTCATTATCTTTGGCTGCAAAGCTTTTGGCGATCAAGGCTGGACAAAGTGCGGTGCTACGTGCGTTGTTGTATCCGAAAGCGACTCAACTGGTGCCTCCATATAATTTCACGGTGCGTGAGTTCACCAAGGCCATTTCCCAGCTCACTAACGACCTTGGCAAGTGCGGCATCAAAAGCGAAGGCATCTTGCTAGCTAACACAACCCTCGGGGCGGAGAACCGGACGACCAGTAACGTTCTGTCCGCCGATGCCAATTCGTTGTCCTACGCAAGAACAGAGCCTGAGATCTTGAGGATTGTGTACGGAGCCGGCAATGAGCACCTTCCCGGAGGATTTTTCCCCTTGGGTGCAAACGGCAAAATTGCAAGGAGCTACCTCCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

290

Amino Acids

30.74

Weight (kDa)

6.58

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 24 - 185 8e-17 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 410, 574
AccII CGCG 1 cut(s) 386
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 5 cut(s) 167, 533, 648, 695, 726
AclI AACGTT 1 cut(s) 717
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 3 cut(s) 83, 288, 475
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 4 cut(s) 56, 101, 110, 785
AfiI CCNNNNNNNGG 2 cut(s) 176, 694
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 6 cut(s) 138, 453, 505, 625, 677, 855
AluI AGCT 6 cut(s) 138, 453, 505, 625, 677, 855
Alw21I GWGCWC 2 cut(s) 184, 804
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 689
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 5 cut(s) 121, 127, 189, 296, 612
ApeKI GCWGC 1 cut(s) 497
ApoI RAATTY 3 cut(s) 83, 288, 475
AspLEI GCGC 2 cut(s) 116, 413
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 2 cut(s) 147, 810
AsuHPI GGTGA 2 cut(s) 460, 598
AsuNHI GCTAGC 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 123
BanI GGYRCC 2 cut(s) 410, 574
BbsI GAAGAC 2 cut(s) 25, 359
Bbv12I GWGCWC 2 cut(s) 184, 804
BbvI GCAGC 1 cut(s) 484
BccI CCATC 1 cut(s) 182
BceAI ACGGC 2 cut(s) 127, 853
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 2 cut(s) 147, 810
BfaI CTAG 2 cut(s) 344, 674
BfoI RGCGCY 2 cut(s) 117, 414
BfuI GTATCC 1 cut(s) 564
BglII AGATCT 1 cut(s) 768
BisI GCNGC 2 cut(s) 498, 649
BlsI GCNGC 2 cut(s) 499, 650
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 147, 810
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 4 cut(s) 6, 412, 576, 790
BmrFI CCNGG 2 cut(s) 147, 810
BmsI GCATC 3 cut(s) 660, 675, 721
BmtI GCTAGC 1 cut(s) 677
BpiI GAAGAC 2 cut(s) 25, 359
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 2 cut(s) 147, 810
BsaAI YACGTR 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 6 cut(s) 124, 293, 609, 637, 688, 825
BsaWI WCCGGW 2 cut(s) 155, 702
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 694
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 4 cut(s) 124, 225, 576, 711
Bse3DI GCAATG 1 cut(s) 802
BseAI TCCGGA 1 cut(s) 155
BseDI CCNNGG 6 cut(s) 124, 293, 609, 637, 688, 825
BseLI CCNNNNNNNGG 2 cut(s) 176, 694
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 2 cut(s) 197, 756
BseNI ACTGG 4 cut(s) 124, 225, 576, 711
BseRI GAGGAG 2 cut(s) 245, 297
BseXI GCAGC 1 cut(s) 484
BseYI CCCAGC 1 cut(s) 621
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 5 cut(s) 123, 129, 191, 298, 614
BshNI GGYRCC 2 cut(s) 410, 574
BsiHKAI GWGCWC 2 cut(s) 184, 804
