Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009282

Physical Location & Seq

Genomic Coordinates Forward (+)

20667083 .. 20673582

Gene Structure 6500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25510.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

ATGGAGGCCACACCTCCTCCGTCCGATTCACCGTCTATAAAACCCATAAACAAGTCCGTGGTCCACCGGATCTGCGCCGGCCAAGTCATCCTCGACCTCTCGGCCGCCGTCAAAGAGTTGGTCGAGAACAGCCTCGACGCCGGCGCCACCGCCATCGAAATCTCCCTCAAAGACTACGGCAAAGAGTGGTTCCAGGTCATCGACAACGGCTGCGGCATTTCGCCGGGAAACTTCAAGGTCCTTGCCCTCAAGCACCACACTTCCAAGCTCGCCGGATTCCCTGACCTCCAGTCTCTCACGACGTTCGGCTTCCGCGGCGAGGCCTTGAGCTCTCTGTGTGCTTTGGGGAACTTGACGGTGGAAACCAGGACTAAGTACGAGCAGGTTGCTACGCACTTGAGTTTTGACCACTCCGGTGTGCTGGTGGCGGAGAAGAAGACGGCGCGGCAAGTCGGCACAACCGTGACGGTTAAGAATCTGTTTGTGAATTTACCGGTGAGGTGCAAGGAGTTCAGTCGCAACATTCGGAAGGAGTATGGGAAGCTTGTTTCTCTACTGAATGCCTATGCTCTTATTGCAAAAGGAGTTCGGTTAGTTTGCACGAATGCCATAGGTAGAAATGCAAAGTCTGTGGTGCTTAAAACGCAGGGAAGCGGTTCACTTAAGGATAATATTGTGACATTGTTTGGGATGAGCACTTTCAGTTGTTTAGAGCCTGTGAGTATATCTGTATCCGATAGTTGCAAGGTTGAAGGGTTTCTTTCCAAGTCAGGACAGGGTAGTGGTCGGAACATGGGAGACAGGCAGTTCTTTTTTGTGAATGGCCGACCTGTGGATATGCCTAAAGTTACAAAGCTTGTGAATGAGTTGTATAGAGGGGCAAACTCCCAGCAGCATCCCATTGCCATATTGAATTTCACTGTTCCGACAAGAGCGTGTGATGTCAATGTTACTCCTGATAAAAGGAAAGTGTTCTTTTCTGATGAGAGCTTTATACTGGTTGCCTTAAGGGAGGGTCTGCAGCAGATATATTCCAGTAGTAATGCTCGTTACTCTGTTAATAAACTGGAGGAGCCTGCCAAAGAAGCAGGCAGGTCTCAGTTTTGTTCACCTGATCAAAGGTCTTGTAAACAATTAACTAGAGATGATGATGAGGATGTTCCTGAAGAAGTTCTTGTTGTTGAGAAATCTGAGGAGTCTACTGAGGAAGGAGGCAGGTCTGAATTCTATTTTCCTGGTCACAGGTCACATATGTTTCTAAAACAATCATCTATAGATTCTGTACCTAAAGAAATTAGTCCTGAGGATCACTCTCCAGAAGGTGATGCACCTCTGAAAGTTGTGGAAACTGATTCTGAACCTACTCATGATGAAGAAGGGTTTAGCCAAGAAAATTCAATGTGGAAGGATAGCCATGAAAATTCAATGGGGAAGGATTTCGCTTTAAGAGTACACAACATTAAAAAGGCCCATGGAACTAGTCAATTGACAAAGAATCTCACTAGTATGAGAGCTGATCGAATTGCAGCAAAGGAAGATTCATATAGTCGCCCAAGCTCTGTACAAGCATCACTTAATGAGTTTGTAACTGTAACTAAAAGAAAGCATGATAGTATTAGCCCAGTCCTGTCTGAAATGCCTGTCCTGAGGAACCAAAGTCTTCAGTGTCAATCCAAGACTGATTTACCTGATGCTGTTTCAAAACCCCCATTTAATCATGACCGGATCGATGATTCTACTGAAGTTGATAATTCTTCTGAAGTTTGTGTGGATGAGCCATCCAAGTATCTTAGAGCAGATAGGATCCACAACAAAGTTAGAGTTCCAGTTTCTCCTGGAGGCAAGAATGAGGGTGAAAGACTTGGAGAAGCTCAACAGGAAACAGTGCCTCTTGCTGATATGACACCAACTGCTTCACCTAGCAGGGATATAAATCTGACTGAAGATCTTCCAGCTGCATCACCTTCCTCATGTGTATTGTTGAATACTCCAAAGCCTTCTTCTGATCTTATGATGTGTTCAACCTTAACATTTAGTTTCCAAGACCTAAAGACAAGGAGGCAGCAAATATTTTCTAGATTGCAATCAAGCATGCCTGGAGTAAAAGCACAAAGGTGCTATGCAGCTGCAACACTGGAGCTTTCTCAACCAGAAAATGAGGAGCGGAAGGCAAGGGCCTTAGCTGCAGCTACCAAGGAGTTGGAAAGACTTTTCAGAAAGGAAGATTTTGGTAAAATGAAGGTGATTGGGCAATTCAATCTTGGCTTCATCATTGGAAAGTTAGATCAAGATTTATTTATTGTAGATCAGCATGCAGCTGATGAGAAGTACAACTTTGAGCGTCTGTCACAATCTACCATCTTAAACCAACAGCCTTTGCTTAGGCCGTTGAGGTTGGAGTTGTCTCCTGAAGAAGAAGTTGTTGCTTCAATGCACATAGACATAATCAGGAAAAATGGATTTTCTTTGGAAGAGGATCCACATGCTCCACCTTGTCACCATTTTAAATTGAAAGCTGTTCCCTTCAGCAAAAACATAACTTTTGGAGTTGAAGATGTTAAGGACTTGATTTCCACTCTTGCTGATAGTCATGGGGAATGTGCAATCATCGGTAGTTATAAGATGGACACTGTTGATTCTGTTTGCCCTTCTAGAGTTCGAGCAATGCTGGCATCACGTGCATGCAGATCATCTGTTATGATTGGAGATGCCCTTGGAAGAAATGAGATGCGGAAGATTCTTGAGCATCTGGCAGGTCTGAAGTCTCCTTGGAATTGTCCTCATGGCAGGCCAACCATGCGACATTTGATCGACTTGAAAACCATACGCAGGTCTGAAGAAAACGATGAAGCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

954

Amino Acids

105.55

Weight (kDa)

6.38

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_mis_repair	PF01119	8 - 114	6.7e-24	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	519 - 564	4.3e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02460 AT4G02460 AT4G02460 AT4G02460
fragaria_vesca	FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510 FvH4_2g25510
malus_domestica	MD11G1305800.v1.1
prunus_persica	Prupe.8G259200_v2.0.a1 Prupe.8G259200_v2.0.a1
pyrus_communis	pycom11g26760
rosa_chinensis	RchiOBHm_Chr6g0293721
rosa_laevigata	RLG00000011929
rosa_roxburghii	Rroxscaffold_7G00173950
rosa_rugosa	Rorug06G0237600
rosa_samantha	Rh6AG350400 Rh6BG357900 Rh6CG364700 Rh6DG351600
rosa_wichuraiana	Rw6G030510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2619
Acc36I	ACCTGC	5 cut(s)	373, 1083, 1206, 2744, 2820
AccB1I	GGYRCC	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	2164
AccI	GTMKAC	1 cut(s)	1199
AccII	CGCG	2 cut(s)	315, 445
AclWI	GGATC	7 cut(s)	77, 1314, 1733, 1798, 1811, 2471, 2484
AcoI	YGGCCR	3 cut(s)	79, 102, 823
AcsI	RAATTY	5 cut(s)	487, 913, 1223, 1393, 1420
AcuI	CTGAAG	9 cut(s)	1185, 1646, 1761, 1779, 1962, 2430, 2509, 2780, 2856
AcvI	CACGTG	1 cut(s)	2678
AcyI	GRCGYC	2 cut(s)	138, 144
AfaI	GTAC	5 cut(s)	377, 1284, 1452, 1563, 2330
AfiI	CCNNNNNNNGG	3 cut(s)	319, 832, 2829
AflII	CTTAAG	2 cut(s)	662, 1006
AgeI	ACCGGT	1 cut(s)	493
AhdI	GACNNNNNGTC	1 cut(s)	289
AhlI	ACTAGT	2 cut(s)	1478, 1502
AjnI	CCWGG	5 cut(s)	192, 365, 1234, 1834, 2095
AjuI	GAANNNNNNNTTGG	2 cut(s)	1984, 2016
AleI	CACNNNNGTG	3 cut(s)	414, 461, 2113
Alw21I	GWGCWC	2 cut(s)	332, 698
Alw26I	GTCTC	5 cut(s)	297, 792, 1101, 2409, 2769
AlwI	GGATC	7 cut(s)	77, 1314, 1733, 1798, 1811, 2471, 2484
AoxI	GGCC	9 cut(s)	6, 79, 102, 321, 823, 1467, 2175, 2384, 2789
ApoI	RAATTY	5 cut(s)	487, 913, 1223, 1393, 1420
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	6 cut(s)	655, 756, 971, 1170, 1436, 1947
AspLEI	GCGC	3 cut(s)	77, 146, 445
AspS9I	GGNCC	4 cut(s)	61, 238, 1468, 2175
