Rw0G005340

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00207
OG0015549
Physical Location & Seq
Reverse (-)
17 .. 1285
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005340.1

Sequence Viewer

Length: 471 bp
ATGGCTCCTTCAATTTCTAATTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCAGATTGCTATTAATATCACCGTTAGTCCCCCTAACTACTGCGCGCCCATTAATGCCACCGATGTCGATCGCGTTCAGTTTGCCTTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGATTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCAGAAGGCCTTGCTTCTCAATCCTGATGTCGCTCGTATCAGTGAGGAGATTGGTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGAATTCCAAGGCCTCTACTAAATCTCGGCCTCATAAATTGGGGATTATTCTTTGACCTAGCACTGGGGAAAACCCCTTATCCCTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

156

Amino Acids

16.8

Weight (kDa)

4.83

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 48 - 135 4.5e-09 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 128, 156
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 179, 381
AfiI CCNNNNNNNGG 2 cut(s) 272, 442
AgsI TTSAA 2 cut(s) 12, 172
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw21I GWGCWC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 6 cut(s) 61, 223, 249, 285, 389, 406
ApoI RAATTY 2 cut(s) 179, 381
AseI ATTAAT 2 cut(s) 96, 135
AspLEI GCGC 3 cut(s) 128, 130, 212
AspS9I GGNCC 2 cut(s) 250, 260
AsuHPI GGTGA 2 cut(s) 62, 94
AvaII GGWCC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 437
BfoI RGCGCY 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 250, 260
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 253, 386
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 442
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 253, 386
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 272, 442
BseMII CTCAG 2 cut(s) 183, 293
BseNI ACTGG 1 cut(s) 447
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 338
Bsh1236I CGCG 2 cut(s) 128, 156
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 6 cut(s) 63, 225, 251, 287, 391, 408
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 272, 442
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 6 cut(s) 63, 225, 251, 287, 391, 408
Bsp1286I GDGCHC 1 cut(s) 280
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 263
BspANI GGCC 6 cut(s) 63, 225, 251, 287, 391, 408
BspCNI CTCAG 2 cut(s) 184, 292
BspEI TCCGGA 1 cut(s) 241
BspFNI CGCG 2 cut(s) 128, 156
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 253, 386
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 253, 386
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 54, 106, 373
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 175, 192, 279
BstFNI CGCG 2 cut(s) 128, 156
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 128, 130, 212
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 216, 231, 284
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 2 cut(s) 128, 156
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 6 cut(s) 63, 225, 251, 287, 391, 408
BtsIMutI CAGTG 3 cut(s) 50, 325, 440
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 3 cut(s) 128, 130, 212
Cfr13I GGNCC 2 cut(s) 250, 260
CsiI ACCWGGT 1 cut(s) 72
CviJI RGCY 8 cut(s) 5, 63, 191, 225, 251, 287, 391, 408
CviKI_1 RGCY 8 cut(s) 5, 63, 191, 225, 251, 287, 391, 408
DdeI CTNAG 3 cut(s) 175, 192, 279
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 253, 386
Eco147I AGGCCT 3 cut(s) 225, 287, 391
Eco47I GGWCC 1 cut(s) 260
EcoRI GAATTC 2 cut(s) 179, 381
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 253, 386
ErhI CCWWGG 2 cut(s) 253, 386
FaiI YATR 3 cut(s) 80, 205, 413
FaqI GGGAC 1 cut(s) 96
FspBI CTAG 1 cut(s) 437
GlaI GCGC 3 cut(s) 127, 129, 211
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 6 cut(s) 63, 225, 251, 287, 391, 408
HapII CCGG 1 cut(s) 242
HhaI GCGC 3 cut(s) 128, 130, 212
Hin6I GCGC 3 cut(s) 126, 128, 210
HinP1I GCGC 3 cut(s) 126, 128, 210
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 62, 94
Hpy188I TCNGA 3 cut(s) 87, 282, 369
Hpy188III TCNNGA 2 cut(s) 242, 302
HpyAV CCTTC 2 cut(s) 18, 277
HpyCH4III ACNGT 3 cut(s) 54, 106, 373
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 231, 284
HpyF3I CTNAG 3 cut(s) 175, 192, 279
HspAI GCGC 3 cut(s) 126, 128, 210
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 59, 86, 255, 315, 340, 428
LweI GCATC 1 cut(s) 243
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 347
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 3 cut(s) 18, 25, 35
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 5 cut(s) 12, 19, 179, 381, 415
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 7 cut(s) 74, 236, 276, 316, 371, 402, 419
MroI TCCGGA 1 cut(s) 241
MseI TTAA 3 cut(s) 96, 135, 469
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 128, 156
MwoI GCNNNNNNNGC 3 cut(s) 216, 231, 284
NdeII GATC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 39, 384
PauI GCGCGC 1 cut(s) 126
PceI AGGCCT 3 cut(s) 225, 287, 391
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshBI ATTAAT 2 cut(s) 96, 135
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 250, 260
PteI GCGCGC 1 cut(s) 126
PvuI CGATCG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 96, 135, 469
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 250, 260
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 280
SetI ASST 5 cut(s) 78, 193, 259, 359, 438
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 1 cut(s) 260
Sse9I AATT 5 cut(s) 12, 19, 179, 381, 415
SseBI AGGCCT 3 cut(s) 225, 287, 391
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 437
StuI AGGCCT 3 cut(s) 225, 287, 391
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 253, 386
TaaI ACNGT 3 cut(s) 54, 106, 373
TaqI TCGA 2 cut(s) 150, 228
TasI AATT 5 cut(s) 12, 19, 179, 381, 415
Tru1I TTAA 3 cut(s) 96, 135, 469
Tru9I TTAA 3 cut(s) 96, 135, 469
TscAI CASTG 3 cut(s) 57, 325, 447
TspDTI ATGAA 1 cut(s) 454
TspRI CASTG 3 cut(s) 57, 325, 447
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 2 cut(s) 96, 135
XapI RAATTY 2 cut(s) 179, 381
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.