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 5 cut(s) 146, 156, 703, 792, 810
BslI CCNNNNNNNGG 2 cut(s) 176, 694
BsnI GGCC 5 cut(s) 123, 129, 191, 298, 614
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 184, 804
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 3 cut(s) 427, 513, 768
BspACI CCGC 5 cut(s) 167, 533, 648, 695, 726
BspANI GGCC 5 cut(s) 123, 129, 191, 298, 614
BspCNI CTCAG 2 cut(s) 196, 757
BspEI TCCGGA 1 cut(s) 155
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 4 cut(s) 6, 412, 576, 790
BspOI GCTAGC 1 cut(s) 677
BspT107I GGYRCC 2 cut(s) 410, 574
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 4 cut(s) 124, 225, 576, 711
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 6 cut(s) 124, 293, 609, 637, 688, 825
BssMI GATC 3 cut(s) 427, 513, 768
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 5 cut(s) 124, 293, 609, 637, 825
Bst4CI ACNGT 2 cut(s) 54, 595
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 220, 675, 793
BstDEI CTNAG 3 cut(s) 79, 183, 765
BstFNI CGCG 1 cut(s) 386
BstH2I RGCGCY 2 cut(s) 117, 414
BstHHI GCGC 2 cut(s) 116, 413
BstKTI GATC 3 cut(s) 430, 516, 771
BstMBI GATC 3 cut(s) 427, 513, 768
BstMWI GCNNNNNNNGC 6 cut(s) 120, 135, 188, 518, 648, 657
BstSCI CCNGG 2 cut(s) 145, 808
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 2 cut(s) 25, 359
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 5 cut(s) 123, 129, 191, 298, 614
BtsIMutI CAGTG 3 cut(s) 50, 232, 347
Cac8I GCNNGC 3 cut(s) 220, 675, 793
CaiI CAGNNNCTG 1 cut(s) 764
CfoI GCGC 2 cut(s) 116, 413
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 4 cut(s) 55, 100, 109, 784
CviAII CATG 2 cut(s) 193, 421
CviQI GTAC 4 cut(s) 55, 100, 109, 784
DdeI CTNAG 3 cut(s) 79, 183, 765
DinI GGCGCC 1 cut(s) 412
DpnI GATC 3 cut(s) 429, 515, 770
DpnII GATC 3 cut(s) 427, 513, 768
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 3 cut(s) 156, 710, 715
Eco130I CCWWGG 5 cut(s) 124, 293, 609, 637, 825
Eco147I AGGCCT 2 cut(s) 129, 298
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 689
EcoRI GAATTC 2 cut(s) 83, 288
EcoT14I CCWWGG 5 cut(s) 124, 293, 609, 637, 825
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
ErhI CCWWGG 5 cut(s) 124, 293, 609, 637, 825
FaeI CATG 2 cut(s) 196, 424
FatI CATG 2 cut(s) 192, 420
Fnu4HI GCNGC 2 cut(s) 498, 649
Fsp4HI GCNGC 2 cut(s) 498, 649
FspBI CTAG 2 cut(s) 344, 674
GlaI GCGC 2 cut(s) 115, 412
GluI GCNGC 2 cut(s) 498, 649
GsaI CCCAGC 1 cut(s) 625
HaeII RGCGCY 2 cut(s) 117, 414
HaeIII GGCC 5 cut(s) 123, 129, 191, 298, 614
HapII CCGG 5 cut(s) 146, 156, 703, 792, 810
HhaI GCGC 2 cut(s) 116, 413
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 2 cut(s) 196, 424
Hin6I GCGC 2 cut(s) 114, 411
HinP1I GCGC 2 cut(s) 114, 411
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 307, 315, 565
HpaII CCGG 5 cut(s) 146, 156, 703, 792, 810
HphI GGTGA 2 cut(s) 460, 598
Hpy166II GTNNAC 2 cut(s) 606, 784
Hpy188I TCNGA 5 cut(s) 186, 276, 314, 462, 558
Hpy188III TCNNGA 3 cut(s) 156, 200, 772
Hpy8I GTNNAC 2 cut(s) 606, 784
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 18, 181, 656, 815