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	9 cut(s)	21, 508, 1101, 1334, 1865, 1908, 1953, 2254, 2489
AvaII	GGWCC	2 cut(s)	61, 238
AxyI	CCTNAGG	2 cut(s)	1302, 1646
BamHI	GGATCC	2 cut(s)	1803, 2476
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	2678
BbsI	GAAGAC	2 cut(s)	443, 1652
Bbv12I	GWGCWC	2 cut(s)	332, 698
BccI	CCATC	4 cut(s)	161, 1786, 2366, 2617
BceAI	ACGGC	5 cut(s)	92, 193, 223, 456, 2371
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	5 cut(s)	194, 367, 1236, 1836, 2097
BciVI	GTATCC	1 cut(s)	742
BclI	TGATCA	1 cut(s)	1114
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	5 cut(s)	297, 792, 1101, 2409, 2769
BcuI	ACTAGT	2 cut(s)	1478, 1502
BfaI	CTAG	6 cut(s)	1140, 1479, 1503, 1920, 2076, 2652
BfmI	CTRYAG	3 cut(s)	1019, 1272, 2184
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	2 cut(s)	662, 1006
BfuAI	ACCTGC	5 cut(s)	373, 1083, 1206, 2744, 2820
BfuI	GTATCC	1 cut(s)	742
BglII	AGATCT	1 cut(s)	1945
Bme1390I	CCNGG	6 cut(s)	194, 225, 367, 1236, 1836, 2097
Bme18I	GGWCC	2 cut(s)	61, 238
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	61, 238, 1468, 2175
BmiI	GGNNCC	6 cut(s)	145, 191, 1074, 1652, 1805, 2478
BmrFI	CCNGG	6 cut(s)	194, 225, 367, 1236, 1836, 2097
BmrI	ACTGGG	1 cut(s)	1616
BmsI	GCATC	9 cut(s)	904, 1315, 1577, 1681, 1967, 2681, 2698, 2718, 2755
BmuI	ACTGGG	1 cut(s)	1616
BpiI	GAAGAC	2 cut(s)	443, 1652
BplI	GAGNNNNNCTC	2 cut(s)	1295, 1327
BpmI	CTGGAG	6 cut(s)	272, 1088, 1299, 1857, 2118, 2156
Bpu10I	CCTNAGC	2 cut(s)	2179, 2381
BpuEI	CTTGAG	4 cut(s)	233, 346, 418, 2762
BpuMI	CCSGG	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	1728
BsaAI	YACGTR	1 cut(s)	2678
BsaBI	GATNNNNATC	2 cut(s)	1932, 2083
BsaHI	GRCGYC	2 cut(s)	138, 144
BsaI	GGTCTC	1 cut(s)	1101
BsaJI	CCNNGG	6 cut(s)	57, 313, 1471, 2193, 2713, 2768
BsaWI	WCCGGW	4 cut(s)	66, 413, 493, 1722
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 832, 2829
Bse118I	RCCGGY	3 cut(s)	77, 140, 493
Bse1I	ACTGG	7 cut(s)	289, 1002, 1035, 1071, 1622, 1826, 2139
Bse21I	CCTNAGG	2 cut(s)	1302, 1646
Bse3DI	GCAATG	2 cut(s)	900, 2670
Bse8I	GATNNNNATC	2 cut(s)	1932, 2083
BseBI	CCWGG	5 cut(s)	194, 367, 1236, 1836, 2097
BseCI	ATCGAT	1 cut(s)	1728
BseDI	CCNNGG	6 cut(s)	57, 313, 1471, 2193, 2713, 2768
BseGI	GGATG	6 cut(s)	87, 696, 895, 1162, 1777, 1778
BseJI	GATNNNNATC	2 cut(s)	1932, 2083
BseLI	CCNNNNNNNGG	3 cut(s)	319, 832, 2829
BseMI	GCAATG	2 cut(s)	900, 2670
BseMII	CTCAG	5 cut(s)	1112, 1182, 1194, 1293, 1637
BseNI	ACTGG	7 cut(s)	289, 1002, 1035, 1071, 1622, 1826, 2139
BseRI	GAGGAG	4 cut(s)	6, 1085, 1208, 2174
BseX3I	CGGCCG	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	888
Bsh1236I	CGCG	2 cut(s)	315, 445
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	9 cut(s)	8, 81, 104, 323, 825, 1469, 2177, 2386, 2791
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	493
BshVI	ATCGAT	1 cut(s)	1728
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	332, 698
BsiSI	CCGG	8 cut(s)	67, 78, 141, 224, 273, 414, 494, 1723
BslI	CCNNNNNNNGG	3 cut(s)	319, 832, 2829
BsmAI	GTCTC	5 cut(s)	297, 792, 1101, 2409, 2769
BsmI	GAATGC	2 cut(s)	565, 610
BsnI	GGCC	9 cut(s)	8, 81, 104, 323, 825, 1469, 2177, 2386, 2791
Bso31I	GGTCTC	1 cut(s)	1101
Bsp1286I	GDGCHC	2 cut(s)	332, 698
Bsp1407I	TGTACA	1 cut(s)	1561
Bsp19I	CCATGG	1 cut(s)	1471
BspANI	GGCC	9 cut(s)	8, 81, 104, 323, 825, 1469, 2177, 2386, 2791
BspCNI	CTCAG	5 cut(s)	1111, 1183, 1195, 1294, 1638
BspDI	ATCGAT	1 cut(s)	1728
BspFNI	CGCG	2 cut(s)	315, 445
BspHI	TCATGA	2 cut(s)	1366, 1717
BspLI	GGNNCC	6 cut(s)	145, 191, 1074, 1652, 1805, 2478
BspMAI	CTGCAG	2 cut(s)	1023, 2188
BspMI	ACCTGC	5 cut(s)	373, 1083, 1206, 2744, 2820
BspPI	GGATC	7 cut(s)	77, 1314, 1733, 1798, 1811, 2471, 2484
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	2 cut(s)	662, 1006
BspTNI	GGTCTC	1 cut(s)	1101
BsrBI	CCGCTC	1 cut(s)	2164
BsrDI	GCAATG	2 cut(s)	900, 2670
BsrFI	RCCGGY	3 cut(s)	77, 140, 493
BsrGI	TGTACA	1 cut(s)	1561
BsrI	ACTGG	7 cut(s)	289, 1002, 1035, 1071, 1622, 1826, 2139
BssAI	RCCGGY	3 cut(s)	77, 140, 493
BssECI	CCNNGG	6 cut(s)	57, 313, 1471, 2193, 2713, 2768
BssNI	GRCGYC	2 cut(s)	138, 144
BssT1I	CCWWGG	4 cut(s)	1471, 2193, 2713, 2768
Bst2UI	CCWGG	5 cut(s)	194, 367, 1236, 1836, 2097
Bst4CI	ACNGT	8 cut(s)	33, 358, 463, 469, 922, 1591, 1885, 2632
Bst6I	CTCTTC	1 cut(s)	2466
BstACI	GRCGYC	2 cut(s)	138, 144
BstAFI	CTTAAG	2 cut(s)	662, 1006
BstAPI	GCANNNNNTGC	1 cut(s)	2678
BstAUI	TGTACA	1 cut(s)	1561
BstBAI	YACGTR	1 cut(s)	2678
BstDEI	CTNAG	9 cut(s)	372, 1098, 1191, 1203, 1302, 1646, 1790, 2179, 2381
BstDSI	CCRYGG	3 cut(s)	57, 313, 1471
BstF5I	GGATG	6 cut(s)	87, 696, 895, 1162, 1777, 1778
BstFNI	CGCG	2 cut(s)	315, 445
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	77, 146, 445
BstMAI	GTCTC	5 cut(s)	297, 792, 1101, 2409, 2769
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	8 cut(s)	315, 575, 643, 1085, 2183, 2669, 2678, 2797
BstNI	CCWGG	5 cut(s)	194, 367, 1236, 1836, 2097
BstNSI	RCATGY	4 cut(s)	2095, 2315, 2486, 2685
BstSCI	CCNGG	6 cut(s)	192, 223, 365, 1234, 1834, 2095
BstSFI	CTRYAG	3 cut(s)	1019, 1272, 2184
BstUI	CGCG	2 cut(s)	315, 445
BstV2I	GAAGAC	2 cut(s)	443, 1652
BstX2I	RGATCY	4 cut(s)	69, 1803, 1945, 2476
BstXI	CCANNNNNNTGG	1 cut(s)	2200