HpyCH4III ACNGT 2 cut(s) 54, 595
HpyCH4IV ACGT 2 cut(s) 541, 717
HpyCH4V TGCA 4 cut(s) 50, 500, 833, 848
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 135, 188, 518, 648, 657
HpyF3I CTNAG 3 cut(s) 79, 183, 765
HpySE526I ACGT 2 cut(s) 541, 717
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 2 cut(s) 196, 424
HspAI GCGC 2 cut(s) 114, 411
KasI GGCGCC 1 cut(s) 410
Kpn2I TCCGGA 1 cut(s) 155
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Kzo9I GATC 3 cut(s) 427, 513, 768
LmnI GCTCC 5 cut(s) 10, 148, 458, 788, 852
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 3 cut(s) 660, 675, 721
MaeI CTAG 2 cut(s) 344, 674
MaeII ACGT 2 cut(s) 541, 717
MaeIII GTNAC 2 cut(s) 254, 713
MalI GATC 3 cut(s) 429, 515, 770
MboI GATC 3 cut(s) 427, 513, 768
MboII GAAGA 6 cut(s) 18, 25, 35, 364, 471, 474
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 184, 804
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 2 cut(s) 309, 559
Mox20I TGGCCA 1 cut(s) 123
MroI TCCGGA 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 791
MscI TGGCCA 1 cut(s) 123
MseI TTAA 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 5 cut(s) 146, 156, 703, 792, 810
MspR9I CCNGG 2 cut(s) 147, 810
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 6 cut(s) 120, 135, 188, 518, 648, 657
NaeI GCCGGC 1 cut(s) 793
NarI GGCGCC 1 cut(s) 411
NciI CCSGG 2 cut(s) 147, 810
NdeII GATC 3 cut(s) 427, 513, 768
NgoMIV GCCGGC 1 cut(s) 791
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 2 cut(s) 196, 424
NlaIV GGNNCC 4 cut(s) 6, 412, 576, 790
NmeAIII GCCGAG 1 cut(s) 121
PceI AGGCCT 2 cut(s) 129, 298
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 2 cut(s) 499, 650
PleI GAGTC 2 cut(s) 309, 559
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 2 cut(s) 309, 559
Ppu21I YACGTR 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 717
PspFI CCCAGC 1 cut(s) 621
PspN4I GGNNCC 4 cut(s) 6, 412, 576, 790
PspPI GGNCC 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 1 cut(s) 768
RsaI GTAC 4 cut(s) 56, 101, 110, 785
RsaNI GTAC 4 cut(s) 55, 100, 109, 784
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 498, 649
Sau3AI GATC 3 cut(s) 427, 513, 768
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 309, 559
ScrFI CCNGG 2 cut(s) 147, 810
SduI GDGCHC 2 cut(s) 184, 804
SfaNI GCATC 3 cut(s) 660, 675, 721
SfoI GGCGCC 1 cut(s) 412
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
SseBI AGGCCT 2 cut(s) 129, 298
SsiI CCGC 5 cut(s) 167, 533, 648, 695, 726
SspDI GGCGCC 1 cut(s) 410
SspMI CTAG 2 cut(s) 344, 674
StuI AGGCCT 2 cut(s) 129, 298
StyD4I CCNGG 2 cut(s) 145, 808
StyI CCWWGG 5 cut(s) 124, 293, 609, 637, 825
TaaI ACNGT 2 cut(s) 54, 595
TaiI ACGT 2 cut(s) 544, 720
TaqI TCGA 2 cut(s) 132, 201
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 3 cut(s) 57, 232, 354
TseI GCWGC 1 cut(s) 497
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 3 cut(s) 57, 232, 354
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 3 cut(s) 83, 288, 475
XspI CTAG 2 cut(s) 344, 674
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.