BstYI	RGATCY	4 cut(s)	69, 1803, 1945, 2476
BstZI	CGGCCG	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	1728
Bsu36I	CCTNAGG	2 cut(s)	1302, 1646
BsuI	GTATCC	1 cut(s)	742
BsuRI	GGCC	9 cut(s)	8, 81, 104, 323, 825, 1469, 2177, 2386, 2791
BsuTUI	ATCGAT	1 cut(s)	1728
BtgI	CCRYGG	3 cut(s)	57, 313, 1471
BtsCI	GGATG	6 cut(s)	87, 696, 895, 1162, 1777, 1778
BtsIMutI	CAGTG	5 cut(s)	918, 1670, 1890, 2132, 2628
BveI	ACCTGC	5 cut(s)	373, 1083, 1206, 2744, 2820
CciI	TCATGA	2 cut(s)	1366, 1717
CfoI	GCGC	3 cut(s)	77, 146, 445
Cfr10I	RCCGGY	3 cut(s)	77, 140, 493
Cfr13I	GGNCC	4 cut(s)	61, 238, 1468, 2175
Cfr42I	CCGCGG	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	1728
CseI	GACGC	2 cut(s)	146, 2330
Csp6I	GTAC	5 cut(s)	376, 1283, 1451, 1562, 2329
CspAI	ACCGGT	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	5 cut(s)	376, 1283, 1451, 1562, 2329
DdeI	CTNAG	9 cut(s)	372, 1098, 1191, 1203, 1302, 1646, 1790, 2179, 2381
DinI	GGCGCC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	2506
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	3 cut(s)	79, 102, 823
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	2466
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	2466
EciI	GGCGGA	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	4 cut(s)	1471, 2193, 2713, 2768
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	1101
Eco47I	GGWCC	2 cut(s)	61, 238
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	9 cut(s)	1185, 1646, 1761, 1779, 1962, 2430, 2509, 2780, 2856
Eco72I	CACGTG	1 cut(s)	2678
Eco81I	CCTNAGG	2 cut(s)	1302, 1646
EcoICRI	GAGCTC	1 cut(s)	330
EcoO109I	RGGNCCY	2 cut(s)	238, 2175
EcoRI	GAATTC	1 cut(s)	1223
EcoRII	CCWGG	5 cut(s)	192, 365, 1234, 1834, 2095
EcoT14I	CCWWGG	4 cut(s)	1471, 2193, 2713, 2768
EcoT38I	GRGCYC	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	4 cut(s)	1471, 2193, 2713, 2768
FalI	AAGNNNNNCTT	8 cut(s)	744, 776, 1158, 1190, 1557, 1589, 2318, 2350
FauNDI	CATATG	1 cut(s)	1251
FbaI	TGATCA	1 cut(s)	1114
FblI	GTMKAC	1 cut(s)	1199
FokI	GGATG	6 cut(s)	74, 703, 882, 1169, 1765, 1784
FriOI	GRGCYC	1 cut(s)	332
FspBI	CTAG	6 cut(s)	1140, 1479, 1503, 1920, 2076, 2652
GlaI	GCGC	3 cut(s)	76, 145, 444
GsaI	CCCAGC	1 cut(s)	892
GsuI	CTGGAG	6 cut(s)	272, 1088, 1299, 1857, 2118, 2156
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	9 cut(s)	8, 81, 104, 323, 825, 1469, 2177, 2386, 2791
HapII	CCGG	8 cut(s)	67, 78, 141, 224, 273, 414, 494, 1723
HgaI	GACGC	2 cut(s)	146, 2330
HhaI	GCGC	3 cut(s)	77, 146, 445
Hin1I	GRCGYC	2 cut(s)	138, 144
Hin6I	GCGC	3 cut(s)	75, 144, 443
HinP1I	GCGC	3 cut(s)	75, 144, 443
HindIII	AAGCTT	2 cut(s)	542, 854
HpaII	CCGG	8 cut(s)	67, 78, 141, 224, 273, 414, 494, 1723
HphI	GGTGA	9 cut(s)	21, 508, 1101, 1334, 1865, 1908, 1953, 2254, 2489
Hpy166II	GTNNAC	6 cut(s)	64, 659, 1109, 1130, 1200, 1453
Hpy8I	GTNNAC	6 cut(s)	64, 659, 1109, 1130, 1200, 1453
Hpy99I	CGWCG	2 cut(s)	140, 304
HpyCH4III	ACNGT	8 cut(s)	33, 358, 463, 469, 922, 1591, 1885, 2632
HpyCH4IV	ACGT	2 cut(s)	302, 2677
HpyF10VI	GCNNNNNNNGC	8 cut(s)	315, 575, 643, 1085, 2183, 2669, 2678, 2797
HpyF3I	CTNAG	9 cut(s)	372, 1098, 1191, 1203, 1302, 1646, 1790, 2179, 2381
HpySE526I	ACGT	2 cut(s)	302, 2677
Hsp92I	GRCGYC	2 cut(s)	138, 144
HspAI	GCGC	3 cut(s)	75, 144, 443
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	2 cut(s)	77, 140
KroNI	GCCGGC	2 cut(s)	79, 142
Ksp22I	TGATCA	1 cut(s)	1114
KspI	CCGCGG	1 cut(s)	316
LmnI	GCTCC	4 cut(s)	1072, 2137, 2161, 2491
LweI	GCATC	9 cut(s)	904, 1315, 1577, 1681, 1967, 2681, 2698, 2718, 2755
MaeI	CTAG	6 cut(s)	1140, 1479, 1503, 1920, 2076, 2652
MaeII	ACGT	2 cut(s)	302, 2677
MbiI	CCGCTC	1 cut(s)	2164
MfeI	CAATTG	1 cut(s)	1484
MflI	RGATCY	4 cut(s)	69, 1803, 1945, 2476
MhlI	GDGCHC	2 cut(s)	332, 698
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	4 cut(s)	767, 950, 2181, 2376
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	77, 140
MroXI	GAANNNNTTC	6 cut(s)	655, 756, 971, 1170, 1436, 1947
MslI	CAYNNNNRTG	5 cut(s)	414, 461, 1505, 2113, 2680
MspA1I	CMGCKG	4 cut(s)	315, 1955, 2126, 2318
MspCI	CTTAAG	2 cut(s)	662, 1006
MspI	CCGG	8 cut(s)	67, 78, 141, 224, 273, 414, 494, 1723
MspR9I	CCNGG	6 cut(s)	194, 225, 367, 1236, 1836, 2097
MunI	CAATTG	1 cut(s)	1484
Mva1269I	GAATGC	2 cut(s)	565, 610
MvaI	CCWGG	5 cut(s)	194, 367, 1236, 1836, 2097
MvnI	CGCG	2 cut(s)	315, 445
MwoI	GCNNNNNNNGC	8 cut(s)	315, 575, 643, 1085, 2183, 2669, 2678, 2797
NaeI	GCCGGC	2 cut(s)	79, 142
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	1471
NdeI	CATATG	1 cut(s)	1251
NgoMIV	GCCGGC	2 cut(s)	77, 140
NlaIV	GGNNCC	6 cut(s)	145, 191, 1074, 1652, 1805, 2478
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	6 cut(s)	463, 676, 1238, 1245, 2346, 2495
NspI	RCATGY	4 cut(s)	2095, 2315, 2486, 2685
OliI	CACNNNNGTG	3 cut(s)	414, 461, 2113
PaeI	GCATGC	3 cut(s)	2095, 2315, 2685
PagI	TCATGA	2 cut(s)	1366, 1717
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	2 cut(s)	565, 610
PdiI	GCCGGC	2 cut(s)	79, 142
PdmI	GAANNNNTTC	6 cut(s)	655, 756, 971, 1170, 1436, 1947
PfoI	TCCNGGA	1 cut(s)	1834
PinAI	ACCGGT	1 cut(s)	493
PleI	GAGTC	1 cut(s)	1204
PluTI	GGCGCC	1 cut(s)	147
PmaCI	CACGTG	1 cut(s)	2678
PmlI	CACGTG	1 cut(s)	2678
PpsI	GAGTC	1 cut(s)	1204
Ppu21I	YACGTR	1 cut(s)	2678
PpuMI	RGGWCCY	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	2619
Psp124BI	GAGCTC	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	5 cut(s)	192, 365, 1234, 1834, 2095
PspCI	CACGTG	1 cut(s)	2678
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	5 cut(s)	192, 365, 1234, 1834, 2095
PspN4I	GGNNCC	6 cut(s)	145, 191, 1074, 1652, 1805, 2478
PspPI	GGNCC	4 cut(s)	61, 238, 1468, 2175
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	2 cut(s)	1023, 2188
PsuI	RGATCY	4 cut(s)	69, 1803, 1945, 2476
PvuII	CAGCTG	3 cut(s)	1955, 2126, 2318
RsaI	GTAC	5 cut(s)	377, 1284, 1452, 1563, 2330
RsaNI	GTAC	5 cut(s)	376, 1283, 1451, 1562, 2329
RseI	CAYNNNNRTG	5 cut(s)	414, 461, 1505, 2113, 2680
SacI	GAGCTC	1 cut(s)	332
SacII	CCGCGG	1 cut(s)	316
Sau96I	GGNCC	4 cut(s)	61, 238, 1468, 2175
SchI	GAGTC	1 cut(s)	1205
ScrFI	CCNGG	6 cut(s)	194, 225, 367, 1236, 1836, 2097
SduI	GDGCHC	2 cut(s)	332, 698
SfaNI	GCATC	9 cut(s)	904, 1315, 1577, 1681, 1967, 2681, 2698, 2718, 2755
SfcI	CTRYAG	3 cut(s)	1019, 1272, 2184
SfoI	GGCGCC	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	316
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	316
SinI	GGWCC	2 cut(s)	61, 238
SmiMI	CAYNNNNRTG	5 cut(s)	414, 461, 1505, 2113, 2680
SmlI	CTYRAG	6 cut(s)	248, 325, 397, 662, 1006, 2741
SmoI	CTYRAG	6 cut(s)	248, 325, 397, 662, 1006, 2741
SpeI	ACTAGT	2 cut(s)	1478, 1502
SphI	GCATGC	3 cut(s)	2095, 2315, 2685
SseBI	AGGCCT	1 cut(s)	323
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	2 cut(s)	673, 2070
SspMI	CTAG	6 cut(s)	1140, 1479, 1503, 1920, 2076, 2652
SstI	GAGCTC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	6 cut(s)	192, 223, 365, 1234, 1834, 2095
StyI	CCWWGG	4 cut(s)	1471, 2193, 2713, 2768
TaaI	ACNGT	8 cut(s)	33, 358, 463, 469, 922, 1591, 1885, 2632
TaiI	ACGT	2 cut(s)	305, 2680
TaqI	TCGA	9 cut(s)	93, 123, 135, 156, 201, 1519, 1728, 2659, 2811
TatI	WGTACW	3 cut(s)	1450, 1561, 2328
TauI	GCSGC	4 cut(s)	107, 216, 318, 448
TscAI	CASTG	5 cut(s)	925, 1670, 1890, 2139, 2635
TseFI	GTSAC	6 cut(s)	463, 676, 1238, 1245, 2346, 2495
Tsp45I	GTSAC	6 cut(s)	463, 676, 1238, 1245, 2346, 2495
TspDTI	ATGAA	6 cut(s)	1386, 1431, 1530, 2252, 2257, 2862
TspGWI	ACGGA	2 cut(s)	9, 46
TspRI	CASTG	5 cut(s)	925, 1670, 1890, 2139, 2635
Vha464I	CTTAAG	2 cut(s)	662, 1006
VpaK11BI	GGWCC	2 cut(s)	61, 238
XapI	RAATTY	5 cut(s)	487, 913, 1223, 1393, 1420
XbaI	TCTAGA	2 cut(s)	2075, 2651
XceI	RCATGY	4 cut(s)	2095, 2315, 2486, 2685
XmiI	GTMKAC	1 cut(s)	1199
XmnI	GAANNNNTTC	6 cut(s)	655, 756, 971, 1170, 1436, 1947
XspI	CTAG	6 cut(s)	1140, 1479, 1503, 1920, 2076, 2652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.